| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117546
Identifier: 197117546
GI number: 197117546
Start: 1347700
End: 1349064
Strand: Direct
Name: 197117546
Synonym: Gbem_1158
Alternate gene names: NA
Gene position: 1347700-1349064 (Clockwise)
Preceding gene: 308535221
Following gene: 197117547
Centisome position: 29.2
GC content: 63.81
Gene sequence:
>1365_bases ATGATGCACTTCCCCGGCCTGCCTACCTGCCTTGTCTGCGCCGGGCTCCTGTTGCCGGCTCTTGCGGGATGTCAACAGCA GGAGCAAAGCCGCGCTTATCCGGCACCCACCGTAAAGGGTGCCATCGCTACCCCCGCCGTGCTGGCGACCATCCCCCCCG ACGCTGTATTGACTCCCCCAGGCAGCAGCGATCCCGCCAAGATCGTTGTGAATGAGGAGGGTAAGGGGGCTGTTTACGTT GCATATCGTAACGGAAAGTCGGTCGTGGTGCATAACGGCCGCTCCGGTCCCGAGTACGACAAAGTGGCCAACGTATCGCT CAGTCCCGACGGGCAGCACGTGGCCTACGGTGTGACCGTGCAGGAGAAACAGCGGCGCATCGTGTGGGACGGGAGGGAAG GGGATGTCTACGTCGATGTCTGGAATCCCGTCTTCAGTCCGGACAACCGTCACATAGCCTACATCGCCCAGATCGGTGAG GACTCACACATCGTTGTAGATGGCAGCATCACCGGCGCCTACCCCTCGCTTCTCAGCGGCAACCCGGTCTTTGCCGCCGA TGCCTCGCACGTCGCCTTTCACCTCACCCCTGGTGCGGGCGGCAAGGGAAGGCTCGTTGTCGCGAGCCGCGACCTCAAGC ACCTGAAGAGTTGGGACTGCGTGAACCACGAGATGGTGCTGGACGCGGACAGGACGCGCGCGGCGGCGGTCGTGCCGGCC GAAGGGAAGCAGCGCGCGGTGATCGTGAGCCTGCTTAATCCCGAAGAAATCAAGGAAGGTCCCCTCTACGAAGAGGTTAC CGGTCTCACCCTGAGCCCCGACGGCGCCTCGTTCGCCTACGTGGCCGTGAAAGAGGGTAGGCGATACCTGGTCCTCGACG GTAAGGAGGAGCCTCTCCCGGAGGGCGAAATGCGCCAACCCCCGGTGGTCAAGCCGGGCGGCAAAGGGGCGGGGATCATC CTGACGACGGGCAAGGGTTTCCGCCTGCACCCGGGCTTTGGCGGCGGCAAAGACGGCAGGAGCTATCAGGAGGCCGCCGG TCTCATTTACAGCAAGGACGGCAGCCAGACCGCATACCTGGCGCGCAGGGAGAAGAGCATCTTCGCCGTGGTCAACGGGA AGGAAAGCCCCGGGTACGACATGATCGTAACCCCGAAGTTCTCCCCCGACGGCAGGTTCCTGGTCTGCCGCGCCCGCAAG GACGGCAGGCGCTTCGTTGTGGTGCTGGACCGTGACGGCAAGGTGGTCCGAGAGCACCCCCGCTACGAGATGGTGTTCGA CGTTACCTTCACCCCGGACGGCAAATCGGTGGCGTATGGCATCAAGGAGGGGCGGCAGCTCGCCTGGGAGGTGGAAAAGC TATGA
Upstream 100 bases:
>100_bases GCCAGCCGGTTAAGTTGCTTGCCATTCTCCCGCAATTTCGGGTATTCTGGCGGCACTTCATTAAGTTGTTGGTGGTTTAC TCGTTCATGGAGAACACAAC
Downstream 100 bases:
>100_bases GGCGCTTGCTTTTCGCCCTGAACCTCTCCGCGCTGCTCCTCGCGCTGCTTGTCGCCCCTGCCCTCGCGGCGCCGGCCGAT CAGGCCGAGCGGAAACTACA
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 454; Mature: 454
Protein sequence:
>454_residues MMHFPGLPTCLVCAGLLLPALAGCQQQEQSRAYPAPTVKGAIATPAVLATIPPDAVLTPPGSSDPAKIVVNEEGKGAVYV AYRNGKSVVVHNGRSGPEYDKVANVSLSPDGQHVAYGVTVQEKQRRIVWDGREGDVYVDVWNPVFSPDNRHIAYIAQIGE DSHIVVDGSITGAYPSLLSGNPVFAADASHVAFHLTPGAGGKGRLVVASRDLKHLKSWDCVNHEMVLDADRTRAAAVVPA EGKQRAVIVSLLNPEEIKEGPLYEEVTGLTLSPDGASFAYVAVKEGRRYLVLDGKEEPLPEGEMRQPPVVKPGGKGAGII LTTGKGFRLHPGFGGGKDGRSYQEAAGLIYSKDGSQTAYLARREKSIFAVVNGKESPGYDMIVTPKFSPDGRFLVCRARK DGRRFVVVLDRDGKVVREHPRYEMVFDVTFTPDGKSVAYGIKEGRQLAWEVEKL
Sequences:
>Translated_454_residues MMHFPGLPTCLVCAGLLLPALAGCQQQEQSRAYPAPTVKGAIATPAVLATIPPDAVLTPPGSSDPAKIVVNEEGKGAVYV AYRNGKSVVVHNGRSGPEYDKVANVSLSPDGQHVAYGVTVQEKQRRIVWDGREGDVYVDVWNPVFSPDNRHIAYIAQIGE DSHIVVDGSITGAYPSLLSGNPVFAADASHVAFHLTPGAGGKGRLVVASRDLKHLKSWDCVNHEMVLDADRTRAAAVVPA EGKQRAVIVSLLNPEEIKEGPLYEEVTGLTLSPDGASFAYVAVKEGRRYLVLDGKEEPLPEGEMRQPPVVKPGGKGAGII LTTGKGFRLHPGFGGGKDGRSYQEAAGLIYSKDGSQTAYLARREKSIFAVVNGKESPGYDMIVTPKFSPDGRFLVCRARK DGRRFVVVLDRDGKVVREHPRYEMVFDVTFTPDGKSVAYGIKEGRQLAWEVEKL >Mature_454_residues MMHFPGLPTCLVCAGLLLPALAGCQQQEQSRAYPAPTVKGAIATPAVLATIPPDAVLTPPGSSDPAKIVVNEEGKGAVYV AYRNGKSVVVHNGRSGPEYDKVANVSLSPDGQHVAYGVTVQEKQRRIVWDGREGDVYVDVWNPVFSPDNRHIAYIAQIGE DSHIVVDGSITGAYPSLLSGNPVFAADASHVAFHLTPGAGGKGRLVVASRDLKHLKSWDCVNHEMVLDADRTRAAAVVPA EGKQRAVIVSLLNPEEIKEGPLYEEVTGLTLSPDGASFAYVAVKEGRRYLVLDGKEEPLPEGEMRQPPVVKPGGKGAGII LTTGKGFRLHPGFGGGKDGRSYQEAAGLIYSKDGSQTAYLARREKSIFAVVNGKESPGYDMIVTPKFSPDGRFLVCRARK DGRRFVVVLDRDGKVVREHPRYEMVFDVTFTPDGKSVAYGIKEGRQLAWEVEKL
Specific function: Unknown
COG id: COG2319
COG function: function code R; FOG: WD40 repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48891; Mature: 48891
Theoretical pI: Translated: 7.93; Mature: 7.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMHFPGLPTCLVCAGLLLPALAGCQQQEQSRAYPAPTVKGAIATPAVLATIPPDAVLTPP CCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEECCC GSSDPAKIVVNEEGKGAVYVAYRNGKSVVVHNGRSGPEYDKVANVSLSPDGQHVAYGVTV CCCCCCEEEEECCCCCEEEEEEECCCEEEEECCCCCCCHHHEEEEEECCCCCEEEEEEEE QEKQRRIVWDGREGDVYVDVWNPVFSPDNRHIAYIAQIGEDSHIVVDGSITGAYPSLLSG CCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHCC NPVFAADASHVAFHLTPGAGGKGRLVVASRDLKHLKSWDCVNHEMVLDADRTRAAAVVPA CEEEEECCCEEEEEEECCCCCCCEEEEEECCHHHHHCCCCCCCEEEEECCCCCEEEEECC EGKQRAVIVSLLNPEEIKEGPLYEEVTGLTLSPDGASFAYVAVKEGRRYLVLDGKEEPLP CCCCCEEEEEECCHHHHCCCCCHHHHCCCEECCCCCCEEEEEEECCCEEEEECCCCCCCC EGEMRQPPVVKPGGKGAGIILTTGKGFRLHPGFGGGKDGRSYQEAAGLIYSKDGSQTAYL CCCCCCCCEECCCCCCCEEEEECCCCEEECCCCCCCCCCCCHHHHCCEEEECCCCCEEEE ARREKSIFAVVNGKESPGYDMIVTPKFSPDGRFLVCRARKDGRRFVVVLDRDGKVVREHP EECCCEEEEEEECCCCCCCCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCC RYEMVFDVTFTPDGKSVAYGIKEGRQLAWEVEKL CEEEEEEEEECCCCCEEEEECCCCCEEEEEEECC >Mature Secondary Structure MMHFPGLPTCLVCAGLLLPALAGCQQQEQSRAYPAPTVKGAIATPAVLATIPPDAVLTPP CCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEECCC GSSDPAKIVVNEEGKGAVYVAYRNGKSVVVHNGRSGPEYDKVANVSLSPDGQHVAYGVTV CCCCCCEEEEECCCCCEEEEEEECCCEEEEECCCCCCCHHHEEEEEECCCCCEEEEEEEE QEKQRRIVWDGREGDVYVDVWNPVFSPDNRHIAYIAQIGEDSHIVVDGSITGAYPSLLSG CCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHCC NPVFAADASHVAFHLTPGAGGKGRLVVASRDLKHLKSWDCVNHEMVLDADRTRAAAVVPA CEEEEECCCEEEEEEECCCCCCCEEEEEECCHHHHHCCCCCCCEEEEECCCCCEEEEECC EGKQRAVIVSLLNPEEIKEGPLYEEVTGLTLSPDGASFAYVAVKEGRRYLVLDGKEEPLP CCCCCEEEEEECCHHHHCCCCCHHHHCCCEECCCCCCEEEEEEECCCEEEEECCCCCCCC EGEMRQPPVVKPGGKGAGIILTTGKGFRLHPGFGGGKDGRSYQEAAGLIYSKDGSQTAYL CCCCCCCCEECCCCCCCEEEEECCCCEEECCCCCCCCCCCCHHHHCCEEEECCCCCEEEE ARREKSIFAVVNGKESPGYDMIVTPKFSPDGRFLVCRARKDGRRFVVVLDRDGKVVREHP EECCCEEEEEEECCCCCCCCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCC RYEMVFDVTFTPDGKSVAYGIKEGRQLAWEVEKL CEEEEEEEEECCCCCEEEEECCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA