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The map label for this gene is cph2 [H]

Identifier: 197117590

GI number: 197117590

Start: 1396236

End: 1397306

Strand: Direct

Name: cph2 [H]

Synonym: Gbem_1202

Alternate gene names: 197117590

Gene position: 1396236-1397306 (Clockwise)

Preceding gene: 197117587

Following gene: 197117591

Centisome position: 30.25

GC content: 60.41

Gene sequence:

>1071_bases
ATGTCCGAGTGTAGTTGCGGTACCCAAAAAGAATTGCTCGAATCGCAGGTTAAGGCGCTGAAGGACCTGATAGAGGTCGC
CAAGGCGGTCGTCTCGACGCTCGATCTGGATACGGTGCTGCAGGCTATCCTCAACAGTGCCATGGGATTTGCCGAGACCC
CCGCCGGAAGCGTCGCCCTTTATTACGACGCCAAGCGGGAGCTGAGCCTGCATGCCCACTCGGGGCTGACGGCGGACTTC
GTCAAGAAGGAGCGTTGGGAGGTGGCCCCGGGCGGGCTTACCGAACAAGTGCTCTCTGCGGGGGAGATCTTCTTGATCGA
GGACACGGAGAAGACTCCGTTCTTCAAGAACCCGATAGCGCTCAACGAGGGTATCCGCTCTCTGGTCTGCGTGCCGCTCA
TCTTCCAGTCGCGCATCGTCGGGATACTCTACCTTGACGATTTTAAGCCCAGGGAGTTCGACCGGGAGAAGATGAACATG
CTCTCGATCCTCGCCTCCTTCGCCGCCATGGCGATACACAACGCGACGCTGCACAAGCGGACCAAGCTACTGGCGATCAC
CGACTCGCTCACCGGGCTGCACAACCACCGCTACTTCAAGCAATACTTCAGGCAGGAGATGGGGCGTGCCAAGCGCTACC
ACAAGCCCTTCTCCATCATCATGATGGACGTGGACGACTTCAAGTCCTACAACGACAGCTACGGCCACGCAACCGGCGAC
AGGTTGCTGGCCCTCATGGGCGAGATCATCCTGGAGACCATCCGCGGCGTGGACGTCGCCTTCCGCTACGGCGGGGAAGA
ATTCATCGTGCTGCTCCCCGAGACCACGCTTGACAAGGCTATCCTCGCCGCCGAGCGTCTGCGCGAAAGCGTGCAGGCCG
GGACTGCGAGCCGGCCCGTGGACGGGTCAGGCCGCGGCGTGACCGTCAGCATCGGCGTGGCGAGCTATCCGGACAATGCC
GACAAGATGGACGAACTCTTCAACATCGTCGATTCGCTCCTTTACCTTGCCAAGCGCTGCGGCAAGAACAAGGTCTATCA
CCAGGAAAGCCTACAGATCCCCGCGCCATGA

Upstream 100 bases:

>100_bases
AAAATCTCTGGCATCGGGGCGGATAACTCCCTATGCCATTTACAACATGGCCGGCGCTGTGCTATTAATATCCGCTTCTA
AATTTCTCGACGGAGCTGAC

Downstream 100 bases:

>100_bases
ACCGATACCGCATACATTGTCTGCCGGGCCTCCTGCTAGTGGGGGCCCTTTACTTTGGCGCGCCCGTTTTGGCCGCGACG
CCCACACCTGCCGCTGCGCC

Product: GAF domain-containing sensor diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSECSCGTQKELLESQVKALKDLIEVAKAVVSTLDLDTVLQAILNSAMGFAETPAGSVALYYDAKRELSLHAHSGLTADF
VKKERWEVAPGGLTEQVLSAGEIFLIEDTEKTPFFKNPIALNEGIRSLVCVPLIFQSRIVGILYLDDFKPREFDREKMNM
LSILASFAAMAIHNATLHKRTKLLAITDSLTGLHNHRYFKQYFRQEMGRAKRYHKPFSIIMMDVDDFKSYNDSYGHATGD
RLLALMGEIILETIRGVDVAFRYGGEEFIVLLPETTLDKAILAAERLRESVQAGTASRPVDGSGRGVTVSIGVASYPDNA
DKMDELFNIVDSLLYLAKRCGKNKVYHQESLQIPAP

Sequences:

>Translated_356_residues
MSECSCGTQKELLESQVKALKDLIEVAKAVVSTLDLDTVLQAILNSAMGFAETPAGSVALYYDAKRELSLHAHSGLTADF
VKKERWEVAPGGLTEQVLSAGEIFLIEDTEKTPFFKNPIALNEGIRSLVCVPLIFQSRIVGILYLDDFKPREFDREKMNM
LSILASFAAMAIHNATLHKRTKLLAITDSLTGLHNHRYFKQYFRQEMGRAKRYHKPFSIIMMDVDDFKSYNDSYGHATGD
RLLALMGEIILETIRGVDVAFRYGGEEFIVLLPETTLDKAILAAERLRESVQAGTASRPVDGSGRGVTVSIGVASYPDNA
DKMDELFNIVDSLLYLAKRCGKNKVYHQESLQIPAP
>Mature_355_residues
SECSCGTQKELLESQVKALKDLIEVAKAVVSTLDLDTVLQAILNSAMGFAETPAGSVALYYDAKRELSLHAHSGLTADFV
KKERWEVAPGGLTEQVLSAGEIFLIEDTEKTPFFKNPIALNEGIRSLVCVPLIFQSRIVGILYLDDFKPREFDREKMNML
SILASFAAMAIHNATLHKRTKLLAITDSLTGLHNHRYFKQYFRQEMGRAKRYHKPFSIIMMDVDDFKSYNDSYGHATGDR
LLALMGEIILETIRGVDVAFRYGGEEFIVLLPETTLDKAILAAERLRESVQAGTASRPVDGSGRGVTVSIGVASYPDNAD
KMDELFNIVDSLLYLAKRCGKNKVYHQESLQIPAP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=37.9746835443038, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787262, Length=190, Percent_Identity=34.7368421052632, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=40.5555555555556, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=35.0877192982456, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=30.1204819277108, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787802, Length=193, Percent_Identity=30.0518134715026, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788381, Length=168, Percent_Identity=31.547619047619, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=31.4814814814815, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=201, Percent_Identity=27.363184079602, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=26.4150943396226, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=28.9017341040462, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081977, Length=229, Percent_Identity=27.0742358078603, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 39588; Mature: 39457

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSECSCGTQKELLESQVKALKDLIEVAKAVVSTLDLDTVLQAILNSAMGFAETPAGSVAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEE
YYDAKRELSLHAHSGLTADFVKKERWEVAPGGLTEQVLSAGEIFLIEDTEKTPFFKNPIA
EEECCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCH
LNEGIRSLVCVPLIFQSRIVGILYLDDFKPREFDREKMNMLSILASFAAMAIHNATLHKR
HHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TKLLAITDSLTGLHNHRYFKQYFRQEMGRAKRYHKPFSIIMMDVDDFKSYNDSYGHATGD
HEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCCCCHHH
RLLALMGEIILETIRGVDVAFRYGGEEFIVLLPETTLDKAILAAERLRESVQAGTASRPV
HHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCC
DGSGRGVTVSIGVASYPDNADKMDELFNIVDSLLYLAKRCGKNKVYHQESLQIPAP
CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SECSCGTQKELLESQVKALKDLIEVAKAVVSTLDLDTVLQAILNSAMGFAETPAGSVAL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEE
YYDAKRELSLHAHSGLTADFVKKERWEVAPGGLTEQVLSAGEIFLIEDTEKTPFFKNPIA
EEECCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCH
LNEGIRSLVCVPLIFQSRIVGILYLDDFKPREFDREKMNMLSILASFAAMAIHNATLHKR
HHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TKLLAITDSLTGLHNHRYFKQYFRQEMGRAKRYHKPFSIIMMDVDDFKSYNDSYGHATGD
HEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCCCCHHH
RLLALMGEIILETIRGVDVAFRYGGEEFIVLLPETTLDKAILAAERLRESVQAGTASRPV
HHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCC
DGSGRGVTVSIGVASYPDNADKMDELFNIVDSLLYLAKRCGKNKVYHQESLQIPAP
CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]