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The map label for this gene is ygiV [H]

Identifier: 197117861

GI number: 197117861

Start: 1706346

End: 1707206

Strand: Reverse

Name: ygiV [H]

Synonym: Gbem_1474

Alternate gene names: 197117861

Gene position: 1707206-1706346 (Counterclockwise)

Preceding gene: 197117862

Following gene: 197117846

Centisome position: 36.99

GC content: 60.28

Gene sequence:

>861_bases
ATGGACAAGGCACAGGCATACGCAGAAAGGTTCGACAGGGTGCTACGCTACATCGAACGGCACCTGGACGAGCCTTTAAC
GGTGGAACGGTTGAGCCGGGTGGCGCATTTCTCCAAGTTCCACTTCCACAGGCAATTCTCGCTCTACACCGGCATCGGCG
TCTTCGGCTACATTCGGCTGCTGCGGCTTAAGCACGCTTCCTACCGGCTTGCCTACCGCCGGGAGGAGCGCATCATCGAC
ATTGCCCTCGATGCCGGGTTCGACAGCCCTGAAGCGTTTGCCCGCGCCTTCAAGCAGATGTTCGGACATTCCCCCTCCCA
ATTCAGAAAATCACCCATATGGCAGCCATGGAGGGAGCGCTTCCGGCTGCCGACCATCGAAAGGAGAGGAAACATGGACG
TGAAAATTGTGGAGTTCGCCGAGACGCGGATTGCGGTCCTGGAGCACCGGGGCGCGCCGGAAAAGGTGGATGACTCGGCA
CTTAAGTTCATCGAATGGCGCAAGCAAAGCGGGCTGTCACCGGTGAAGCAGTCCCGCACCTTCGGCCTCGTCTACGACGA
CCCCGCAACGGTTGAGCCGGAAGAGTTCCGCTTCGACATCTGCGGTGAAGTGTCGCAGGAGGTGCCGGAGAACCCGCAGG
GAGTGTTCAACAGCGTCATCCAAGGTGGCCGGTGCGCGGTGGTGCGGCACTTGGGCTCCCACGATCGGATAGGCGACAGC
ATTTATCCGCTCTACCGCGACTGGTTCCCGAAAAGCGGCGAAGAGCTGCGGGACTTCCCCCTCTTCTTCCACTACCTGAA
CCTCATGCCCGACGTGGCCGAGCACGAGCTCGTCACAGACATCTACCTGCCGCTGAAGTAG

Upstream 100 bases:

>100_bases
GGACAATCGGCGGAATAATTACAGGAAACAGAGCAATTACGGTCAGGATTCTCTCTTGAAGTTGGGGTAGGATGACCATC
GGATAGAGAGGGGCGAGGAC

Downstream 100 bases:

>100_bases
TTACGCCCTTTTAGCAGGCCCCAAGTTGTCCGCGATGATCTGTAACTTACACATCGCGGTATGTAAGTCATGCATCGCAA
CGAGTAACTCATGCACCGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MDKAQAYAERFDRVLRYIERHLDEPLTVERLSRVAHFSKFHFHRQFSLYTGIGVFGYIRLLRLKHASYRLAYRREERIID
IALDAGFDSPEAFARAFKQMFGHSPSQFRKSPIWQPWRERFRLPTIERRGNMDVKIVEFAETRIAVLEHRGAPEKVDDSA
LKFIEWRKQSGLSPVKQSRTFGLVYDDPATVEPEEFRFDICGEVSQEVPENPQGVFNSVIQGGRCAVVRHLGSHDRIGDS
IYPLYRDWFPKSGEELRDFPLFFHYLNLMPDVAEHELVTDIYLPLK

Sequences:

>Translated_286_residues
MDKAQAYAERFDRVLRYIERHLDEPLTVERLSRVAHFSKFHFHRQFSLYTGIGVFGYIRLLRLKHASYRLAYRREERIID
IALDAGFDSPEAFARAFKQMFGHSPSQFRKSPIWQPWRERFRLPTIERRGNMDVKIVEFAETRIAVLEHRGAPEKVDDSA
LKFIEWRKQSGLSPVKQSRTFGLVYDDPATVEPEEFRFDICGEVSQEVPENPQGVFNSVIQGGRCAVVRHLGSHDRIGDS
IYPLYRDWFPKSGEELRDFPLFFHYLNLMPDVAEHELVTDIYLPLK
>Mature_286_residues
MDKAQAYAERFDRVLRYIERHLDEPLTVERLSRVAHFSKFHFHRQFSLYTGIGVFGYIRLLRLKHASYRLAYRREERIID
IALDAGFDSPEAFARAFKQMFGHSPSQFRKSPIWQPWRERFRLPTIERRGNMDVKIVEFAETRIAVLEHRGAPEKVDDSA
LKFIEWRKQSGLSPVKQSRTFGLVYDDPATVEPEEFRFDICGEVSQEVPENPQGVFNSVIQGGRCAVVRHLGSHDRIGDS
IYPLYRDWFPKSGEELRDFPLFFHYLNLMPDVAEHELVTDIYLPLK

Specific function: Represses expression of mcbR [H]

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI48994918, Length=155, Percent_Identity=50.9677419354839, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1790857, Length=102, Percent_Identity=41.1764705882353, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790497, Length=97, Percent_Identity=35.0515463917526, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 33609; Mature: 33609

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKAQAYAERFDRVLRYIERHLDEPLTVERLSRVAHFSKFHFHRQFSLYTGIGVFGYIRL
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLKHASYRLAYRREERIIDIALDAGFDSPEAFARAFKQMFGHSPSQFRKSPIWQPWRER
HHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHH
FRLPTIERRGNMDVKIVEFAETRIAVLEHRGAPEKVDDSALKFIEWRKQSGLSPVKQSRT
CCCCCHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCE
FGLVYDDPATVEPEEFRFDICGEVSQEVPENPQGVFNSVIQGGRCAVVRHLGSHDRIGDS
EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCH
IYPLYRDWFPKSGEELRDFPLFFHYLNLMPDVAEHELVTDIYLPLK
HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDKAQAYAERFDRVLRYIERHLDEPLTVERLSRVAHFSKFHFHRQFSLYTGIGVFGYIRL
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLKHASYRLAYRREERIIDIALDAGFDSPEAFARAFKQMFGHSPSQFRKSPIWQPWRER
HHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHH
FRLPTIERRGNMDVKIVEFAETRIAVLEHRGAPEKVDDSALKFIEWRKQSGLSPVKQSRT
CCCCCHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCE
FGLVYDDPATVEPEEFRFDICGEVSQEVPENPQGVFNSVIQGGRCAVVRHLGSHDRIGDS
EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCH
IYPLYRDWFPKSGEELRDFPLFFHYLNLMPDVAEHELVTDIYLPLK
HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]