| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117469
Identifier: 197117469
GI number: 197117469
Start: 1254245
End: 1255801
Strand: Reverse
Name: 197117469
Synonym: Gbem_1080
Alternate gene names: NA
Gene position: 1255801-1254245 (Counterclockwise)
Preceding gene: 197117475
Following gene: 197117468
Centisome position: 27.21
GC content: 64.03
Gene sequence:
>1557_bases ATGGCGCCCAAATCAAGGAGGCAGCAAAGCTTTATGAAGATAAGACCCTGTAGCAGCATTTTTACCCGCATCGCGCTCGG CGCGCTGCTCGTCATGACCGTCATGGCGTCGGCGCAGTTGGCACCGAGCGCGGCCCAGGCAGCCCAGGCGACTCTGACTT GGTCAGCCCCCACCACCTACACGGACGGCAGCAGCCTGACCAGCCTCAACGGCTACACCGTTCACACCGGGACCGCCCCC GGCAGTTACACGCAGCACTTCACCGTCGGCAACCTGACCTCGTACACGGTGAGCAACCTCAACGACGCGACCAAGTACTA CTTCTCTGTGTCGGCAAACGATGTGGCTGGCAACGCCAGCGCCCCCTCCAACGAAGTCGCCTTCACGACGCCGGCGCCCC CGCCGCCCGCAGCACTTTACACCCTCACGGCCTCTGCCGGCACCGGGGGAACCATCAGCCCCACCGGTTCCATCGTCGTA TCCCAGGGAACCAGCCAGACCTTCAAGATCGCCCCTGCCACTGGGTACCAGATCGCCGCCGTGACGGTTGACGGCGTCTC GGTCGGGGCCGTCGCCAGCTACACCTTCAATAACGTCGCGGCCAACCACAAAATCGCCGCAACTTTCGCTGCGGCACCGG CACCGGCACCGGCACCGACACCAGGCACCACCACTGCAACCTGGCAGAATCAGACGATCGCGCCCCAGACAGGCAGCTTC TCAGCGATCTTCGACCTCACCCCGAGCGTCCTCAACATCAACGCGATCGCCGGCTTCTCAGCGGTACAGGCCGCGGGCTA CACCGACGTCGCCGCGCTGGTCCGCTTCAACCCGACGGGCACCATCGACGTGCGCAACGGGAGCACCTATACGGCCAAAG TCGCGCTCCCTTATTCCGCAGGAAAGAGTTACCGGCTCAGGATGCAGGTCGATGTCCCGAACCACCGCTACGACGTCTAC GTAACCCCGGCCGGCGGGACCGAGACCCAGATCGCAGCAGCCTACGCCTTCAGGACGGAACAGGCGGCGGTGACGGCGCT CAATACCTTCACCCGGAACACCAGCACCGGGACGCTGCAACTGCAGAACCTATCCGTAACCTCCGCCAGCGCCCCGATGA TGAGTTCCGCGCTCTGGCAGAACCGGGCGATCGCTCCCAAGACCGGGACCTTCACCGCGACCTTCGACACCATCCCCAAC GCCGCGAAGATCGACGCCATAACCGGGTTCTCCGCAGTGGCCGCAACCAGCTACTCCGACGTAGCCGCCGTGGTCCGCTT CAACAACAGCGGTACCATCGACGTTCGTAACGGGAGCACCTATGCCGCCAAGGTAGCTCTCCCCTACTCTGCCGGCAAGA GTTACCGCGTGCGGATGGTGATCAACATCCCCTACCACCGCTACGACGTCTACGTCACCCCTGCAGGCGGGACCGAGACT CAGATCGCCGCTGGCTACGCCTTTAGGACCGAGCAGGCAGCCGCCACCGCGCTGAACAACATCAGCCTCTTCGCCGGCAC CGGCAGCCATCAGGTGTTGAACCTGTCACTGCTGTAA
Upstream 100 bases:
>100_bases CTCCTGAAAGCGTTGAAGGCTTTGGGAGCAGAACAAACCAAGAAGGCGTCGGCAAGAAGGCAAAACGCGGAAAGGACGCG TTAACCGGAAGCGGCAGCAG
Downstream 100 bases:
>100_bases CCACTGGTCCCCCGGCTGTGACAGGGGGGGCCGTAGCGCCGCAGGCGCAGCAAGAGCGCGCCTCGCTGAAAGATACCTAA GCAGCACGGCAACCACCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Unsaturated Glucuronyl Hydrolase
Number of amino acids: Translated: 518; Mature: 517
Protein sequence:
>518_residues MAPKSRRQQSFMKIRPCSSIFTRIALGALLVMTVMASAQLAPSAAQAAQATLTWSAPTTYTDGSSLTSLNGYTVHTGTAP GSYTQHFTVGNLTSYTVSNLNDATKYYFSVSANDVAGNASAPSNEVAFTTPAPPPPAALYTLTASAGTGGTISPTGSIVV SQGTSQTFKIAPATGYQIAAVTVDGVSVGAVASYTFNNVAANHKIAATFAAAPAPAPAPTPGTTTATWQNQTIAPQTGSF SAIFDLTPSVLNINAIAGFSAVQAAGYTDVAALVRFNPTGTIDVRNGSTYTAKVALPYSAGKSYRLRMQVDVPNHRYDVY VTPAGGTETQIAAAYAFRTEQAAVTALNTFTRNTSTGTLQLQNLSVTSASAPMMSSALWQNRAIAPKTGTFTATFDTIPN AAKIDAITGFSAVAATSYSDVAAVVRFNNSGTIDVRNGSTYAAKVALPYSAGKSYRVRMVINIPYHRYDVYVTPAGGTET QIAAGYAFRTEQAAATALNNISLFAGTGSHQVLNLSLL
Sequences:
>Translated_518_residues MAPKSRRQQSFMKIRPCSSIFTRIALGALLVMTVMASAQLAPSAAQAAQATLTWSAPTTYTDGSSLTSLNGYTVHTGTAP GSYTQHFTVGNLTSYTVSNLNDATKYYFSVSANDVAGNASAPSNEVAFTTPAPPPPAALYTLTASAGTGGTISPTGSIVV SQGTSQTFKIAPATGYQIAAVTVDGVSVGAVASYTFNNVAANHKIAATFAAAPAPAPAPTPGTTTATWQNQTIAPQTGSF SAIFDLTPSVLNINAIAGFSAVQAAGYTDVAALVRFNPTGTIDVRNGSTYTAKVALPYSAGKSYRLRMQVDVPNHRYDVY VTPAGGTETQIAAAYAFRTEQAAVTALNTFTRNTSTGTLQLQNLSVTSASAPMMSSALWQNRAIAPKTGTFTATFDTIPN AAKIDAITGFSAVAATSYSDVAAVVRFNNSGTIDVRNGSTYAAKVALPYSAGKSYRVRMVINIPYHRYDVYVTPAGGTET QIAAGYAFRTEQAAATALNNISLFAGTGSHQVLNLSLL >Mature_517_residues APKSRRQQSFMKIRPCSSIFTRIALGALLVMTVMASAQLAPSAAQAAQATLTWSAPTTYTDGSSLTSLNGYTVHTGTAPG SYTQHFTVGNLTSYTVSNLNDATKYYFSVSANDVAGNASAPSNEVAFTTPAPPPPAALYTLTASAGTGGTISPTGSIVVS QGTSQTFKIAPATGYQIAAVTVDGVSVGAVASYTFNNVAANHKIAATFAAAPAPAPAPTPGTTTATWQNQTIAPQTGSFS AIFDLTPSVLNINAIAGFSAVQAAGYTDVAALVRFNPTGTIDVRNGSTYTAKVALPYSAGKSYRLRMQVDVPNHRYDVYV TPAGGTETQIAAAYAFRTEQAAVTALNTFTRNTSTGTLQLQNLSVTSASAPMMSSALWQNRAIAPKTGTFTATFDTIPNA AKIDAITGFSAVAATSYSDVAAVVRFNNSGTIDVRNGSTYAAKVALPYSAGKSYRVRMVINIPYHRYDVYVTPAGGTETQ IAAGYAFRTEQAAATALNNISLFAGTGSHQVLNLSLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53674; Mature: 53543
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: PS50853 FN3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPKSRRQQSFMKIRPCSSIFTRIALGALLVMTVMASAQLAPSAAQAAQATLTWSAPTTY CCCHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCEE TDGSSLTSLNGYTVHTGTAPGSYTQHFTVGNLTSYTVSNLNDATKYYFSVSANDVAGNAS CCCCCEEECCCEEEECCCCCCCCEEEEEECCEEEEEECCCCCCEEEEEEEECCCCCCCCC APSNEVAFTTPAPPPPAALYTLTASAGTGGTISPTGSIVVSQGTSQTFKIAPATGYQIAA CCCCCEEEECCCCCCCCEEEEEEECCCCCCEECCCCCEEEECCCCCEEEEECCCCEEEEE VTVDGVSVGAVASYTFNNVAANHKIAATFAAAPAPAPAPTPGTTTATWQNQTIAPQTGSF EEECCCEECEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCEECCCCCCE SAIFDLTPSVLNINAIAGFSAVQAAGYTDVAALVRFNPTGTIDVRNGSTYTAKVALPYSA EEEEECCCCCEEEEEECCCHHHHHCCCCCEEEEEEECCCCEEEECCCCEEEEEEEEEECC GKSYRLRMQVDVPNHRYDVYVTPAGGTETQIAAAYAFRTEQAAVTALNTFTRNTSTGTLQ CCCEEEEEEEECCCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEHHCCCCCCCEEE LQNLSVTSASAPMMSSALWQNRAIAPKTGTFTATFDTIPNAAKIDAITGFSAVAATSYSD EEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECCCHHHEECCCCC VAAVVRFNNSGTIDVRNGSTYAAKVALPYSAGKSYRVRMVINIPYHRYDVYVTPAGGTET EEEEEEECCCCEEEEECCCEEEEEEEEEECCCCCEEEEEEEECCCEEEEEEEECCCCCCC QIAAGYAFRTEQAAATALNNISLFAGTGSHQVLNLSLL EEEECEEEECCHHHHHHHCCEEEEECCCCCEEEEEEEC >Mature Secondary Structure APKSRRQQSFMKIRPCSSIFTRIALGALLVMTVMASAQLAPSAAQAAQATLTWSAPTTY CCHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCEE TDGSSLTSLNGYTVHTGTAPGSYTQHFTVGNLTSYTVSNLNDATKYYFSVSANDVAGNAS CCCCCEEECCCEEEECCCCCCCCEEEEEECCEEEEEECCCCCCEEEEEEEECCCCCCCCC APSNEVAFTTPAPPPPAALYTLTASAGTGGTISPTGSIVVSQGTSQTFKIAPATGYQIAA CCCCCEEEECCCCCCCCEEEEEEECCCCCCEECCCCCEEEECCCCCEEEEECCCCEEEEE VTVDGVSVGAVASYTFNNVAANHKIAATFAAAPAPAPAPTPGTTTATWQNQTIAPQTGSF EEECCCEECEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCEECCCCCCE SAIFDLTPSVLNINAIAGFSAVQAAGYTDVAALVRFNPTGTIDVRNGSTYTAKVALPYSA EEEEECCCCCEEEEEECCCHHHHHCCCCCEEEEEEECCCCEEEECCCCEEEEEEEEEECC GKSYRLRMQVDVPNHRYDVYVTPAGGTETQIAAAYAFRTEQAAVTALNTFTRNTSTGTLQ CCCEEEEEEEECCCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEHHCCCCCCCEEE LQNLSVTSASAPMMSSALWQNRAIAPKTGTFTATFDTIPNAAKIDAITGFSAVAATSYSD EEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECCCHHHEECCCCC VAAVVRFNNSGTIDVRNGSTYAAKVALPYSAGKSYRVRMVINIPYHRYDVYVTPAGGTET EEEEEEECCCCEEEEECCCEEEEEEEEEECCCCCEEEEEEEECCCEEEEEEEECCCCCCC QIAAGYAFRTEQAAATALNNISLFAGTGSHQVLNLSLL EEEECEEEECCHHHHHHHCCEEEEECCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA