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The map label for this gene is capD [H]

Identifier: 197118008

GI number: 197118008

Start: 1881157

End: 1882173

Strand: Direct

Name: capD [H]

Synonym: Gbem_1621

Alternate gene names: 197118008

Gene position: 1881157-1882173 (Clockwise)

Preceding gene: 197118007

Following gene: 197118009

Centisome position: 40.76

GC content: 55.95

Gene sequence:

>1017_bases
ATGTTTTCTGGCAAGACCCTGCTCATCACCGGCGGCACCGGATCCTTTGGGAACGCAGTGCTACGACGCTTTCTGCACAC
CGACATCAAAGAGATCCGCGTTTTCAGCCGCGACGAGAAAAAGCAGGAGGACATGCGCATCGGGCTGAACAACGGCAAGG
TGAAGTTCTATATCGGCGACGTGCGTGCCTTTGATGGTATTAACGCTGCTTTGCATGGAGTCGACTTCGTGTTTCATGCC
GCGGCTCTTAAGCAGGTTCCTTCCTGCGAGTTTTACCCGATGGAGGCGGTACGGACCAACGTGCTGGGGACCGAAAACGT
CCTCAATGCCGCGCTGCAAAGCGGGGTGAAGAAGGTCATCACCCTCAGCACCGATAAGGCGGTCTACCCCATCAACGCCA
TGGGTATCTCCAAAGCGATGATGGAGAAACTCATGGTCGCCAAGGCGCGCATGACCGACGTGAGCAGGACGATATTTTCC
GGCACGCGCTACGGCAACGTGATGGCTTCCCGTGGCTCCGTCATCCCGCTTTTCGTGAAGCAGATAAAAGAGGGCAAGCC
ACTCACCGTTACCGATCCCAATATGACCCGGTTCCTGATGTCCCTTGACGATGCTGTCGACCTTGTCCTCTACGGTTTCA
GCAATGCCAGGCAAGGGGACATATTCGTGCAAAAGGCACCCGCCTCCACCATACTGGACCTGGCAGTGGCGGTGAAGGAG
TTGTTCGACGCGAACAACGAAATCCGCATCATCGGCACGAGGCACGGAGAGAAGTTGTACGAGACCCTGCTCACGCGCGA
GGAACTTGCCAAGGCCGAAGACATGGGTGACTACTTCAGGATTCTTCCTGATGACAGGGACCTGAACTACGGCAAGTACT
TCACCGAAGGCGAGGAGAAGGTGTCAACCATCGACGACTACAACTCCCACAACACCCAGAGGTTGTCCGTGGCAGAGATC
AAGGAAAAGCTCTTGAAGCTCGACTACATTCGCGGCGAACTGGAGGGGAGGGCATGA

Upstream 100 bases:

>100_bases
CATTTTCCTGGGAGCGTTGCGCCCGGGAGACTTTTTCGTTTATCGCGCAGGTAGCCTGTGGTAACGGGCGGTAGGCAAAT
TTTCTGCAAAGGGGGAGTAC

Downstream 100 bases:

>100_bases
GGAAGGTCCTCATCACCGGATCGAATGGCTTCATCGGCAAGAACCTCGCGGCTTCCCTGGCACACCTGGAGGGAGTCGAG
GTTCACGGGGTTGATGTGGA

Product: NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MFSGKTLLITGGTGSFGNAVLRRFLHTDIKEIRVFSRDEKKQEDMRIGLNNGKVKFYIGDVRAFDGINAALHGVDFVFHA
AALKQVPSCEFYPMEAVRTNVLGTENVLNAALQSGVKKVITLSTDKAVYPINAMGISKAMMEKLMVAKARMTDVSRTIFS
GTRYGNVMASRGSVIPLFVKQIKEGKPLTVTDPNMTRFLMSLDDAVDLVLYGFSNARQGDIFVQKAPASTILDLAVAVKE
LFDANNEIRIIGTRHGEKLYETLLTREELAKAEDMGDYFRILPDDRDLNYGKYFTEGEEKVSTIDDYNSHNTQRLSVAEI
KEKLLKLDYIRGELEGRA

Sequences:

>Translated_338_residues
MFSGKTLLITGGTGSFGNAVLRRFLHTDIKEIRVFSRDEKKQEDMRIGLNNGKVKFYIGDVRAFDGINAALHGVDFVFHA
AALKQVPSCEFYPMEAVRTNVLGTENVLNAALQSGVKKVITLSTDKAVYPINAMGISKAMMEKLMVAKARMTDVSRTIFS
GTRYGNVMASRGSVIPLFVKQIKEGKPLTVTDPNMTRFLMSLDDAVDLVLYGFSNARQGDIFVQKAPASTILDLAVAVKE
LFDANNEIRIIGTRHGEKLYETLLTREELAKAEDMGDYFRILPDDRDLNYGKYFTEGEEKVSTIDDYNSHNTQRLSVAEI
KEKLLKLDYIRGELEGRA
>Mature_338_residues
MFSGKTLLITGGTGSFGNAVLRRFLHTDIKEIRVFSRDEKKQEDMRIGLNNGKVKFYIGDVRAFDGINAALHGVDFVFHA
AALKQVPSCEFYPMEAVRTNVLGTENVLNAALQSGVKKVITLSTDKAVYPINAMGISKAMMEKLMVAKARMTDVSRTIFS
GTRYGNVMASRGSVIPLFVKQIKEGKPLTVTDPNMTRFLMSLDDAVDLVLYGFSNARQGDIFVQKAPASTILDLAVAVKE
LFDANNEIRIIGTRHGEKLYETLLTREELAKAEDMGDYFRILPDDRDLNYGKYFTEGEEKVSTIDDYNSHNTQRLSVAEI
KEKLLKLDYIRGELEGRA

Specific function: Epimerizes UDP-galactose to UDP-glucose [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869
- InterPro:   IPR013692 [H]

Pfam domain/function: PF08485 Polysacc_syn_2C; PF02719 Polysacc_synt_2 [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 37731; Mature: 37731

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSGKTLLITGGTGSFGNAVLRRFLHTDIKEIRVFSRDEKKQEDMRIGLNNGKVKFYIGD
CCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHEECCCCCEEEEEEEC
VRAFDGINAALHGVDFVFHAAALKQVPSCEFYPMEAVRTNVLGTENVLNAALQSGVKKVI
EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCHHEEE
TLSTDKAVYPINAMGISKAMMEKLMVAKARMTDVSRTIFSGTRYGNVMASRGSVIPLFVK
EECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHH
QIKEGKPLTVTDPNMTRFLMSLDDAVDLVLYGFSNARQGDIFVQKAPASTILDLAVAVKE
HHCCCCCEEEECCHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHH
LFDANNEIRIIGTRHGEKLYETLLTREELAKAEDMGDYFRILPDDRDLNYGKYFTEGEEK
HHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHH
VSTIDDYNSHNTQRLSVAEIKEKLLKLDYIRGELEGRA
HHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFSGKTLLITGGTGSFGNAVLRRFLHTDIKEIRVFSRDEKKQEDMRIGLNNGKVKFYIGD
CCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHEECCCCCEEEEEEEC
VRAFDGINAALHGVDFVFHAAALKQVPSCEFYPMEAVRTNVLGTENVLNAALQSGVKKVI
EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCHHEEE
TLSTDKAVYPINAMGISKAMMEKLMVAKARMTDVSRTIFSGTRYGNVMASRGSVIPLFVK
EECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHH
QIKEGKPLTVTDPNMTRFLMSLDDAVDLVLYGFSNARQGDIFVQKAPASTILDLAVAVKE
HHCCCCCEEEECCHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHH
LFDANNEIRIIGTRHGEKLYETLLTREELAKAEDMGDYFRILPDDRDLNYGKYFTEGEEK
HHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHH
VSTIDDYNSHNTQRLSVAEIKEKLLKLDYIRGELEGRA
HHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA