Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

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The map label for this gene is 197117541

Identifier: 197117541

GI number: 197117541

Start: 1332823

End: 1335699

Strand: Direct

Name: 197117541

Synonym: Gbem_1153

Alternate gene names: NA

Gene position: 1332823-1335699 (Clockwise)

Preceding gene: 197117540

Following gene: 197117542

Centisome position: 28.88

GC content: 64.72

Gene sequence:

>2877_bases
ATGTTACCTAAGTACGGAGGACGATGTTTGTTCGGGTTGGCACTTCTGGTGCTGACACTGATGACGCTTGGTGCCGGACA
GGCACAAGCTGCTTCGCAGTACAGCTATGACTGTACCTTCTGTCACCAAATGCCGCCGCTGGATTCCGCCAACGCGAAGA
AGGACCCCAACACGGGCGCCATTCCCGGCAACCACCAGGGTCACGCTTCGGCAGCGGTCAATTCCTGCGCCAAGTGCCAC
GGCGACGTGAGCGGCTACGCCATGGGCCACAGGAACAAGACCATCGAGCTTGCCGACGGCATCGGCTACTCGCGGAAGAT
CGCAGCCGGGTTCGTGAACCAGACCTCGGTACCGCCGACCCCGATGGGTTCCTGCTCCACCGCGGCCTGCCACAGTAACG
GCAAGGGCACCCTTAAGGCCACCCCGGCCTGGGGCGCTGCACCGTTCCAGGCTCCCGGCGACTGCTCCCAGTGCCACGAC
GTAGCTCCGGCTACCGGCAACCACCCGACACTCAATAGCAAGCACGCCTCCTACTTCGGCACCGGTACCGGCTCCTGCGT
TAAGTGCCATACCGACCACAGCGCTCAGGCAAAGCCCTTCAGCCACGCAACCTCCGCCGGCCGTGCCATCGAAGTGGTGC
TCCCCGACGGCGGCTCCTTCGCCGGCAACCAGTGCGCCAACCTCTACTGCCACAGCAACGGCCAGGGTAGCTTCACCCCG
CCGACCTGGGGCGCTTCTCTTAGCTGCGCCGGCTGCCACGGCGACGCGACCAGCAACACCCTCTCCGGCAAGCACGCCAA
ACACGTGAACAACGCCGGCTTCCTCGGCACCAACTACGGCTGCGTGGAGTGCCACTCCGCCACCGTGACCGACAACAACA
CTATCGGCAACTTCAACAACCACGTCAACAAGAACAAAGACGTCGCGGGCGCCCACGTAGGGACCCCGGTTGCCGGGACC
TGCTCCACCTCCTACTGCCACACCGACGGCAAGGGAGTCCAGAAGACGGTTACCTGGACCCAGACCCAGGCGCTGGACTG
CAAAAGCTGCCACGGCTCCGACACGGCGCCTGGTGCTGTCGCCTCCATCGCCGGCGAGCCTAACTACAAGAACGACGGTA
TGGACCAGCCGCGCGCCAACAGCCACGCAAACCACGTATTCAGCGCTGCCAGCTGCCAGAACTGCCACGTCAACACCACC
ACCGACGGCCTGACCATCAAGGCCGGCGCTCCGCACACCGACGGCACCCGCAACGTAGCAGCCGGCAACGGCAAGAGCTT
CACCATCGCAGGGAACAGCTGCTCCGCAGTATCCTGCCACGACGGCGGCGGCAAGATCGCAGGCGTCGGCGCTGCCAAAT
GGGGCCAGTCGCTTGGCTGCAACGGCTGCCACGGCGACGCCGCAACCCTTACCACCAACGCCCACGCGGCTCACGTTTCC
ACCAAGGGCTATGCCTGCGACACCTGCCACGCGCAGACCGTCACCGGCAGCACCACCTTTGCCGACAAGACCCTGCACGG
CGACGCCATCGTCGAGGTTGCCGGCGTCAAGGTAACCAGCTTCGCCACCGACACCAAGAACTGCGCCACTTCCTGCCACC
TTTCCGGCACCCCGAAGTGGAACGACAAGAACTCCGGCGCTTGCGGTACCTGCCATAAAGCGCTTTCCACCACCGCGAAC
GGCCTGGTGAGCAGCAACGCCCACTCCGCCCACTTCACCGCAACCTACGGCCCGGGCTTCGACGGCGCCGCTGCCACCTC
CTGCTCCGGCTGCCATACCCCGAACACCGCGGCCAGCCACGCAGACGGCACGCTTAACCTCGCCATCGGCTACAACAAGA
TCGGCACCTGCTCCTCCTGCCACAAGCAGTCGACCAACTGGACCACCGGGCGCGTTTCCTGCGAAAGCTGCCACAGCACC
GCAGGGGGCCAGCTCTCCGTCATCGGCGCCCTCACCGCTCCGGACAAGACCCTGGCAGCGACCGCGGGCCACGGCAAGAC
CGGAATCAACCAGTCCTGCTCCGCTTGCCACGACGCCAACTCCGCACACATCAACGGCATAGCCGGCGACCAGAAGCGTC
TCTTGGGCGCCTTGACCGGCGCGGACAACCAGGAATGTAACTACTGCCACACCGACGCAGGCAAGGTGGCCGGCGCCGCT
CTGAACGTGAAGGTGCACCGTCCCACCGGCGCACTCGGCGCCAAGTGCTCCGACTGCCACAACGCGCACGGTACCGCAAA
CAGCATGATGATTAACGGCACGATCAACGGGACCGCGGTGAGCTTCACCACCGTCAACACCTTCGCCAACGGAGCACGCA
CCGGCGTCTGCCAGGTCTGCCACACCACGACCCAGTACTTCACCAAGGCCGGGCAGCCGGAGGCAACCCACGTGGATTCC
ACCACGAACTGCCTCGAGTGCCACCAGCACAACCCGGCAACCGGCCTCGCCTTCGTTCCCAACGGCGGATGCGACGCCTG
CCATGGCTACCCGCCGGCTCCGAGAAAAACCATCTCCGCAGTCACCTTCGGTGTCCAGGGCAACTGGTCTTCCGCCCGCT
TCGAAGACTACTCCGGCGGCGGCGGCGCCCACGCGGTTGCAGCTCACATCAAGAAAGACGCCAAGCCTTCCGAGGGTTGG
GCAAACTGCCTCCCCTGCCACAACGGCGGCAACGATGCTCACTCAAGGGCGCTGCCGATCAGGAACCACGTGGACAACGT
CACCGTCAAGATCGATCCGCAGTACCGCTTCAGCGACGATCCGTTCCTGGGCTACACTTCCGCCCAGCTGGTCAACGGCG
GGGTCAACAAGTCCGGCAGCTGCTTCAACGTGAGCTGCCACTTCAAGAAGACCAAGCCGTGGAGTATCGAAAGGTAG

Upstream 100 bases:

>100_bases
GGTGGAGCAGCGAAAGATAATCAAGTTTCTGGATCAAATACCGATTCAGCTTGAACAATAAAAAGGGCAACAAAGGAAAG
TATCTAAATTGGAGGGAAAG

Downstream 100 bases:

>100_bases
TAGATAGGCAACAATAGTATTAATTTGCTGTTAATGTTCAGTAAATACGTAGTAAATATGTCTGAATCATAGTACTAACG
TAGTACCTAGGAAACTAGGT

Product: cytochrome c

Products: NA

Alternate protein names: Cytochrome C; High-Molecular-Weight Cytochrome C

Number of amino acids: Translated: 958; Mature: 958

Protein sequence:

>958_residues
MLPKYGGRCLFGLALLVLTLMTLGAGQAQAASQYSYDCTFCHQMPPLDSANAKKDPNTGAIPGNHQGHASAAVNSCAKCH
GDVSGYAMGHRNKTIELADGIGYSRKIAAGFVNQTSVPPTPMGSCSTAACHSNGKGTLKATPAWGAAPFQAPGDCSQCHD
VAPATGNHPTLNSKHASYFGTGTGSCVKCHTDHSAQAKPFSHATSAGRAIEVVLPDGGSFAGNQCANLYCHSNGQGSFTP
PTWGASLSCAGCHGDATSNTLSGKHAKHVNNAGFLGTNYGCVECHSATVTDNNTIGNFNNHVNKNKDVAGAHVGTPVAGT
CSTSYCHTDGKGVQKTVTWTQTQALDCKSCHGSDTAPGAVASIAGEPNYKNDGMDQPRANSHANHVFSAASCQNCHVNTT
TDGLTIKAGAPHTDGTRNVAAGNGKSFTIAGNSCSAVSCHDGGGKIAGVGAAKWGQSLGCNGCHGDAATLTTNAHAAHVS
TKGYACDTCHAQTVTGSTTFADKTLHGDAIVEVAGVKVTSFATDTKNCATSCHLSGTPKWNDKNSGACGTCHKALSTTAN
GLVSSNAHSAHFTATYGPGFDGAAATSCSGCHTPNTAASHADGTLNLAIGYNKIGTCSSCHKQSTNWTTGRVSCESCHST
AGGQLSVIGALTAPDKTLAATAGHGKTGINQSCSACHDANSAHINGIAGDQKRLLGALTGADNQECNYCHTDAGKVAGAA
LNVKVHRPTGALGAKCSDCHNAHGTANSMMINGTINGTAVSFTTVNTFANGARTGVCQVCHTTTQYFTKAGQPEATHVDS
TTNCLECHQHNPATGLAFVPNGGCDACHGYPPAPRKTISAVTFGVQGNWSSARFEDYSGGGGAHAVAAHIKKDAKPSEGW
ANCLPCHNGGNDAHSRALPIRNHVDNVTVKIDPQYRFSDDPFLGYTSAQLVNGGVNKSGSCFNVSCHFKKTKPWSIER

Sequences:

>Translated_958_residues
MLPKYGGRCLFGLALLVLTLMTLGAGQAQAASQYSYDCTFCHQMPPLDSANAKKDPNTGAIPGNHQGHASAAVNSCAKCH
GDVSGYAMGHRNKTIELADGIGYSRKIAAGFVNQTSVPPTPMGSCSTAACHSNGKGTLKATPAWGAAPFQAPGDCSQCHD
VAPATGNHPTLNSKHASYFGTGTGSCVKCHTDHSAQAKPFSHATSAGRAIEVVLPDGGSFAGNQCANLYCHSNGQGSFTP
PTWGASLSCAGCHGDATSNTLSGKHAKHVNNAGFLGTNYGCVECHSATVTDNNTIGNFNNHVNKNKDVAGAHVGTPVAGT
CSTSYCHTDGKGVQKTVTWTQTQALDCKSCHGSDTAPGAVASIAGEPNYKNDGMDQPRANSHANHVFSAASCQNCHVNTT
TDGLTIKAGAPHTDGTRNVAAGNGKSFTIAGNSCSAVSCHDGGGKIAGVGAAKWGQSLGCNGCHGDAATLTTNAHAAHVS
TKGYACDTCHAQTVTGSTTFADKTLHGDAIVEVAGVKVTSFATDTKNCATSCHLSGTPKWNDKNSGACGTCHKALSTTAN
GLVSSNAHSAHFTATYGPGFDGAAATSCSGCHTPNTAASHADGTLNLAIGYNKIGTCSSCHKQSTNWTTGRVSCESCHST
AGGQLSVIGALTAPDKTLAATAGHGKTGINQSCSACHDANSAHINGIAGDQKRLLGALTGADNQECNYCHTDAGKVAGAA
LNVKVHRPTGALGAKCSDCHNAHGTANSMMINGTINGTAVSFTTVNTFANGARTGVCQVCHTTTQYFTKAGQPEATHVDS
TTNCLECHQHNPATGLAFVPNGGCDACHGYPPAPRKTISAVTFGVQGNWSSARFEDYSGGGGAHAVAAHIKKDAKPSEGW
ANCLPCHNGGNDAHSRALPIRNHVDNVTVKIDPQYRFSDDPFLGYTSAQLVNGGVNKSGSCFNVSCHFKKTKPWSIER
>Mature_958_residues
MLPKYGGRCLFGLALLVLTLMTLGAGQAQAASQYSYDCTFCHQMPPLDSANAKKDPNTGAIPGNHQGHASAAVNSCAKCH
GDVSGYAMGHRNKTIELADGIGYSRKIAAGFVNQTSVPPTPMGSCSTAACHSNGKGTLKATPAWGAAPFQAPGDCSQCHD
VAPATGNHPTLNSKHASYFGTGTGSCVKCHTDHSAQAKPFSHATSAGRAIEVVLPDGGSFAGNQCANLYCHSNGQGSFTP
PTWGASLSCAGCHGDATSNTLSGKHAKHVNNAGFLGTNYGCVECHSATVTDNNTIGNFNNHVNKNKDVAGAHVGTPVAGT
CSTSYCHTDGKGVQKTVTWTQTQALDCKSCHGSDTAPGAVASIAGEPNYKNDGMDQPRANSHANHVFSAASCQNCHVNTT
TDGLTIKAGAPHTDGTRNVAAGNGKSFTIAGNSCSAVSCHDGGGKIAGVGAAKWGQSLGCNGCHGDAATLTTNAHAAHVS
TKGYACDTCHAQTVTGSTTFADKTLHGDAIVEVAGVKVTSFATDTKNCATSCHLSGTPKWNDKNSGACGTCHKALSTTAN
GLVSSNAHSAHFTATYGPGFDGAAATSCSGCHTPNTAASHADGTLNLAIGYNKIGTCSSCHKQSTNWTTGRVSCESCHST
AGGQLSVIGALTAPDKTLAATAGHGKTGINQSCSACHDANSAHINGIAGDQKRLLGALTGADNQECNYCHTDAGKVAGAA
LNVKVHRPTGALGAKCSDCHNAHGTANSMMINGTINGTAVSFTTVNTFANGARTGVCQVCHTTTQYFTKAGQPEATHVDS
TTNCLECHQHNPATGLAFVPNGGCDACHGYPPAPRKTISAVTFGVQGNWSSARFEDYSGGGGAHAVAAHIKKDAKPSEGW
ANCLPCHNGGNDAHSRALPIRNHVDNVTVKIDPQYRFSDDPFLGYTSAQLVNGGVNKSGSCFNVSCHFKKTKPWSIER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 97884; Mature: 97884

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
5.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPKYGGRCLFGLALLVLTLMTLGAGQAQAASQYSYDCTFCHQMPPLDSANAKKDPNTGA
CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCC
IPGNHQGHASAAVNSCAKCHGDVSGYAMGHRNKTIELADGIGYSRKIAAGFVNQTSVPPT
CCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCHHHHHHCCCCCCCCCC
PMGSCSTAACHSNGKGTLKATPAWGAAPFQAPGDCSQCHDVAPATGNHPTLNSKHASYFG
CCCCCCCHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEE
TGTGSCVKCHTDHSAQAKPFSHATSAGRAIEVVLPDGGSFAGNQCANLYCHSNGQGSFTP
CCCCCEEEEECCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCC
PTWGASLSCAGCHGDATSNTLSGKHAKHVNNAGFLGTNYGCVECHSATVTDNNTIGNFNN
CCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCEEECCCCCCCCCCC
HVNKNKDVAGAHVGTPVAGTCSTSYCHTDGKGVQKTVTWTQTQALDCKSCHGSDTAPGAV
CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCE
ASIAGEPNYKNDGMDQPRANSHANHVFSAASCQNCHVNTTTDGLTIKAGAPHTDGTRNVA
EEECCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCEEECCCCCEEEECCCCCCCCCCCEE
AGNGKSFTIAGNSCSAVSCHDGGGKIAGVGAAKWGQSLGCNGCHGDAATLTTNAHAAHVS
CCCCCEEEEECCCCCEEEEECCCCEEEECCHHHCCCCCCCCCCCCCCEEEEECCCEEEEE
TKGYACDTCHAQTVTGSTTFADKTLHGDAIVEVAGVKVTSFATDTKNCATSCHLSGTPKW
CCCCEECCCCCEEECCCCEECCCCCCCCEEEEEECEEEEEECCCCCCCCCEEECCCCCCC
NDKNSGACGTCHKALSTTANGLVSSNAHSAHFTATYGPGFDGAAATSCSGCHTPNTAASH
CCCCCCCCHHHHHHHHHHHCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
ADGTLNLAIGYNKIGTCSSCHKQSTNWTTGRVSCESCHSTAGGQLSVIGALTAPDKTLAA
CCCEEEEEECCCCCCCCHHHHCCCCCCCCCEEEHHHHCCCCCCEEEEEEEECCCCCCEEE
TAGHGKTGINQSCSACHDANSAHINGIAGDQKRLLGALTGADNQECNYCHTDAGKVAGAA
ECCCCCCCCCCCHHHHHCCCCCEEECCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCEE
LNVKVHRPTGALGAKCSDCHNAHGTANSMMINGTINGTAVSFTTVNTFANGARTGVCQVC
EEEEEECCCCCCCCCCHHHCCCCCCCCCEEEEEEECCEEEEEEEEHHHCCCCCCCHHHHH
HTTTQYFTKAGQPEATHVDSTTNCLECHQHNPATGLAFVPNGGCDACHGYPPAPRKTISA
HHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEE
VTFGVQGNWSSARFEDYSGGGGAHAVAAHIKKDAKPSEGWANCLPCHNGGNDAHSRALPI
EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCCCCCCCHHHHCCCCC
RNHVDNVTVKIDPQYRFSDDPFLGYTSAQLVNGGVNKSGSCFNVSCHFKKTKPWSIER
CCCCCEEEEEECCCEEECCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MLPKYGGRCLFGLALLVLTLMTLGAGQAQAASQYSYDCTFCHQMPPLDSANAKKDPNTGA
CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCC
IPGNHQGHASAAVNSCAKCHGDVSGYAMGHRNKTIELADGIGYSRKIAAGFVNQTSVPPT
CCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCHHHHHHCCCCCCCCCC
PMGSCSTAACHSNGKGTLKATPAWGAAPFQAPGDCSQCHDVAPATGNHPTLNSKHASYFG
CCCCCCCHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEE
TGTGSCVKCHTDHSAQAKPFSHATSAGRAIEVVLPDGGSFAGNQCANLYCHSNGQGSFTP
CCCCCEEEEECCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCC
PTWGASLSCAGCHGDATSNTLSGKHAKHVNNAGFLGTNYGCVECHSATVTDNNTIGNFNN
CCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCEEECCCCCCCCCCC
HVNKNKDVAGAHVGTPVAGTCSTSYCHTDGKGVQKTVTWTQTQALDCKSCHGSDTAPGAV
CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCE
ASIAGEPNYKNDGMDQPRANSHANHVFSAASCQNCHVNTTTDGLTIKAGAPHTDGTRNVA
EEECCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCEEECCCCCEEEECCCCCCCCCCCEE
AGNGKSFTIAGNSCSAVSCHDGGGKIAGVGAAKWGQSLGCNGCHGDAATLTTNAHAAHVS
CCCCCEEEEECCCCCEEEEECCCCEEEECCHHHCCCCCCCCCCCCCCEEEEECCCEEEEE
TKGYACDTCHAQTVTGSTTFADKTLHGDAIVEVAGVKVTSFATDTKNCATSCHLSGTPKW
CCCCEECCCCCEEECCCCEECCCCCCCCEEEEEECEEEEEECCCCCCCCCEEECCCCCCC
NDKNSGACGTCHKALSTTANGLVSSNAHSAHFTATYGPGFDGAAATSCSGCHTPNTAASH
CCCCCCCCHHHHHHHHHHHCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
ADGTLNLAIGYNKIGTCSSCHKQSTNWTTGRVSCESCHSTAGGQLSVIGALTAPDKTLAA
CCCEEEEEECCCCCCCCHHHHCCCCCCCCCEEEHHHHCCCCCCEEEEEEEECCCCCCEEE
TAGHGKTGINQSCSACHDANSAHINGIAGDQKRLLGALTGADNQECNYCHTDAGKVAGAA
ECCCCCCCCCCCHHHHHCCCCCEEECCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCEE
LNVKVHRPTGALGAKCSDCHNAHGTANSMMINGTINGTAVSFTTVNTFANGARTGVCQVC
EEEEEECCCCCCCCCCHHHCCCCCCCCCEEEEEEECCEEEEEEEEHHHCCCCCCCHHHHH
HTTTQYFTKAGQPEATHVDSTTNCLECHQHNPATGLAFVPNGGCDACHGYPPAPRKTISA
HHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEE
VTFGVQGNWSSARFEDYSGGGGAHAVAAHIKKDAKPSEGWANCLPCHNGGNDAHSRALPI
EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCCCCCCCHHHHCCCCC
RNHVDNVTVKIDPQYRFSDDPFLGYTSAQLVNGGVNKSGSCFNVSCHFKKTKPWSIER
CCCCCEEEEEECCCEEECCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA