| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is pulQ [H]
Identifier: 197117672
GI number: 197117672
Start: 1481266
End: 1483872
Strand: Direct
Name: pulQ [H]
Synonym: Gbem_1284
Alternate gene names: 197117672
Gene position: 1481266-1483872 (Clockwise)
Preceding gene: 197117671
Following gene: 197117673
Centisome position: 32.1
GC content: 61.72
Gene sequence:
>2607_bases ATGCATAGACCAAGACTGATCTTAACCGTGATGCTGGTGGCACTGGCTCTCTCGGGCTGCACGTCCGGCCGCACCGCTTT CAGCAAGGCGGAGAAGCTGGAGCGAGAGGGAAACCTGGACGCCGCGCTGGTGAAGTACGCCGAGGTAGCCGCTGCCAACC CCGATATCGGCGAGTACCGGGTGAAGCTTCTGAACGTCACCGAGACTGCGGCTCGCGCGCATTTCAAGAAGGGGGAGGAG TTCTTCGCCAAGAAGAACTACGACGAAGCCCTCAGGGAGTTTCAAAGCGCCTACGCCATGGACCCCACGCACGTCCTGGC CAAGAATCAGGCCGACCAGGTGCTTAAGCTGAGAAACGCCCAGACCTACCTGCAGGAGGGGCTCGACTTCGAGAAGAACC GCAAACCGCGGGAGGCGATGATCGCCTTCAAGCACGCCCTCGAATTCGACCCGAGCAACAAGGAGGTGAAGGAAGGGCTG GATCGCATCATCGCCAACAAGCGCCAGAAGCTGGACGGTTTCGAGCTGAACCTGAAGTCGAACAAGCCGATCACCCTCAA GTTCCGCGATGCCAAGCTCAAGGAGATCTTCACCATCCTTTCCCAGCTCTCCGGCATCAACTTCGTCTTCGACGACGCGG TGAAGGACGTGAACATCACGCTGCACCTGGAGAACGGCTCATTCCAGCAGGCGATGGAACTGATCACCGGGATGCAGAAG CTGGACAAGAAGATCCTGAACGAGAGCACCATCATCATCTATCCGAAGACCCCGGACAAGGTCAAGCAGTACGAAGAGCT CTTCCTGCAGACCTTCTACCTGAACAAGCTGGACGCGAAGAAGGCGGTCAACCTGGTGCGCACCATGCTCCAGGTGAAGA AGATCTACGTGAACGAGGAGGCGAACGCCCTCGTCATCCGCGACACCCCCGAGGTCATCGAGGTGGCGCGCAAGATTCTG GAGGCCAACGACGTTCCCGATGCCGAGGTGCTCCTCGAGGTGGAGGTGTTCGAGCTCTCCAAGCAGAACGCCGAGACCTT CGGACTGCTCCTCTCCCGGTACGCCACCTCCCTGGGGGTGACAGCTCCGGGAAGCACCGGCACCAACCCGTTCCTGGCTG ACACGCTGGGAGCAGTCACCACGACGACCACCACAGGTACGACCACCTCTTCCGCTGGGCCGTCCAACCTGTTGAACGTG TTCAACCTGAGGGGTTATAACGGCTACTTGACCGTACCCAACGCCACCTTCAACTTCGGCAAGACCCTCTCCAACGGCGA GACCCTCTCCAACCCGAAAATCAGGGTGAAGAACCGAGAGAAGGCGAAGTTCAACGTCGGCACCAGGGTCCCTATCACCA CCACCTCTTCGCCTTCCGGCGGCGGCGTCAGCGTCAACGTCCAGTACGTCGACGTCGGGGTCAAGGTGAACGCCGAGCCG ACCATCCAGCTCAACAACGAGGTCGCCATCAAGCTGGGGCTCGAGGTCAGCTCCATCCTCAACGAGAAGACTATCGGCAC CGACCAGGCCACCACCGTGGTCACCATCGGCACCAGGAACCTCGACACCGTGCTCTCACTCAAGGACGGCGAGACCAGCA TCATCGGGGGGCTGATCCAGAAGACCCAGACCGACAGCAAGAGCAAGGTCTTCTTGTTGGGCGACATCCCGATCCTCGGC CCTTTGTTCAGCAACACCAGCGACAAGAAGGATAAGACCGAGCTGCTGCTTGCCATCACCCCCAGAATCGTGCGCGGCGT GACCGTTCCCGACAACGACGTCGCCGCTTTCTGGTCCGGCCGCGAGGACGAGCCTTCGTCGCATCAGCCGTATTCCTCCT TCATGGAGCCTGACTTCGTCAACCCCGAGGCCGCCGAGGGTGCCGCGGCCCCTGCCGCAGCCAAGCCCGCTCCCAGGGCG CTGCCTAACCTGGTGCCGGTCCAGAAGATCGTGCCGGCTCCTGTTCCGGCCCCGGCTCCTGCTCCTGCCGGCGCTCCTGC TCCTGCTCCTGCCGGCGCTCCGGCCCCGGCCCCAGGCGGAGCTGCCGCGGCAGTTCCAGCACCTGCCCCTGGCGCCGTTC CGGCCGCAGGGGACGTCCCGGTGCCCGCGCCTGTCCCTGTCCCTGTGCCCGCTCCGGTACCGGTACCGGTTCCCGCTCCC GCTCCAGCCGCACCCGCAGCCGCGAAACAGCCGCTTCTGACCGATTCGCTGATCGCGCTGAGCCTTCCGGCCAAGGTGAA GCTGAACGACCAGTTCAGCGTGCAGGTGAATGGATCAGGGATGAGGGATTTGTACAAGGCGGTCTTCGTGCTCTCTTACG ATCCAAAGCTCCTGGACGCCATTTCGCAATCCGAGGGGAACCTCTTGAAACAACCCGGGAAGCCTTCCACTTTCCAGGCA TTCGCGGACAAGAAAAAGGGTGAGATCTGGATGTCCGGCATGCGCGAGGAGCCGACCGGAACCGCCAACGGCATCCTGGC CAACATCAGCTTCAAGGCGATAGGGACGGGATCGGCCGCTGTCTCCGTGAACAACACCAACTTCAGCAAAAAGACTGGCG AGGATATCCCGGTCACCGCCTTCAAGTCCGTAGTGGAGGTACAGTAG
Upstream 100 bases:
>100_bases ACCATTAAGTCCCTGACCACCGACCAGCAGATGGTGATACCTCTGGTCGAGAACAGGTCGCTTGCGCGCCGCACCAAGTA ATAGGTTAAGGAGCAACTGC
Downstream 100 bases:
>100_bases CCTTTCGAGGCTTTCAGATCATGTGGAAAATCCTTGACGACAAGCGCGGGTTGAGCCTGATCGAGCTGGTGGTGACGCTG TCCATACTCATCATCCTCTC
Product: type II secretion system secretin lipoprotein PulQ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 868; Mature: 868
Protein sequence:
>868_residues MHRPRLILTVMLVALALSGCTSGRTAFSKAEKLEREGNLDAALVKYAEVAAANPDIGEYRVKLLNVTETAARAHFKKGEE FFAKKNYDEALREFQSAYAMDPTHVLAKNQADQVLKLRNAQTYLQEGLDFEKNRKPREAMIAFKHALEFDPSNKEVKEGL DRIIANKRQKLDGFELNLKSNKPITLKFRDAKLKEIFTILSQLSGINFVFDDAVKDVNITLHLENGSFQQAMELITGMQK LDKKILNESTIIIYPKTPDKVKQYEELFLQTFYLNKLDAKKAVNLVRTMLQVKKIYVNEEANALVIRDTPEVIEVARKIL EANDVPDAEVLLEVEVFELSKQNAETFGLLLSRYATSLGVTAPGSTGTNPFLADTLGAVTTTTTTGTTTSSAGPSNLLNV FNLRGYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGGVSVNVQYVDVGVKVNAEP TIQLNNEVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDSKSKVFLLGDIPILG PLFSNTSDKKDKTELLLAITPRIVRGVTVPDNDVAAFWSGREDEPSSHQPYSSFMEPDFVNPEAAEGAAAPAAAKPAPRA LPNLVPVQKIVPAPVPAPAPAPAGAPAPAPAGAPAPAPGGAAAAVPAPAPGAVPAAGDVPVPAPVPVPVPAPVPVPVPAP APAAPAAAKQPLLTDSLIALSLPAKVKLNDQFSVQVNGSGMRDLYKAVFVLSYDPKLLDAISQSEGNLLKQPGKPSTFQA FADKKKGEIWMSGMREEPTGTANGILANISFKAIGTGSAAVSVNNTNFSKKTGEDIPVTAFKSVVEVQ
Sequences:
>Translated_868_residues MHRPRLILTVMLVALALSGCTSGRTAFSKAEKLEREGNLDAALVKYAEVAAANPDIGEYRVKLLNVTETAARAHFKKGEE FFAKKNYDEALREFQSAYAMDPTHVLAKNQADQVLKLRNAQTYLQEGLDFEKNRKPREAMIAFKHALEFDPSNKEVKEGL DRIIANKRQKLDGFELNLKSNKPITLKFRDAKLKEIFTILSQLSGINFVFDDAVKDVNITLHLENGSFQQAMELITGMQK LDKKILNESTIIIYPKTPDKVKQYEELFLQTFYLNKLDAKKAVNLVRTMLQVKKIYVNEEANALVIRDTPEVIEVARKIL EANDVPDAEVLLEVEVFELSKQNAETFGLLLSRYATSLGVTAPGSTGTNPFLADTLGAVTTTTTTGTTTSSAGPSNLLNV FNLRGYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGGVSVNVQYVDVGVKVNAEP TIQLNNEVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDSKSKVFLLGDIPILG PLFSNTSDKKDKTELLLAITPRIVRGVTVPDNDVAAFWSGREDEPSSHQPYSSFMEPDFVNPEAAEGAAAPAAAKPAPRA LPNLVPVQKIVPAPVPAPAPAPAGAPAPAPAGAPAPAPGGAAAAVPAPAPGAVPAAGDVPVPAPVPVPVPAPVPVPVPAP APAAPAAAKQPLLTDSLIALSLPAKVKLNDQFSVQVNGSGMRDLYKAVFVLSYDPKLLDAISQSEGNLLKQPGKPSTFQA FADKKKGEIWMSGMREEPTGTANGILANISFKAIGTGSAAVSVNNTNFSKKTGEDIPVTAFKSVVEVQ >Mature_868_residues MHRPRLILTVMLVALALSGCTSGRTAFSKAEKLEREGNLDAALVKYAEVAAANPDIGEYRVKLLNVTETAARAHFKKGEE FFAKKNYDEALREFQSAYAMDPTHVLAKNQADQVLKLRNAQTYLQEGLDFEKNRKPREAMIAFKHALEFDPSNKEVKEGL DRIIANKRQKLDGFELNLKSNKPITLKFRDAKLKEIFTILSQLSGINFVFDDAVKDVNITLHLENGSFQQAMELITGMQK LDKKILNESTIIIYPKTPDKVKQYEELFLQTFYLNKLDAKKAVNLVRTMLQVKKIYVNEEANALVIRDTPEVIEVARKIL EANDVPDAEVLLEVEVFELSKQNAETFGLLLSRYATSLGVTAPGSTGTNPFLADTLGAVTTTTTTGTTTSSAGPSNLLNV FNLRGYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGGVSVNVQYVDVGVKVNAEP TIQLNNEVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDSKSKVFLLGDIPILG PLFSNTSDKKDKTELLLAITPRIVRGVTVPDNDVAAFWSGREDEPSSHQPYSSFMEPDFVNPEAAEGAAAPAAAKPAPRA LPNLVPVQKIVPAPVPAPAPAPAGAPAPAPAGAPAPAPGGAAAAVPAPAPGAVPAAGDVPVPAPVPVPVPAPVPVPVPAP APAAPAAAKQPLLTDSLIALSLPAKVKLNDQFSVQVNGSGMRDLYKAVFVLSYDPKLLDAISQSEGNLLKQPGKPSTFQA FADKKKGEIWMSGMREEPTGTANGILANISFKAIGTGSAAVSVNNTNFSKKTGEDIPVTAFKSVVEVQ
Specific function: Required for type IV pilus biogenesis and competence. Could function as a pore for exit of the pilus but also as a channel for entry of heme and antimicrobial agents and uptake of transforming DNA [H]
COG id: COG4796
COG function: function code U; Type II secretory pathway, component HofQ
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI87082242, Length=309, Percent_Identity=29.126213592233, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1789793, Length=416, Percent_Identity=21.3942307692308, Blast_Score=78, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR013355 - InterPro: IPR011662 - InterPro: IPR004846 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N; PF07660 STN [H]
EC number: NA
Molecular weight: Translated: 92836; Mature: 92836
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHRPRLILTVMLVALALSGCTSGRTAFSKAEKLEREGNLDAALVKYAEVAAANPDIGEYR CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEE VKLLNVTETAARAHFKKGEEFFAKKNYDEALREFQSAYAMDPTHVLAKNQADQVLKLRNA EEEEEHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHH QTYLQEGLDFEKNRKPREAMIAFKHALEFDPSNKEVKEGLDRIIANKRQKLDGFELNLKS HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC NKPITLKFRDAKLKEIFTILSQLSGINFVFDDAVKDVNITLHLENGSFQQAMELITGMQK CCEEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHH LDKKILNESTIIIYPKTPDKVKQYEELFLQTFYLNKLDAKKAVNLVRTMLQVKKIYVNEE HHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC ANALVIRDTPEVIEVARKILEANDVPDAEVLLEVEVFELSKQNAETFGLLLSRYATSLGV CCEEEEECCHHHHHHHHHHHHCCCCCCHHEEEEEEEEHHCCCCHHHHHHHHHHHHHHCCC TAPGSTGTNPFLADTLGAVTTTTTTGTTTSSAGPSNLLNVFNLRGYNGYLTVPNATFNFG CCCCCCCCCCHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHEECCCCCEEECCCCCCCCC KTLSNGETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGGVSVNVQYVDVGVKVNAEP CCCCCCCCCCCCEEEECCCCCCEEECCCCCEEEECCCCCCCCEEEEEEEEEEEEEECCCC TIQLNNEVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLDTVLSLKDGETSIIGGLIQ EEEECCEEEEEECCCHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHH KTQTDSKSKVFLLGDIPILGPLFSNTSDKKDKTELLLAITPRIVRGVTVPDNDVAAFWSG HCCCCCCCEEEEEECCCEECHHHCCCCCCCCHHEEEEEECHHHHCCCCCCCCCEEEEECC REDEPSSHQPYSSFMEPDFVNPEAAEGAAAPAAAKPAPRALPNLVPVQKIVPAPVPAPAP CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHCCCCCCCCCC APAGAPAPAPAGAPAPAPGGAAAAVPAPAPGAVPAAGDVPVPAPVPVPVPAPVPVPVPAP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APAAPAAAKQPLLTDSLIALSLPAKVKLNDQFSVQVNGSGMRDLYKAVFVLSYDPKLLDA CCCCCCCCCCCCCCCCEEEEECCCEEEECCEEEEEECCCCHHHHHHHHEEEECCHHHHHH ISQSEGNLLKQPGKPSTFQAFADKKKGEIWMSGMREEPTGTANGILANISFKAIGTGSAA HHCCCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEECCCEE VSVNNTNFSKKTGEDIPVTAFKSVVEVQ EEECCCCCCCCCCCCCCHHHHHHHHCCC >Mature Secondary Structure MHRPRLILTVMLVALALSGCTSGRTAFSKAEKLEREGNLDAALVKYAEVAAANPDIGEYR CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEE VKLLNVTETAARAHFKKGEEFFAKKNYDEALREFQSAYAMDPTHVLAKNQADQVLKLRNA EEEEEHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHH QTYLQEGLDFEKNRKPREAMIAFKHALEFDPSNKEVKEGLDRIIANKRQKLDGFELNLKS HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC NKPITLKFRDAKLKEIFTILSQLSGINFVFDDAVKDVNITLHLENGSFQQAMELITGMQK CCEEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHH LDKKILNESTIIIYPKTPDKVKQYEELFLQTFYLNKLDAKKAVNLVRTMLQVKKIYVNEE HHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC ANALVIRDTPEVIEVARKILEANDVPDAEVLLEVEVFELSKQNAETFGLLLSRYATSLGV CCEEEEECCHHHHHHHHHHHHCCCCCCHHEEEEEEEEHHCCCCHHHHHHHHHHHHHHCCC TAPGSTGTNPFLADTLGAVTTTTTTGTTTSSAGPSNLLNVFNLRGYNGYLTVPNATFNFG CCCCCCCCCCHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHEECCCCCEEECCCCCCCCC KTLSNGETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGGVSVNVQYVDVGVKVNAEP CCCCCCCCCCCCEEEECCCCCCEEECCCCCEEEECCCCCCCCEEEEEEEEEEEEEECCCC TIQLNNEVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLDTVLSLKDGETSIIGGLIQ EEEECCEEEEEECCCHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHH KTQTDSKSKVFLLGDIPILGPLFSNTSDKKDKTELLLAITPRIVRGVTVPDNDVAAFWSG HCCCCCCCEEEEEECCCEECHHHCCCCCCCCHHEEEEEECHHHHCCCCCCCCCEEEEECC REDEPSSHQPYSSFMEPDFVNPEAAEGAAAPAAAKPAPRALPNLVPVQKIVPAPVPAPAP CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHCCCCCCCCCC APAGAPAPAPAGAPAPAPGGAAAAVPAPAPGAVPAAGDVPVPAPVPVPVPAPVPVPVPAP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APAAPAAAKQPLLTDSLIALSLPAKVKLNDQFSVQVNGSGMRDLYKAVFVLSYDPKLLDA CCCCCCCCCCCCCCCCEEEEECCCEEEECCEEEEEECCCCHHHHHHHHEEEECCHHHHHH ISQSEGNLLKQPGKPSTFQAFADKKKGEIWMSGMREEPTGTANGILANISFKAIGTGSAA HHCCCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEECCCEE VSVNNTNFSKKTGEDIPVTAFKSVVEVQ EEECCCCCCCCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]