| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117371
Identifier: 197117371
GI number: 197117371
Start: 1138598
End: 1139896
Strand: Direct
Name: 197117371
Synonym: Gbem_0981
Alternate gene names: NA
Gene position: 1138598-1139896 (Clockwise)
Preceding gene: 197117370
Following gene: 197117373
Centisome position: 24.67
GC content: 60.89
Gene sequence:
>1299_bases ATGTCAGGCCTTATTGTCGACAGGGTGATGCCGGGAAGCATCGCCGATGAACTTGAGATCGAGCCGGGAGATCGGCTCAT ATCGGTGAACGGGCACCCGCTGCGCGACGTCATTGATTACAACTACTATTCGGCGGACGACCTGCTCGATCTCGAACTCG AAAAGGGGGACGGCGAGCTTTGGGAACTGGAGGTGGAGCGGGAGGAAGGTGAACCGCTGGGCCTCTCCTTCGAGGCTCCT CTTCCGGCGCGCTGTGGCAACAACTGCGTCTTCTGCTTCGTACACCAGCTCCCCAAGGGGCTGCGCGGCCCGCTCTACGT CAAGGACGAGGATTACCGGCTCTCCTTTCTCTACGGAAATTACGTGACGCTGGCCAACATCGGCCGTGCCGAGCTGGACC GGATCAAGGAGCAGCGCCTGTCGCCGCTCTACATCTCGGTTCACGCCACCGAGCCTAAATTAAGGGAGGAGTTGCTGGGC AAAAGCGGCATCCTCCCCATACTCGACGTCATGAAGGAACTGGCCGAGGCGCGGATAACCATGCATACCCAGGTGGTGCT CTGCCCAGGATGGAACGATGGGGAGGCATTTGCCCGTACCGTCGAGGATCTGGCGTCGATGTATCCGGCGGTAGCCTCGC TGGCGGTGGTTCCGGTGGGGCTCACCGAGCACCGGAAGCATCTTCCGCCGCTTGCCCCGTTGACCAGAGAGTTCGCAGCC TCCTTCATCGAGGAATGGAGCGGCAAGGCGCGGCTTCTTGAAGAGAGGCTCGGAGAGCCATTTCTGTTTCTCGCCGACGA GTTTTATATCAAGGGGGAGATTCCCTTCCCATCCTTGGAGAGCTACGGCGATCTGCCACAGTTGGAAAACGGCGTAGGAA TGATCCCTCTCTTTCTGTCGGAGGCAGAGCAGGTGCTGGAGGACGCCGAACCGGTGCCGGGCGCGCGTGTCACGGTGGTC AGCGGCGAGTCGCCCTACAACTACCTGGCGGGATTTCTGGCGCAGCTCTCGACAGCGACCGGCGCCTCCGTCGTTGCGGT GGCGGTGAAAAACAGGCTGTTCGGCCCGTCGGTCACTGTGACCGGACTCGTCTGCGGCAGGGACATCATTTCCGCGCTTA AGGGCGTAGAACTGGGAGATCTGGTGCTGGTCCCCGACGTCATGCTTAAGGAGGGGGAGGGGGTATTTCTCGACGACCTG ACGGTGGACGACCTGGAGCGGGAGTTGGGGAAGACGGTTCAGGTGGTGGAATCGACCCCCTATGGCATCTATGACGCTTT AGCTGACATGCGGGAGTAG
Upstream 100 bases:
>100_bases TCTGGAAGAGTGCCCGACGCCACAGCGCTGTCGCAATCGGATTCTTACGCAGCCGGTATAGCAGGGCGCTTGCCAAAGGG ACGCGAAGAGGAGGAAGTGG
Downstream 100 bases:
>100_bases CGAAGAAGGTTTGCGGCAGGATTGAAGCGGGAAGCCGGCGGGGGGATTGAACCCTCCGCCGGCTTTTTTTGTTAACGGCT CATGGCGTCGATGGCGTCGA
Product: iron-sulfur cluster-binding oxidoreductase
Products: NA
Alternate protein names: FeS-Containing Oxidoreductase; FeS-Containing Cyanobacterial-Specific Oxidoreductase; PDZ Domain Protein; FeS-Containing Organism-Specific Oxidoreductase; FeS-Containing-Specific Oxidoreductase; Response Regulator Receiver Protein; PDZ Domain-Containing Protein
Number of amino acids: Translated: 432; Mature: 431
Protein sequence:
>432_residues MSGLIVDRVMPGSIADELEIEPGDRLISVNGHPLRDVIDYNYYSADDLLDLELEKGDGELWELEVEREEGEPLGLSFEAP LPARCGNNCVFCFVHQLPKGLRGPLYVKDEDYRLSFLYGNYVTLANIGRAELDRIKEQRLSPLYISVHATEPKLREELLG KSGILPILDVMKELAEARITMHTQVVLCPGWNDGEAFARTVEDLASMYPAVASLAVVPVGLTEHRKHLPPLAPLTREFAA SFIEEWSGKARLLEERLGEPFLFLADEFYIKGEIPFPSLESYGDLPQLENGVGMIPLFLSEAEQVLEDAEPVPGARVTVV SGESPYNYLAGFLAQLSTATGASVVAVAVKNRLFGPSVTVTGLVCGRDIISALKGVELGDLVLVPDVMLKEGEGVFLDDL TVDDLERELGKTVQVVESTPYGIYDALADMRE
Sequences:
>Translated_432_residues MSGLIVDRVMPGSIADELEIEPGDRLISVNGHPLRDVIDYNYYSADDLLDLELEKGDGELWELEVEREEGEPLGLSFEAP LPARCGNNCVFCFVHQLPKGLRGPLYVKDEDYRLSFLYGNYVTLANIGRAELDRIKEQRLSPLYISVHATEPKLREELLG KSGILPILDVMKELAEARITMHTQVVLCPGWNDGEAFARTVEDLASMYPAVASLAVVPVGLTEHRKHLPPLAPLTREFAA SFIEEWSGKARLLEERLGEPFLFLADEFYIKGEIPFPSLESYGDLPQLENGVGMIPLFLSEAEQVLEDAEPVPGARVTVV SGESPYNYLAGFLAQLSTATGASVVAVAVKNRLFGPSVTVTGLVCGRDIISALKGVELGDLVLVPDVMLKEGEGVFLDDL TVDDLERELGKTVQVVESTPYGIYDALADMRE >Mature_431_residues SGLIVDRVMPGSIADELEIEPGDRLISVNGHPLRDVIDYNYYSADDLLDLELEKGDGELWELEVEREEGEPLGLSFEAPL PARCGNNCVFCFVHQLPKGLRGPLYVKDEDYRLSFLYGNYVTLANIGRAELDRIKEQRLSPLYISVHATEPKLREELLGK SGILPILDVMKELAEARITMHTQVVLCPGWNDGEAFARTVEDLASMYPAVASLAVVPVGLTEHRKHLPPLAPLTREFAAS FIEEWSGKARLLEERLGEPFLFLADEFYIKGEIPFPSLESYGDLPQLENGVGMIPLFLSEAEQVLEDAEPVPGARVTVVS GESPYNYLAGFLAQLSTATGASVVAVAVKNRLFGPSVTVTGLVCGRDIISALKGVELGDLVLVPDVMLKEGEGVFLDDLT VDDLERELGKTVQVVESTPYGIYDALADMRE
Specific function: Unknown
COG id: COG1625
COG function: function code C; Fe-S oxidoreductase, related to NifB/MoaA family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47465; Mature: 47334
Theoretical pI: Translated: 4.16; Mature: 4.16
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLIVDRVMPGSIADELEIEPGDRLISVNGHPLRDVIDYNYYSADDLLDLELEKGDGEL CCCEEECCCCCCCCCCCEEECCCCEEEEECCCCHHHHHCCCCCCCCCEEEEEEECCCCCE WELEVEREEGEPLGLSFEAPLPARCGNNCVFCFVHQLPKGLRGPLYVKDEDYRLSFLYGN EEEEEECCCCCCCCEEECCCCCCCCCCCEEEEEEHHCCCCCCCCEEEECCCEEEEEEECC YVTLANIGRAELDRIKEQRLSPLYISVHATEPKLREELLGKSGILPILDVMKELAEARIT EEEEECCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHEE MHTQVVLCPGWNDGEAFARTVEDLASMYPAVASLAVVPVGLTEHRKHLPPLAPLTREFAA EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHCCCCCCHHHHHHHH SFIEEWSGKARLLEERLGEPFLFLADEFYIKGEIPFPSLESYGDLPQLENGVGMIPLFLS HHHHHHCCHHHHHHHHCCCCEEEEECEEEEECCCCCCCCHHCCCCCCCCCCCCEEHHHHH EAEQVLEDAEPVPGARVTVVSGESPYNYLAGFLAQLSTATGASVVAVAVKNRLFGPSVTV HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCEE TGLVCGRDIISALKGVELGDLVLVPDVMLKEGEGVFLDDLTVDDLERELGKTVQVVESTP EEEHHHHHHHHHHCCCCCCCEEEECHHHHCCCCCEEEECCCHHHHHHHHCCCEEEECCCC YGIYDALADMRE CHHHHHHHHHCC >Mature Secondary Structure SGLIVDRVMPGSIADELEIEPGDRLISVNGHPLRDVIDYNYYSADDLLDLELEKGDGEL CCEEECCCCCCCCCCCEEECCCCEEEEECCCCHHHHHCCCCCCCCCEEEEEEECCCCCE WELEVEREEGEPLGLSFEAPLPARCGNNCVFCFVHQLPKGLRGPLYVKDEDYRLSFLYGN EEEEEECCCCCCCCEEECCCCCCCCCCCEEEEEEHHCCCCCCCCEEEECCCEEEEEEECC YVTLANIGRAELDRIKEQRLSPLYISVHATEPKLREELLGKSGILPILDVMKELAEARIT EEEEECCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHEE MHTQVVLCPGWNDGEAFARTVEDLASMYPAVASLAVVPVGLTEHRKHLPPLAPLTREFAA EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHCCCCCCHHHHHHHH SFIEEWSGKARLLEERLGEPFLFLADEFYIKGEIPFPSLESYGDLPQLENGVGMIPLFLS HHHHHHCCHHHHHHHHCCCCEEEEECEEEEECCCCCCCCHHCCCCCCCCCCCCEEHHHHH EAEQVLEDAEPVPGARVTVVSGESPYNYLAGFLAQLSTATGASVVAVAVKNRLFGPSVTV HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCEE TGLVCGRDIISALKGVELGDLVLVPDVMLKEGEGVFLDDLTVDDLERELGKTVQVVESTP EEEHHHHHHHHHHCCCCCCCEEEECHHHHCCCCCEEEECCCHHHHHHHHCCCEEEECCCC YGIYDALADMRE CHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA