| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117864
Identifier: 197117864
GI number: 197117864
Start: 1708720
End: 1710699
Strand: Direct
Name: 197117864
Synonym: Gbem_1477
Alternate gene names: NA
Gene position: 1708720-1710699 (Clockwise)
Preceding gene: 197117860
Following gene: 197117867
Centisome position: 37.02
GC content: 48.99
Gene sequence:
>1980_bases ATGGAGGATGAAATGAGAAAGAAAATATCGATGTTGTGTGTCATCTTGGTTGCTTTTGTAGCTAACGCTGCTTATTCGGC GGAAGGTGACCGTTGCAGCCCACAGATCGCGAACAACGCCGCGGCAGCCAGTGTGTGTGGCCCCGTTTGCGAGAAATACG GATTGGTCTTTGCTGGGAACTGGAGCAATGATCCCCATCACCCACCTGTCAAAGCGTGCATCGACAAGGGCGAAGGTGAA GCCGTCTGCGGATGTGCGGCCACCAATGATGTGGAGATTTCCCCCACCGTTCAAACCGTCGATACGGCCACACAACTACA AATACCAATCGGGATGAAGAAGACCTGCTTACAAGGACCCGACAGCTTATACGCTAGTCAAACCTGTCCCGTCGTTAATG CCAACGGTTTAGATTTTTGGGCATTAAGCTATGTCGATAATAGGGTAGGGATGGCCATAGTTGCGTATGACTCCGCCGGT AAGGTGGTTGGCCTTATTGAAAAAACCGGTGCTCGTTATATTTGGGATATTGCAGTAGATGCCACGAAGGAAACTATCTC TTTCCGAGGGCAAGCCAACAAGGTCGTTTCGTTGAAGTGGAGCGATTTATTCATTCCTCAAATGGCTAAGGGAAATACTA CAGCGAACTATGTTATCTGGCCTACGAGTACCAGTGGGCAGGCCTCATGGACAAACGGGGTACAAAATTATGGAACCGCC GCTCCATTCGGTAGCGGCGCAAATCAACTCCTTGACCCTTACATTGAGCATAGTGCCGGCAAACAGCTTTGCGCCGATAA AAAGCAACCCTGGTCTGTATATACCTACGCCACTATTGGCTCTCCGTACTCAACGGTCACTTGTATTCTGCCTCCAGTTC CGGGCCAACCCACGTATAACCCCGCTATGAATGCACTTTTGGACGCTGCTGTAAATGATCACAGCTTAATGGCCGCTTTG GCCTCCGCCGTATCCGATGCTCAGCTGATTGCAGCAGCGGCCAGCAAGGGTTATAAAATCACCGAGGCAGATATTGCGCA AAGCAGAGGCCCAGTAGCATCGTCATCGTCTACAGTTAAGCGATCACTTTCGGCCGGCTCTGCTAGCTGTGGCGGTAGTG GGCAGGAGCCATGTTCTCAATGCACCCAAGAAACTTGCGTTTACTGGCCCTTCAATTTCTGCTGCATTAAAGAATATTGC GAGTGCGTGCAGTCGAGCTATTCCTGCAATGCCGGACTATCGATTAATCCAAGCGGCATCTGCACAGCTCCCAGAACTTG TCTCCCTAACCAGATATGCAAGGATTTTGTTGTTTTTTTGGAATACAACGATAACGGAACTAAAGATAATCGCGTATGCG AACAATGGCTTTCATACCCAAACTGTGCAAAAGGCATCCCCAACGCCGCTTTGTCAGCATATGAAATTGTATTTAACAAA GGAAAAGCTTATTACAAGTCAACCAATACATTGGTGAATACTTGGACAGGTAGCCCCAGTAGGGAAACATTATATGTCAT TGATGCCAGAGACAATAAAATTTACTTAGTAAACGTCGACGGGCGTTACATTCAGGTACGGGGATCAGCTAATTGCATCG GTCAAACTATTCCCGAAGGCGATTCTACAGCTGCCTGCGCCAAGCCAAGGCTAACCACGCACGCTGGTATATTGATGGGG TCTATTGCCGGGTTGCCGTCTCCAAACTCAGAGCCTGGGTCAACGGTTCAACAGACAATCAAGGTCATCGGCGCTGGTAC TATTCAAGTGATCAATGGCGATATTCAATGGATTACAAACGACAGCGGGCACTTCAAGCCATCGCAGGATAATTTGAAAA ACAGTATAGCCGCGTTTAAGGCCGCGGGGTTTCCAAACTTTCCGCCGTTGGGTGATTGTACTTACAGCTTTCAACCCGTT GCAGGCAAGGACGGGGTTTATCGCCAGAACGCGGTTGATGTCAGTCATTGCGAGTTGTAA
Upstream 100 bases:
>100_bases TCCAATGGGTCGGTGCGCCATGTCACAGCAGGAGCTGGACGATCTTTCCCCAGTAGCCTGCCTTCTGTCTTGTAGCAGGG TTCGAGGGAGGAATACACCT
Downstream 100 bases:
>100_bases ATTCTCCTGAGCAGTCCCCCTGCGTGGCCGGAGTGGGGGGCCACCACTTTCACTCTTGAATATGAAGAAGAGGACTTAGC CGTTCGGCTAAGTCCTCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 659; Mature: 659
Protein sequence:
>659_residues MEDEMRKKISMLCVILVAFVANAAYSAEGDRCSPQIANNAAAASVCGPVCEKYGLVFAGNWSNDPHHPPVKACIDKGEGE AVCGCAATNDVEISPTVQTVDTATQLQIPIGMKKTCLQGPDSLYASQTCPVVNANGLDFWALSYVDNRVGMAIVAYDSAG KVVGLIEKTGARYIWDIAVDATKETISFRGQANKVVSLKWSDLFIPQMAKGNTTANYVIWPTSTSGQASWTNGVQNYGTA APFGSGANQLLDPYIEHSAGKQLCADKKQPWSVYTYATIGSPYSTVTCILPPVPGQPTYNPAMNALLDAAVNDHSLMAAL ASAVSDAQLIAAAASKGYKITEADIAQSRGPVASSSSTVKRSLSAGSASCGGSGQEPCSQCTQETCVYWPFNFCCIKEYC ECVQSSYSCNAGLSINPSGICTAPRTCLPNQICKDFVVFLEYNDNGTKDNRVCEQWLSYPNCAKGIPNAALSAYEIVFNK GKAYYKSTNTLVNTWTGSPSRETLYVIDARDNKIYLVNVDGRYIQVRGSANCIGQTIPEGDSTAACAKPRLTTHAGILMG SIAGLPSPNSEPGSTVQQTIKVIGAGTIQVINGDIQWITNDSGHFKPSQDNLKNSIAAFKAAGFPNFPPLGDCTYSFQPV AGKDGVYRQNAVDVSHCEL
Sequences:
>Translated_659_residues MEDEMRKKISMLCVILVAFVANAAYSAEGDRCSPQIANNAAAASVCGPVCEKYGLVFAGNWSNDPHHPPVKACIDKGEGE AVCGCAATNDVEISPTVQTVDTATQLQIPIGMKKTCLQGPDSLYASQTCPVVNANGLDFWALSYVDNRVGMAIVAYDSAG KVVGLIEKTGARYIWDIAVDATKETISFRGQANKVVSLKWSDLFIPQMAKGNTTANYVIWPTSTSGQASWTNGVQNYGTA APFGSGANQLLDPYIEHSAGKQLCADKKQPWSVYTYATIGSPYSTVTCILPPVPGQPTYNPAMNALLDAAVNDHSLMAAL ASAVSDAQLIAAAASKGYKITEADIAQSRGPVASSSSTVKRSLSAGSASCGGSGQEPCSQCTQETCVYWPFNFCCIKEYC ECVQSSYSCNAGLSINPSGICTAPRTCLPNQICKDFVVFLEYNDNGTKDNRVCEQWLSYPNCAKGIPNAALSAYEIVFNK GKAYYKSTNTLVNTWTGSPSRETLYVIDARDNKIYLVNVDGRYIQVRGSANCIGQTIPEGDSTAACAKPRLTTHAGILMG SIAGLPSPNSEPGSTVQQTIKVIGAGTIQVINGDIQWITNDSGHFKPSQDNLKNSIAAFKAAGFPNFPPLGDCTYSFQPV AGKDGVYRQNAVDVSHCEL >Mature_659_residues MEDEMRKKISMLCVILVAFVANAAYSAEGDRCSPQIANNAAAASVCGPVCEKYGLVFAGNWSNDPHHPPVKACIDKGEGE AVCGCAATNDVEISPTVQTVDTATQLQIPIGMKKTCLQGPDSLYASQTCPVVNANGLDFWALSYVDNRVGMAIVAYDSAG KVVGLIEKTGARYIWDIAVDATKETISFRGQANKVVSLKWSDLFIPQMAKGNTTANYVIWPTSTSGQASWTNGVQNYGTA APFGSGANQLLDPYIEHSAGKQLCADKKQPWSVYTYATIGSPYSTVTCILPPVPGQPTYNPAMNALLDAAVNDHSLMAAL ASAVSDAQLIAAAASKGYKITEADIAQSRGPVASSSSTVKRSLSAGSASCGGSGQEPCSQCTQETCVYWPFNFCCIKEYC ECVQSSYSCNAGLSINPSGICTAPRTCLPNQICKDFVVFLEYNDNGTKDNRVCEQWLSYPNCAKGIPNAALSAYEIVFNK GKAYYKSTNTLVNTWTGSPSRETLYVIDARDNKIYLVNVDGRYIQVRGSANCIGQTIPEGDSTAACAKPRLTTHAGILMG SIAGLPSPNSEPGSTVQQTIKVIGAGTIQVINGDIQWITNDSGHFKPSQDNLKNSIAAFKAAGFPNFPPLGDCTYSFQPV AGKDGVYRQNAVDVSHCEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70060; Mature: 70060
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 4.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDEMRKKISMLCVILVAFVANAAYSAEGDRCSPQIANNAAAASVCGPVCEKYGLVFAGN CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCEEEEEC WSNDPHHPPVKACIDKGEGEAVCGCAATNDVEISPTVQTVDTATQLQIPIGMKKTCLQGP CCCCCCCCCHHHHHCCCCCCEEEEEECCCCEEECCCCEEECCCEEEEECCCCHHHHHCCC DSLYASQTCPVVNANGLDFWALSYVDNRVGMAIVAYDSAGKVVGLIEKTGARYIWDIAVD CHHHHCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEC ATKETISFRGQANKVVSLKWSDLFIPQMAKGNTTANYVIWPTSTSGQASWTNGVQNYGTA CCHHHEEECCCCCEEEEEEECCEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCC APFGSGANQLLDPYIEHSAGKQLCADKKQPWSVYTYATIGSPYSTVTCILPPVPGQPTYN CCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCC PAMNALLDAAVNDHSLMAALASAVSDAQLIAAAASKGYKITEADIAQSRGPVASSSSTVK HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHH RSLSAGSASCGGSGQEPCSQCTQETCVYWPFNFCCIKEYCECVQSSYSCNAGLSINPSGI HHHCCCCCCCCCCCCHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCCCCCCEECCCCC CTAPRTCLPNQICKDFVVFLEYNDNGTKDNRVCEQWLSYPNCAKGIPNAALSAYEIVFNK CCCCCCCCCHHHHHCEEEEEEECCCCCCHHHHHHHHHCCCCHHCCCCHHHHHHEEEEEEC GKAYYKSTNTLVNTWTGSPSRETLYVIDARDNKIYLVNVDGRYIQVRGSANCIGQTIPEG CCEEEECCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCC DSTAACAKPRLTTHAGILMGSIAGLPSPNSEPGSTVQQTIKVIGAGTIQVINGDIQWITN CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCEEEEEC DSGHFKPSQDNLKNSIAAFKAAGFPNFPPLGDCTYSFQPVAGKDGVYRQNAVDVSHCEL CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHCCC >Mature Secondary Structure MEDEMRKKISMLCVILVAFVANAAYSAEGDRCSPQIANNAAAASVCGPVCEKYGLVFAGN CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCEEEEEC WSNDPHHPPVKACIDKGEGEAVCGCAATNDVEISPTVQTVDTATQLQIPIGMKKTCLQGP CCCCCCCCCHHHHHCCCCCCEEEEEECCCCEEECCCCEEECCCEEEEECCCCHHHHHCCC DSLYASQTCPVVNANGLDFWALSYVDNRVGMAIVAYDSAGKVVGLIEKTGARYIWDIAVD CHHHHCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEC ATKETISFRGQANKVVSLKWSDLFIPQMAKGNTTANYVIWPTSTSGQASWTNGVQNYGTA CCHHHEEECCCCCEEEEEEECCEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCC APFGSGANQLLDPYIEHSAGKQLCADKKQPWSVYTYATIGSPYSTVTCILPPVPGQPTYN CCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCC PAMNALLDAAVNDHSLMAALASAVSDAQLIAAAASKGYKITEADIAQSRGPVASSSSTVK HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHH RSLSAGSASCGGSGQEPCSQCTQETCVYWPFNFCCIKEYCECVQSSYSCNAGLSINPSGI HHHCCCCCCCCCCCCHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCCCCCCEECCCCC CTAPRTCLPNQICKDFVVFLEYNDNGTKDNRVCEQWLSYPNCAKGIPNAALSAYEIVFNK CCCCCCCCCHHHHHCEEEEEEECCCCCCHHHHHHHHHCCCCHHCCCCHHHHHHEEEEEEC GKAYYKSTNTLVNTWTGSPSRETLYVIDARDNKIYLVNVDGRYIQVRGSANCIGQTIPEG CCEEEECCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCC DSTAACAKPRLTTHAGILMGSIAGLPSPNSEPGSTVQQTIKVIGAGTIQVINGDIQWITN CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCEEEEEC DSGHFKPSQDNLKNSIAAFKAAGFPNFPPLGDCTYSFQPVAGKDGVYRQNAVDVSHCEL CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA