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The map label for this gene is rnk [H]

Identifier: 197117702

GI number: 197117702

Start: 1517267

End: 1517698

Strand: Direct

Name: rnk [H]

Synonym: Gbem_1314

Alternate gene names: 197117702

Gene position: 1517267-1517698 (Clockwise)

Preceding gene: 197117701

Following gene: 197117703

Centisome position: 32.88

GC content: 55.56

Gene sequence:

>432_bases
ATGAAGAATACCCAGAAGGCGCAACGGCAGGTAGTCGTAACCGAATTCGACATGGAGCGTTTGGAGGCTTTGATCGACAA
GGCGCGCTCCACCCAGACGCGGGACAGCAAGAACCTGAAAGAACTGGGAGAAGAACTGGTCCGGGCTGAAGTGGTGGATC
CGGCGGGCATCCCTCCGGACGTGATCACCATGAATTCGAAGGTTTGCCTGCAGGATCTCGATTCCGAGGAAGAGTTGGTT
TACACGCTCGTCTTTCCCAACGAGGCGGATCTGGCCAGCGGCAAGATCTCGATTCTGGCACCGGTCGGTACCGCTATGAT
CGGTTTTAGAACCGGAGACCGCATCACCTGGCCCGTACCTGGAGGGATGAAGAATCTGAAGGTGAAGAAGATTCTCTATC
AGCCTGAAGCGGCAGGGGATTACCATCTCTAG

Upstream 100 bases:

>100_bases
GGGGGCACGAGCAATCCTGCCGGTCATGCTTATGCTGAACCGTTGGCACTGATTCCCCGCTGCTTGACGGCGGCGATACT
AACATTGAGGAGGTTTCACT

Downstream 100 bases:

>100_bases
GAAGTTCGCGCGGCTTCTTCGCGGCAGGCAGGAAGGAACAGTTTCTTGCCTGTTCTTGCAGACAGCACGGCATGGCTGGA
TCAGGGGAGTCCGAGGAAAG

Product: RNA polymerase-binding protein Rnk

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MKNTQKAQRQVVVTEFDMERLEALIDKARSTQTRDSKNLKELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSEEELV
YTLVFPNEADLASGKISILAPVGTAMIGFRTGDRITWPVPGGMKNLKVKKILYQPEAAGDYHL

Sequences:

>Translated_143_residues
MKNTQKAQRQVVVTEFDMERLEALIDKARSTQTRDSKNLKELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSEEELV
YTLVFPNEADLASGKISILAPVGTAMIGFRTGDRITWPVPGGMKNLKVKKILYQPEAAGDYHL
>Mature_143_residues
MKNTQKAQRQVVVTEFDMERLEALIDKARSTQTRDSKNLKELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSEEELV
YTLVFPNEADLASGKISILAPVGTAMIGFRTGDRITWPVPGGMKNLKVKKILYQPEAAGDYHL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=134, Percent_Identity=38.8059701492537, Blast_Score=99, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 15857; Mature: 15857

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTQKAQRQVVVTEFDMERLEALIDKARSTQTRDSKNLKELGEELVRAEVVDPAGIPPD
CCCHHHHHHEEEEEHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
VITMNSKVCLQDLDSEEELVYTLVFPNEADLASGKISILAPVGTAMIGFRTGDRITWPVP
EEEECCCHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCEEEECCC
GGMKNLKVKKILYQPEAAGDYHL
CCCCCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKNTQKAQRQVVVTEFDMERLEALIDKARSTQTRDSKNLKELGEELVRAEVVDPAGIPPD
CCCHHHHHHEEEEEHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
VITMNSKVCLQDLDSEEELVYTLVFPNEADLASGKISILAPVGTAMIGFRTGDRITWPVP
EEEECCCHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCEEEECCC
GGMKNLKVKKILYQPEAAGDYHL
CCCCCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]