Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

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The map label for this gene is agaY [C]

Identifier: 197117397

GI number: 197117397

Start: 1165002

End: 1166285

Strand: Direct

Name: agaY [C]

Synonym: Gbem_1007

Alternate gene names: 197117397

Gene position: 1165002-1166285 (Clockwise)

Preceding gene: 197117396

Following gene: 197117398

Centisome position: 25.24

GC content: 61.53

Gene sequence:

>1284_bases
ATGCCCGTAACGTCTTCAGATTTCGTCAAAGCCCTCGAAGTAGGCCGTCCCCCCAACGTCGCGAAGCTTTTCCCCAATTC
CAAGGCTTTGCTGGTCAGCGGCAAGGTGATCGATCGCGCCATGAACGCCAAGGGGCACGCGCTCGCACTGGCAGCCAACG
GCAGGAATCACTTCGTCATCCGCGGCGTACTGGCTGCGGCACAAAGGGCCAACGCCGCCGTCCTCATCGAGATTGCCAAG
TCCGAGGGGGGCCAGAAAGCGTATTGCCCCGTGAACTACTGGAACATGGCCCGCCAGGTCGACGCCGTCGCCAACGAACT
CGGCATCACCATTCCGGTCGCCATCCATGCCGACCACTACGGCATCAAGGGTGAGGGGGACATCAAGTCGGCGAAGGTCG
AGATCCCCAGCATGTTCGACGCCGGCATCACCTCCATCGCCATCGACGCCTCCCACCTCCCCGACGAAGAGAACCTCCTG
GCGAACCTGGAGCTGAACCAGTTCATCCCGGCCTGGGCCGGCCTTGAGACCGAGGTAGGCGAGATCAAGGGTAAAGAGGG
GCTTTCCACCGTGCCCGAAGCGCTTTTCCTGATCAAGGGACTGAACGCCCACGGCGTCTTCCCGGACTGGATCGCCCTCA
ATAACGGCACCACCCACGGGATCGAGGCGTCCGACGCCGGCATCCAGGTGGAACTGACCGCCGAAATCCACGAGGCCATC
AAGCAGTACGGCGTGAACGGCGCCCAGCACGGCACCTCCGGCAACAGCTACGACAGGCTGCGCCAGATCGCCCAGAAGAC
CCGCACCACCAAGGCCAACGTCGCCACGGCGCTGCAGTTCATCTCCTGGGGGCTCGAGGTCAACGACTACGGCAACGCCA
AGCTCGACGCGAACGGCAACTTCATCAAGGTGAAGGGCGAGGGGATGACCGAGGAGCTTTGGACCGAAATGGTCGCCTTC
GCCGATTCCAAGGGGTGGAAGAAGGGGGATTACAAAAACCTCAACCTCCCGTTCGAAAACAAGCTCCTGGCACAGCCCAA
GGAGGCGCGTGACAGGATGGCCAAGCGGGTCGAGGATTTTGCCTACAAGCTCATCACCGAGGTATTCAACTCCGGCGATA
CCGCGCCGCTTGCCGTCGATGCCATTTTGAAAGCCGGCTCTTACGACCTAGGCCCCAAGGGTAAGCGCGTCGAGGATCCG
GCACAGTGGACCAAGGAAATGCTCCCGAAGCAGGCTGCCGGGCTTTCCAGGGATAAAGGACCTGCAGGCAACTTCGAAGA
CTAA

Upstream 100 bases:

>100_bases
GCGCGATTCCCGATCTGTCCTTGCCTTTGCATGATTAAGATGTTATAAGGAAGCGGTTTTTGTGATGAATTGACTACAAT
CCCAGTGAGAAGGAGGAGAT

Downstream 100 bases:

>100_bases
AAAGCCGTAGTTGCAGCGAAGCGGAACACGAGGGGGGCGCCGCGCCCCCCTTTTTTGACTGGGTGTCCGAAAGGGGATCA
CGATGAAAGACAGACGCAAT

Product: ketose-bisphosphate aldolase family protein

Products: Glycerone-Phosphate; D-Glyceraldehyde 3-Phosphate. [C]

Alternate protein names: Ketose-Bisphosphate Aldolase Family Protein; Fructose-Bisphosphate Aldolase; Fructose-Bisphosphate Aldolase Class-II; Fructose/Tagatose Bisphosphate Aldolase-Like Protein; Ketose-Bisphosphate Aldolase Class-II Family Protein

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MPVTSSDFVKALEVGRPPNVAKLFPNSKALLVSGKVIDRAMNAKGHALALAANGRNHFVIRGVLAAAQRANAAVLIEIAK
SEGGQKAYCPVNYWNMARQVDAVANELGITIPVAIHADHYGIKGEGDIKSAKVEIPSMFDAGITSIAIDASHLPDEENLL
ANLELNQFIPAWAGLETEVGEIKGKEGLSTVPEALFLIKGLNAHGVFPDWIALNNGTTHGIEASDAGIQVELTAEIHEAI
KQYGVNGAQHGTSGNSYDRLRQIAQKTRTTKANVATALQFISWGLEVNDYGNAKLDANGNFIKVKGEGMTEELWTEMVAF
ADSKGWKKGDYKNLNLPFENKLLAQPKEARDRMAKRVEDFAYKLITEVFNSGDTAPLAVDAILKAGSYDLGPKGKRVEDP
AQWTKEMLPKQAAGLSRDKGPAGNFED

Sequences:

>Translated_427_residues
MPVTSSDFVKALEVGRPPNVAKLFPNSKALLVSGKVIDRAMNAKGHALALAANGRNHFVIRGVLAAAQRANAAVLIEIAK
SEGGQKAYCPVNYWNMARQVDAVANELGITIPVAIHADHYGIKGEGDIKSAKVEIPSMFDAGITSIAIDASHLPDEENLL
ANLELNQFIPAWAGLETEVGEIKGKEGLSTVPEALFLIKGLNAHGVFPDWIALNNGTTHGIEASDAGIQVELTAEIHEAI
KQYGVNGAQHGTSGNSYDRLRQIAQKTRTTKANVATALQFISWGLEVNDYGNAKLDANGNFIKVKGEGMTEELWTEMVAF
ADSKGWKKGDYKNLNLPFENKLLAQPKEARDRMAKRVEDFAYKLITEVFNSGDTAPLAVDAILKAGSYDLGPKGKRVEDP
AQWTKEMLPKQAAGLSRDKGPAGNFED
>Mature_426_residues
PVTSSDFVKALEVGRPPNVAKLFPNSKALLVSGKVIDRAMNAKGHALALAANGRNHFVIRGVLAAAQRANAAVLIEIAKS
EGGQKAYCPVNYWNMARQVDAVANELGITIPVAIHADHYGIKGEGDIKSAKVEIPSMFDAGITSIAIDASHLPDEENLLA
NLELNQFIPAWAGLETEVGEIKGKEGLSTVPEALFLIKGLNAHGVFPDWIALNNGTTHGIEASDAGIQVELTAEIHEAIK
QYGVNGAQHGTSGNSYDRLRQIAQKTRTTKANVATALQFISWGLEVNDYGNAKLDANGNFIKVKGEGMTEELWTEMVAFA
DSKGWKKGDYKNLNLPFENKLLAQPKEARDRMAKRVEDFAYKLITEVFNSGDTAPLAVDAILKAGSYDLGPKGKRVEDPA
QWTKEMLPKQAAGLSRDKGPAGNFED

Specific function: Catalyzes The Reversible Condensation Of Dihydroxyacetone Phosphate With Glyceraldehyde 3-Phosphate To Produce Tagatose 1,6-Bisphosphate. [C]

COG id: COG0191

COG function: function code G; Fructose/tagatose bisphosphate aldolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 4.1.2.- [C]

Molecular weight: Translated: 46026; Mature: 45894

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVTSSDFVKALEVGRPPNVAKLFPNSKALLVSGKVIDRAMNAKGHALALAANGRNHFVI
CCCCHHHHHHHHHCCCCCCHHEECCCCCEEEEECHHHHHHHCCCCCEEEEEECCCCEEEE
RGVLAAAQRANAAVLIEIAKSEGGQKAYCPVNYWNMARQVDAVANELGITIPVAIHADHY
HHHHHHHHCCCCEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC
GIKGEGDIKSAKVEIPSMFDAGITSIAIDASHLPDEENLLANLELNQFIPAWAGLETEVG
CCCCCCCCCEEEEECCCHHHCCCCEEEEEHHHCCCHHHEEEECCHHHHCCHHCCCCCHHH
EIKGKEGLSTVPEALFLIKGLNAHGVFPDWIALNNGTTHGIEASDAGIQVELTAEIHEAI
HCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEHHHHHHHH
KQYGVNGAQHGTSGNSYDRLRQIAQKTRTTKANVATALQFISWGLEVNDYGNAKLDANGN
HHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCEEEECCCC
FIKVKGEGMTEELWTEMVAFADSKGWKKGDYKNLNLPFENKLLAQPKEARDRMAKRVEDF
EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHH
AYKLITEVFNSGDTAPLAVDAILKAGSYDLGPKGKRVEDPAQWTKEMLPKQAAGLSRDKG
HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
PAGNFED
CCCCCCC
>Mature Secondary Structure 
PVTSSDFVKALEVGRPPNVAKLFPNSKALLVSGKVIDRAMNAKGHALALAANGRNHFVI
CCCHHHHHHHHHCCCCCCHHEECCCCCEEEEECHHHHHHHCCCCCEEEEEECCCCEEEE
RGVLAAAQRANAAVLIEIAKSEGGQKAYCPVNYWNMARQVDAVANELGITIPVAIHADHY
HHHHHHHHCCCCEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC
GIKGEGDIKSAKVEIPSMFDAGITSIAIDASHLPDEENLLANLELNQFIPAWAGLETEVG
CCCCCCCCCEEEEECCCHHHCCCCEEEEEHHHCCCHHHEEEECCHHHHCCHHCCCCCHHH
EIKGKEGLSTVPEALFLIKGLNAHGVFPDWIALNNGTTHGIEASDAGIQVELTAEIHEAI
HCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEHHHHHHHH
KQYGVNGAQHGTSGNSYDRLRQIAQKTRTTKANVATALQFISWGLEVNDYGNAKLDANGN
HHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCEEEECCCC
FIKVKGEGMTEELWTEMVAFADSKGWKKGDYKNLNLPFENKLLAQPKEARDRMAKRVEDF
EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHH
AYKLITEVFNSGDTAPLAVDAILKAGSYDLGPKGKRVEDPAQWTKEMLPKQAAGLSRDKG
HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
PAGNFED
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-Tagatose 1,6-Bisphosphate 1,6-Bisphosphate [C]

Specific reaction: D-Tagatose 1,6-Bisphosphate 1,6-Bisphosphate = Glycerone-Phosphate + D-Glyceraldehyde 3-Phosphate. [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA