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The map label for this gene is ymdA

Identifier: 197117358

GI number: 197117358

Start: 1119508

End: 1121109

Strand: Direct

Name: ymdA

Synonym: Gbem_0968

Alternate gene names: NA

Gene position: 1119508-1121109 (Clockwise)

Preceding gene: 197117357

Following gene: 197117359

Centisome position: 24.26

GC content: 60.36

Gene sequence:

>1602_bases
GTGAGTATTGACATTACGATAACCATAATCCTCGTGCTCGTGGCGGCCGGTATCGGTTACGCGATAGGGAACGTGCTGCG
CAAAAAACTCTCCAACTCCCTGGTGACCGACGCCGAGACGCTGGCCGCCAAGATGATCGAGGACGCCAAGCGGCAGACTG
AAGTTATGGCCATGGAGGCCGCCGTTCAGGCAAAAGACGCGGTGTACCAGGCAAAAGAAGAGCTGGAGAAACAGTTCGAA
CAGGAAACACGCGAAAAACGCCGGGATCTTCAGGCTCTGGAGAAGAGGCTGCAGCAAAAAGAAGAAAATCTCGACAAGAA
GACCAACCTTTTTGACCAGCGTGACGCGGATTTCCTGAAACGGGAGCAGGCGCTGGCCGTTCGCGAGCAGTCCCTGGTTA
CCAAAGAGCAGACGCTCGGGCAGAAGGAGGAAAAGCTCGACGCACTGGTCGGCGAGCAGAAGGCGAAGCTGGAGCAGATC
GCCGGCATGACCTCCGCCGAAGCGAAGAAGTTCCTCATGGACTCAATGGAGGACGAGGCAAAACTCGACGTCGCCAAGCT
GATCAAGGCGATGGAAGAAGAAGCAAGAGAGACCGCGGATAAGAAGGCGAAGGAGATTCTGGCCCTCGCCATGCAGCGCT
ACGCTGGCGAGTACGTCGCCGAGCGGAGCGTCTCCGTCGTGACCCTTCCCTCCGACGAGATGAAGGGGCGCATCATCGGC
CGCGAAGGACGCAACATCAGAGCCCTTGAGGCTGCCACCGGCATCGACCTTATCATCGACGATACCCCTGAAGCGGTCAT
CCTTTCCGGGTTCAATCCGGTAAGAAGGGAAGTCGCCAAGCTGTCGCTGCAGAAACTGATCGCCGACGGCAGGATCCATC
CGGGGCGCATCGAAGAGGTCGTTGCCAAGTCTCAGGAGGAAATAGAGCAGGCGATGAAGGAAGCCGGCGAGCAGGCTGCC
TTCGACCTGGGCGTGCACGGCATTCACCCCGAGATCCTCAAGCTGATCGGCAGGCTCAAATACCGCACCTCCTACAGCCA
GAACGTCTACCAGCACTCGCTGGAAGTAGCCTTCCTCTGCGGCATCATGGCCGCCGAACTCGGCATCAACGTGAAGCAGG
CCAAGAGGGCCGGCCTTCTGCACGACCTCGGCAAGGCCGTCGACCACGAGATCGAAGGCTCCCACGCCGTCATCGGCGCC
GACATCGCCAAAAAGTACGGCGAGTCCCCGAAGATCGTGCACGCCATCATGGCGCACCACGAGGACGAGAAGCCGGCGAC
GGTGCTCGCCGTCCTGGTGCAGGCAGCGGACGCGCTCTCCGGAGCCCGCCCCGGCGCCCGCCGCGAAATGATGGAGACCT
ACGTGAAGCGTCTGGACGACCTGGAGAGGATCGCCACCTCGTTCGACGGCGTCCTGACCTCCTTCGCCATCCAGGCAGGC
CGCGAGATCCGCGTCATGGTTTCCAGCGAGCAGGTGACCGACGACCGTGCGCTGGTCTTGGCCAAGGACATCGCCAAGAA
AATCGAGACCGAGATGACCTACCCGGGACAGATCAAGGTGAACGTGATCAGGGAAACCAGGGCCACCGAATATGCCCGTT
AA

Upstream 100 bases:

>100_bases
AAGAGATAGCCGGCGAACCGCACGATGTGACGATGGACTTGATCGTCACCGAGCTTCGGGTGGTTCGCGTTAATAAAAAT
ATATGTGAGGGGGAATAACA

Downstream 100 bases:

>100_bases
GCTTCTCTTTATCGGTGACGTCATCGGGAAGCCGGGGCGCGAGGCCCTCTCCCGTGAGTTGCACCGGATCGTAGACCGCC
ACATGGTCGACCTGGTCATT

Product: phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 532

Protein sequence:

>533_residues
MSIDITITIILVLVAAGIGYAIGNVLRKKLSNSLVTDAETLAAKMIEDAKRQTEVMAMEAAVQAKDAVYQAKEELEKQFE
QETREKRRDLQALEKRLQQKEENLDKKTNLFDQRDADFLKREQALAVREQSLVTKEQTLGQKEEKLDALVGEQKAKLEQI
AGMTSAEAKKFLMDSMEDEAKLDVAKLIKAMEEEARETADKKAKEILALAMQRYAGEYVAERSVSVVTLPSDEMKGRIIG
REGRNIRALEAATGIDLIIDDTPEAVILSGFNPVRREVAKLSLQKLIADGRIHPGRIEEVVAKSQEEIEQAMKEAGEQAA
FDLGVHGIHPEILKLIGRLKYRTSYSQNVYQHSLEVAFLCGIMAAELGINVKQAKRAGLLHDLGKAVDHEIEGSHAVIGA
DIAKKYGESPKIVHAIMAHHEDEKPATVLAVLVQAADALSGARPGARREMMETYVKRLDDLERIATSFDGVLTSFAIQAG
REIRVMVSSEQVTDDRALVLAKDIAKKIETEMTYPGQIKVNVIRETRATEYAR

Sequences:

>Translated_533_residues
MSIDITITIILVLVAAGIGYAIGNVLRKKLSNSLVTDAETLAAKMIEDAKRQTEVMAMEAAVQAKDAVYQAKEELEKQFE
QETREKRRDLQALEKRLQQKEENLDKKTNLFDQRDADFLKREQALAVREQSLVTKEQTLGQKEEKLDALVGEQKAKLEQI
AGMTSAEAKKFLMDSMEDEAKLDVAKLIKAMEEEARETADKKAKEILALAMQRYAGEYVAERSVSVVTLPSDEMKGRIIG
REGRNIRALEAATGIDLIIDDTPEAVILSGFNPVRREVAKLSLQKLIADGRIHPGRIEEVVAKSQEEIEQAMKEAGEQAA
FDLGVHGIHPEILKLIGRLKYRTSYSQNVYQHSLEVAFLCGIMAAELGINVKQAKRAGLLHDLGKAVDHEIEGSHAVIGA
DIAKKYGESPKIVHAIMAHHEDEKPATVLAVLVQAADALSGARPGARREMMETYVKRLDDLERIATSFDGVLTSFAIQAG
REIRVMVSSEQVTDDRALVLAKDIAKKIETEMTYPGQIKVNVIRETRATEYAR
>Mature_532_residues
SIDITITIILVLVAAGIGYAIGNVLRKKLSNSLVTDAETLAAKMIEDAKRQTEVMAMEAAVQAKDAVYQAKEELEKQFEQ
ETREKRRDLQALEKRLQQKEENLDKKTNLFDQRDADFLKREQALAVREQSLVTKEQTLGQKEEKLDALVGEQKAKLEQIA
GMTSAEAKKFLMDSMEDEAKLDVAKLIKAMEEEARETADKKAKEILALAMQRYAGEYVAERSVSVVTLPSDEMKGRIIGR
EGRNIRALEAATGIDLIIDDTPEAVILSGFNPVRREVAKLSLQKLIADGRIHPGRIEEVVAKSQEEIEQAMKEAGEQAAF
DLGVHGIHPEILKLIGRLKYRTSYSQNVYQHSLEVAFLCGIMAAELGINVKQAKRAGLLHDLGKAVDHEIEGSHAVIGAD
IAKKYGESPKIVHAIMAHHEDEKPATVLAVLVQAADALSGARPGARREMMETYVKRLDDLERIATSFDGVLTSFAIQAGR
EIRVMVSSEQVTDDRALVLAKDIAKKIETEMTYPGQIKVNVIRETRATEYAR

Specific function: Catalyzes the hydrolysis of both 2',3'-cyclic AMP and 2',3'-cyclic GMP into 3'-AMP and 3'-GMP, respectively, at the 3'- terminal of RNA [H]

COG id: COG1418

COG function: function code R; Predicted HD superfamily hydrolase

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017705
- InterPro:   IPR022711
- InterPro:   IPR004087
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR003607
- InterPro:   IPR006675 [H]

Pfam domain/function: PF12072 DUF3552; PF00013 KH_1 [H]

EC number: =3.1.4.16 [H]

Molecular weight: Translated: 59151; Mature: 59020

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDITITIILVLVAAGIGYAIGNVLRKKLSNSLVTDAETLAAKMIEDAKRQTEVMAMEA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVQAKDAVYQAKEELEKQFEQETREKRRDLQALEKRLQQKEENLDKKTNLFDQRDADFLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHH
REQALAVREQSLVTKEQTLGQKEEKLDALVGEQKAKLEQIAGMTSAEAKKFLMDSMEDEA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
KLDVAKLIKAMEEEARETADKKAKEILALAMQRYAGEYVAERSVSVVTLPSDEMKGRIIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHCCCEEC
REGRNIRALEAATGIDLIIDDTPEAVILSGFNPVRREVAKLSLQKLIADGRIHPGRIEEV
CCCCCEEEEHHHCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VAKSQEEIEQAMKEAGEQAAFDLGVHGIHPEILKLIGRLKYRTSYSQNVYQHSLEVAFLC
HHCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
GIMAAELGINVKQAKRAGLLHDLGKAVDHEIEGSHAVIGADIAKKYGESPKIVHAIMAHH
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHCCCHHHHHHHHHHC
EDEKPATVLAVLVQAADALSGARPGARREMMETYVKRLDDLERIATSFDGVLTSFAIQAG
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
REIRVMVSSEQVTDDRALVLAKDIAKKIETEMTYPGQIKVNVIRETRATEYAR
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCCCCC
>Mature Secondary Structure 
SIDITITIILVLVAAGIGYAIGNVLRKKLSNSLVTDAETLAAKMIEDAKRQTEVMAMEA
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVQAKDAVYQAKEELEKQFEQETREKRRDLQALEKRLQQKEENLDKKTNLFDQRDADFLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHH
REQALAVREQSLVTKEQTLGQKEEKLDALVGEQKAKLEQIAGMTSAEAKKFLMDSMEDEA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
KLDVAKLIKAMEEEARETADKKAKEILALAMQRYAGEYVAERSVSVVTLPSDEMKGRIIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHCCCEEC
REGRNIRALEAATGIDLIIDDTPEAVILSGFNPVRREVAKLSLQKLIADGRIHPGRIEEV
CCCCCEEEEHHHCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VAKSQEEIEQAMKEAGEQAAFDLGVHGIHPEILKLIGRLKYRTSYSQNVYQHSLEVAFLC
HHCCHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
GIMAAELGINVKQAKRAGLLHDLGKAVDHEIEGSHAVIGADIAKKYGESPKIVHAIMAHH
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHCCCHHHHHHHHHHC
EDEKPATVLAVLVQAADALSGARPGARREMMETYVKRLDDLERIATSFDGVLTSFAIQAG
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
REIRVMVSSEQVTDDRALVLAKDIAKKIETEMTYPGQIKVNVIRETRATEYAR
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA