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The map label for this gene is ydgJ [H]

Identifier: 197117454

GI number: 197117454

Start: 1237262

End: 1238287

Strand: Direct

Name: ydgJ [H]

Synonym: Gbem_1065

Alternate gene names: 197117454

Gene position: 1237262-1238287 (Clockwise)

Preceding gene: 197117453

Following gene: 197117455

Centisome position: 26.81

GC content: 57.31

Gene sequence:

>1026_bases
ATGATCAACGTCGGTATTGTCGGGTTCGGCTACTGGGGACCCAACGTCGCCAGAAACTTCCACACTACCCCGGGTGCCAG
GGTGGTAGCCGTCAGTGACGCGGACGACCGGTCGCTGGCGCGCGCTGCCCAGAGCTATCCCGGGGTGAGGATGGTGAAGG
ACTTCCGGGAACTGCTGACCGCGCCGGATGTCGACGTGGTCGCCATCGTCACGCCGGTCTCTTCGCATTTCGAGATCGCC
CATATGGCGCTCTCCAATGGGAAGCACATCTTCATCGAGAAACCATTCACGGCGTCCACCTCCCAGGCGGAGCAACTGAT
CGAGCTGGCCGATCGCAAGAAGCTTAAGATCATGGTCGATCACACCTTCCTCTTCACCGGCGCGGTCAAGAAGATAAAGG
AACTGATCGACGACGGGACGTTGGGGGATCTTTACTATTTCGACTCGATCAGGGTCAACCTAGGCTTGTTCCAAAAAGAC
GTGAACGTGGTTTGGGACCTGGCGCCGCACGATCTCTCCATCATGGACCATCTGCTGCGCCTGGAGCCTTCTGCGGTCAT
GGCAACGGGAGTGGCGCACTTCCAAAACCAGCTCGAGGACGTCGCCTACATCACCATTTATTTCCCAGGCAACGTCATCG
CTCACCTGAATGTCAACTGGCTCTCTCCGGTCAAGATAAGGACCACCCTGATCGGAGGACAGAAAAAGATGCTGGTCTGG
AACGACCTAGTAAGCGATGAAAAGATACGTGTCTACGACAAGGGGGTCGAGGGACTGGACTGCCTGGGTACCGACTCCAA
GGAAAAGGCATACGGACTGAGGTTGAGTTACCGTAGCGGGGACATGTGGGCCCCGAGGGTCAACCAGGTCGAGGCGCTTC
AGGGGGAAACGGCCTACTTCATCGATTGCATCAACAACAACATCACCCCGAAAAACGACGGTAGCGCGGGACTAAGGGTG
GTCAGGATACTGGAGGCGATCAAGAAGTCTCTGGCCAAGGGAGGAGCACTAGTCCGCCTGAACTGA

Upstream 100 bases:

>100_bases
GGTGGAGCCTCGCGCTGGACTTCAAGATCCTGCTGAAGACACCGCTGGCCGTTCTCAAGTGCAAGGGCGCCTACTGAGTA
TCGGGCGCTAAGGTGAAATT

Downstream 100 bases:

>100_bases
GAGGGGAAAAGGAGAAAGGAATGAACGAGAATCTTGTTGCTGTTGCCGACGACGTGAAGCTCGGGGCGAACGTAAAACTA
GGGAAATTCATCAACCTGTA

Product: Gfo/Idh/MocA family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MINVGIVGFGYWGPNVARNFHTTPGARVVAVSDADDRSLARAAQSYPGVRMVKDFRELLTAPDVDVVAIVTPVSSHFEIA
HMALSNGKHIFIEKPFTASTSQAEQLIELADRKKLKIMVDHTFLFTGAVKKIKELIDDGTLGDLYYFDSIRVNLGLFQKD
VNVVWDLAPHDLSIMDHLLRLEPSAVMATGVAHFQNQLEDVAYITIYFPGNVIAHLNVNWLSPVKIRTTLIGGQKKMLVW
NDLVSDEKIRVYDKGVEGLDCLGTDSKEKAYGLRLSYRSGDMWAPRVNQVEALQGETAYFIDCINNNITPKNDGSAGLRV
VRILEAIKKSLAKGGALVRLN

Sequences:

>Translated_341_residues
MINVGIVGFGYWGPNVARNFHTTPGARVVAVSDADDRSLARAAQSYPGVRMVKDFRELLTAPDVDVVAIVTPVSSHFEIA
HMALSNGKHIFIEKPFTASTSQAEQLIELADRKKLKIMVDHTFLFTGAVKKIKELIDDGTLGDLYYFDSIRVNLGLFQKD
VNVVWDLAPHDLSIMDHLLRLEPSAVMATGVAHFQNQLEDVAYITIYFPGNVIAHLNVNWLSPVKIRTTLIGGQKKMLVW
NDLVSDEKIRVYDKGVEGLDCLGTDSKEKAYGLRLSYRSGDMWAPRVNQVEALQGETAYFIDCINNNITPKNDGSAGLRV
VRILEAIKKSLAKGGALVRLN
>Mature_341_residues
MINVGIVGFGYWGPNVARNFHTTPGARVVAVSDADDRSLARAAQSYPGVRMVKDFRELLTAPDVDVVAIVTPVSSHFEIA
HMALSNGKHIFIEKPFTASTSQAEQLIELADRKKLKIMVDHTFLFTGAVKKIKELIDDGTLGDLYYFDSIRVNLGLFQKD
VNVVWDLAPHDLSIMDHLLRLEPSAVMATGVAHFQNQLEDVAYITIYFPGNVIAHLNVNWLSPVKIRTTLIGGQKKMLVW
NDLVSDEKIRVYDKGVEGLDCLGTDSKEKAYGLRLSYRSGDMWAPRVNQVEALQGETAYFIDCINNNITPKNDGSAGLRV
VRILEAIKKSLAKGGALVRLN

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=188, Percent_Identity=31.3829787234043, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082405, Length=242, Percent_Identity=27.2727272727273, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789848, Length=113, Percent_Identity=35.3982300884956, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787574, Length=145, Percent_Identity=26.8965517241379, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24581117, Length=265, Percent_Identity=26.7924528301887, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37768; Mature: 37768

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINVGIVGFGYWGPNVARNFHTTPGARVVAVSDADDRSLARAAQSYPGVRMVKDFRELLT
CEEEEEEEEECCCCHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHC
APDVDVVAIVTPVSSHFEIAHMALSNGKHIFIEKPFTASTSQAEQLIELADRKKLKIMVD
CCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEE
HTFLFTGAVKKIKELIDDGTLGDLYYFDSIRVNLGLFQKDVNVVWDLAPHDLSIMDHLLR
EEEEHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCEEEEEECCCCHHHHHHHHH
LEPSAVMATGVAHFQNQLEDVAYITIYFPGNVIAHLNVNWLSPVKIRTTLIGGQKKMLVW
CCCHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCEEEEEE
NDLVSDEKIRVYDKGVEGLDCLGTDSKEKAYGLRLSYRSGDMWAPRVNQVEALQGETAYF
ECCCCCCEEEEEECCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHCCCCEEE
IDCINNNITPKNDGSAGLRVVRILEAIKKSLAKGGALVRLN
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
>Mature Secondary Structure
MINVGIVGFGYWGPNVARNFHTTPGARVVAVSDADDRSLARAAQSYPGVRMVKDFRELLT
CEEEEEEEEECCCCHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHC
APDVDVVAIVTPVSSHFEIAHMALSNGKHIFIEKPFTASTSQAEQLIELADRKKLKIMVD
CCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEE
HTFLFTGAVKKIKELIDDGTLGDLYYFDSIRVNLGLFQKDVNVVWDLAPHDLSIMDHLLR
EEEEHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCEEEEEECCCCHHHHHHHHH
LEPSAVMATGVAHFQNQLEDVAYITIYFPGNVIAHLNVNWLSPVKIRTTLIGGQKKMLVW
CCCHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCEEEEEE
NDLVSDEKIRVYDKGVEGLDCLGTDSKEKAYGLRLSYRSGDMWAPRVNQVEALQGETAYF
ECCCCCCEEEEEECCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHCCCCEEE
IDCINNNITPKNDGSAGLRVVRILEAIKKSLAKGGALVRLN
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]