| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is fur-1 [H]
Identifier: 197117974
GI number: 197117974
Start: 1840756
End: 1841187
Strand: Direct
Name: fur-1 [H]
Synonym: Gbem_1587
Alternate gene names: 197117974
Gene position: 1840756-1841187 (Clockwise)
Preceding gene: 197117973
Following gene: 197117975
Centisome position: 39.89
GC content: 60.42
Gene sequence:
>432_bases ATGAAACGAGCCAAGAAAAAAATCTTCGCGGACTTCATCGCTCAGCGCGGACTCAAGACGACCAAGCAGCGGGACATCAT CCTCGACAGCTTCCTGTCCAGCGACAGGCACCTGAGCATCGAGGACTTGTATCTGAAGCTCAGAGCCAAGCACCCGAACA TCGGCTACGCCACGGTGTACCGGACTCTGAAGCTCTTCGCCGAGGCAGGTCTCGCCCGCGAGATGCAGTTCGGCGACGGC CAGACCCGCTACGAGCACGTGGGGGAGGGCGAGCACCACGATCACTTGGTCTGCACCCGGTGCGGCCACATCGAGGAGTT CGAGAACGAGACCATCGAGAAACTGCAGGACGAGGTGGCCAACAGCCGGGGCTTCCTGATCGAGCGCCACCGCCTCGAAC TCTACGGCCTTTGCTCCGGCTGTAGAAAGTAA
Upstream 100 bases:
>100_bases TCTGTCCATTCTGTCCATTCTGTCCGCAGTGCTTCAAAATAATCATTGACAGTGACGGGCGCCGCCGTTACTATGACATC CACTTTCAATTGGGGTTCAC
Downstream 100 bases:
>100_bases AGGGCTGGCGGGTTCCTCATTGGTTTAGGCTGCCCACCGGTTCTCTGCGGTCCCGCACCAAAAGCTATAAAAAATTTTTC CCGCCATCATGAAAGTGATA
Product: ferric uptake regulation protein Fur
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 143; Mature: 143
Protein sequence:
>143_residues MKRAKKKIFADFIAQRGLKTTKQRDIILDSFLSSDRHLSIEDLYLKLRAKHPNIGYATVYRTLKLFAEAGLAREMQFGDG QTRYEHVGEGEHHDHLVCTRCGHIEEFENETIEKLQDEVANSRGFLIERHRLELYGLCSGCRK
Sequences:
>Translated_143_residues MKRAKKKIFADFIAQRGLKTTKQRDIILDSFLSSDRHLSIEDLYLKLRAKHPNIGYATVYRTLKLFAEAGLAREMQFGDG QTRYEHVGEGEHHDHLVCTRCGHIEEFENETIEKLQDEVANSRGFLIERHRLELYGLCSGCRK >Mature_143_residues MKRAKKKIFADFIAQRGLKTTKQRDIILDSFLSSDRHLSIEDLYLKLRAKHPNIGYATVYRTLKLFAEAGLAREMQFGDG QTRYEHVGEGEHHDHLVCTRCGHIEEFENETIEKLQDEVANSRGFLIERHRLELYGLCSGCRK
Specific function: Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
Organism=Escherichia coli, GI1786899, Length=134, Percent_Identity=39.5522388059701, Blast_Score=89, Evalue=1e-19, Organism=Escherichia coli, GI87082363, Length=131, Percent_Identity=28.2442748091603, Blast_Score=60, Evalue=8e-11,
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 - InterPro: IPR011991 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 16608; Mature: 16608
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRAKKKIFADFIAQRGLKTTKQRDIILDSFLSSDRHLSIEDLYLKLRAKHPNIGYATVY CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHH RTLKLFAEAGLAREMQFGDGQTRYEHVGEGEHHDHLVCTRCGHIEEFENETIEKLQDEVA HHHHHHHHHCHHHHHCCCCCCCHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHH NSRGFLIERHRLELYGLCSGCRK CCCCCEEEHHHHHHHHHHHHCCC >Mature Secondary Structure MKRAKKKIFADFIAQRGLKTTKQRDIILDSFLSSDRHLSIEDLYLKLRAKHPNIGYATVY CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHH RTLKLFAEAGLAREMQFGDGQTRYEHVGEGEHHDHLVCTRCGHIEEFENETIEKLQDEVA HHHHHHHHHCHHHHHCCCCCCCHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHH NSRGFLIERHRLELYGLCSGCRK CCCCCEEEHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12910271 [H]