| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is mrcA [H]
Identifier: 197116589
GI number: 197116589
Start: 221150
End: 223633
Strand: Reverse
Name: mrcA [H]
Synonym: Gbem_0189
Alternate gene names: 197116589
Gene position: 223633-221150 (Counterclockwise)
Preceding gene: 197116594
Following gene: 197116588
Centisome position: 4.85
GC content: 64.41
Gene sequence:
>2484_bases ATGGAAACCTATAAGGCGCAGCCCCGGCAGCAAAACCGCAGACTGAAGCAGCGGACGGGAGGCAAAGTCCTCCTCGCCGC CTTCGCGACCGTTTCAACCATCCTGTTTCTCGCCTTCATCGGCTATTTCTTCTACCTTCTGGGAGCACTCCCAAAGGTGG ACCGCCTGGCGGACTACCGCCCGCCCATCCTTTCCCAGGTCTACGGCGCCGACGGCGCCCTGGTGGGGGAATTCTACCTG GAGCGGCGCACGGTGGTCCCGGTAGACAAGATGCCCAAACGGCTGATCCAGGCCTTCGTCTCCGCCGAGGACTCGAACTT CTACCAGCACAAGGGTATCGACTACGTCGGCATCGCCAGGGCCGCTTTCAAGAACCTGATATCCATGCGCAAGAAGGAGG GGGCCTCCACCATCACGCAGCAGGTCGCCAAGTCGATGCTGCTCACCCCGGAAAAGAAGTTCTCCCGCAAGCTCAAGGAG GCGATCCTCGCTAAAAGGATGGAGGAGCGGCTCTCCAAGGACGAGATCCTCTACATCTACCTGAACCAGATCTACCTCGG GGCGGGGGCCTACGGCGTGCAGCTTGCGGCCGAGACCTACTTCGGCAAGGAAGTCGAGAACCTGAACCTCGCGGAGATGG CGATGCTGGCCGGGCTCCCCAAGGCCCCCAACAGCTACTCCCCCATCAAGCACCTGGACCGGGCCAAGGAGCGCCAGGCG TACGTGCTGGAGCGGATGGTGAAGGAGGGGTACATCACTCAGGCCGAGGCGCAGTACGCCAAGGCGACCCCTATCGTGAT CCAGCCGCTCAAGAAGGTGAACGCGGAGCAGTCGGCCTACTTCCTTGAGCAGGTGCGGCAGCAGCTGGTGCAAAAGTACG GCGAGGAGCGGCTCTACAAGGACGGCCTCAAGATCTACACCACCATGAACGGAGAGATGCAGAAGGCGGCCTACACCTCG GTCGTGAACGGCCTGAAGGCGGTGGACAAGCGCCAGGGGTTCCGGGGGGCCGCGAAGTACCTCCAGGAAGCAGAGGTGGA GCCTTTCTGCAAGAAGGTCGAGGACGAGATCGACGACCTCTCCCTGAAGGAGGGGAACGTCTATCAGGGGGTGGTGACCG GCGTCGACCCGGCGAAACGCGAGCTCACCGTGCAGGTGGGGGAGCGTACCGGGACCGTCCCCAGGAAGAACATGGAATGG GCCGGGAAGCTGGAGCTGATCCCCAGGTTCGGAAAACCTGAGGCGAAGCGCGCCATCGGGCTTGGCGCCGTTTTGGAGCT GCAGGTGAAGGTGCCGGATCAGAACAGGACCGGGGCGGTGTTCGCGCTGGACCAGGCCCCTGAGGCACAGGCGGCGCTGA TAGCCCTTGACCCGTTGACCGGGGGGGTGCGCGCCATGGTCGGGGGGTACGACTTCAAAAAGAGCCAGTTCAACCGCGCC ATGCAGGCCAAGCGGAATCCGGGCTCCGCGTTCAAGCCAGTCATCTACGCCGCCGCTTTGGACAACGGCATGACAACCGC AAGCGTCATCGACGACTCCCAGGTTGAATACGAAAGCGGTGCGGAGAAGGCCTGGAAACCCAAGAACTACGACAACGTCT ACCGCGGACCGGTCACCATGCGCGAGGCGCTTACCGAGTCGATCAACGTGGTGAGCGTGAAGATCCTGGAACAGATCGGG GTGGGAACCGCCATCGAGTACGCCAAGAAGATCGGGATCACCTCCCCCTTGGCCAGCAACCTGACCCTCGCCCTCGGTTC CTCTTCGGTGACCCCTATCGAGCTCACCAGCGCCTATGCCGTGTTCGCTTCCGGCGGTTACCGGACCACCCCCTACTTCG TCACCAAGGTGCTCGACCGCGATGGGAACGTGCTCGAGGAGACGGCGGAGCCGAAGATCCCCGTTTTCAGCCGCATGTCG TCTGCCGGCGAAGGGGACGAGAACACGGCGCCAGGCGAGAATGGGGAAGGAGCGGCACCGAAGCCGGCCGAAGCCGGCTT GAACTCGGCCGCAGGGGGGGCCTTCCCGGTGATCCCGCCTGAGACCGCCTTCATCATGACCAACCTGATGCAGAGCGTCG TCACCAGCGGCACCGGCGGCAGGGCACGCGCCGTGGGGAGGCCGGTCGCCGGCAAGACCGGGACCACCAACGACATGAAG GATGCCTGGTTCGTGGGATACGTGCCGCAACTGGTGGCCGGGGTGTGGGTAGGATACGACCAGGAGCGGAGTCTGGGAGC CGGAGGATCTGGGGGCCAGGCGGCAGCGCCGATCTGGACCGACTTCATGCAACGCGCCCTCGCCGGCCTTCCGGTGAAGT CGTTCCCCACCCCGGGGAACGTCACCTTCGCCCTCATCGACCCCCGCACGGGGCACCTGGCGCGCGAAGGGACCCCCGGC GCGGTGCAGGAATGTTTCATCGCCGGGACGGAACCGACCAGCTACGGCGCCGAGCCGCAGGCGGATGCAGGTGGCGCGCC GTAA
Upstream 100 bases:
>100_bases GGGGGTAAACGCTCTCGCCGCCCCCGCCGTACCGAACCTTCCAAGGCACCACGCCCCGCCTCTGCCGGGCGCATCCGACC ACTGGAGAAACACAGAACCT
Downstream 100 bases:
>100_bases CATATTGTTTTTACTGCGCTTGAGCAGGCAGGGCTCGGAAGGAAAAGGAGACGGCGGCAGCGCCGCGAAGGGCTGCCAGG CGCGGTTTTACGGCTACCGC
Product: peptidoglycan synthetase
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues METYKAQPRQQNRRLKQRTGGKVLLAAFATVSTILFLAFIGYFFYLLGALPKVDRLADYRPPILSQVYGADGALVGEFYL ERRTVVPVDKMPKRLIQAFVSAEDSNFYQHKGIDYVGIARAAFKNLISMRKKEGASTITQQVAKSMLLTPEKKFSRKLKE AILAKRMEERLSKDEILYIYLNQIYLGAGAYGVQLAAETYFGKEVENLNLAEMAMLAGLPKAPNSYSPIKHLDRAKERQA YVLERMVKEGYITQAEAQYAKATPIVIQPLKKVNAEQSAYFLEQVRQQLVQKYGEERLYKDGLKIYTTMNGEMQKAAYTS VVNGLKAVDKRQGFRGAAKYLQEAEVEPFCKKVEDEIDDLSLKEGNVYQGVVTGVDPAKRELTVQVGERTGTVPRKNMEW AGKLELIPRFGKPEAKRAIGLGAVLELQVKVPDQNRTGAVFALDQAPEAQAALIALDPLTGGVRAMVGGYDFKKSQFNRA MQAKRNPGSAFKPVIYAAALDNGMTTASVIDDSQVEYESGAEKAWKPKNYDNVYRGPVTMREALTESINVVSVKILEQIG VGTAIEYAKKIGITSPLASNLTLALGSSSVTPIELTSAYAVFASGGYRTTPYFVTKVLDRDGNVLEETAEPKIPVFSRMS SAGEGDENTAPGENGEGAAPKPAEAGLNSAAGGAFPVIPPETAFIMTNLMQSVVTSGTGGRARAVGRPVAGKTGTTNDMK DAWFVGYVPQLVAGVWVGYDQERSLGAGGSGGQAAAPIWTDFMQRALAGLPVKSFPTPGNVTFALIDPRTGHLAREGTPG AVQECFIAGTEPTSYGAEPQADAGGAP
Sequences:
>Translated_827_residues METYKAQPRQQNRRLKQRTGGKVLLAAFATVSTILFLAFIGYFFYLLGALPKVDRLADYRPPILSQVYGADGALVGEFYL ERRTVVPVDKMPKRLIQAFVSAEDSNFYQHKGIDYVGIARAAFKNLISMRKKEGASTITQQVAKSMLLTPEKKFSRKLKE AILAKRMEERLSKDEILYIYLNQIYLGAGAYGVQLAAETYFGKEVENLNLAEMAMLAGLPKAPNSYSPIKHLDRAKERQA YVLERMVKEGYITQAEAQYAKATPIVIQPLKKVNAEQSAYFLEQVRQQLVQKYGEERLYKDGLKIYTTMNGEMQKAAYTS VVNGLKAVDKRQGFRGAAKYLQEAEVEPFCKKVEDEIDDLSLKEGNVYQGVVTGVDPAKRELTVQVGERTGTVPRKNMEW AGKLELIPRFGKPEAKRAIGLGAVLELQVKVPDQNRTGAVFALDQAPEAQAALIALDPLTGGVRAMVGGYDFKKSQFNRA MQAKRNPGSAFKPVIYAAALDNGMTTASVIDDSQVEYESGAEKAWKPKNYDNVYRGPVTMREALTESINVVSVKILEQIG VGTAIEYAKKIGITSPLASNLTLALGSSSVTPIELTSAYAVFASGGYRTTPYFVTKVLDRDGNVLEETAEPKIPVFSRMS SAGEGDENTAPGENGEGAAPKPAEAGLNSAAGGAFPVIPPETAFIMTNLMQSVVTSGTGGRARAVGRPVAGKTGTTNDMK DAWFVGYVPQLVAGVWVGYDQERSLGAGGSGGQAAAPIWTDFMQRALAGLPVKSFPTPGNVTFALIDPRTGHLAREGTPG AVQECFIAGTEPTSYGAEPQADAGGAP >Mature_827_residues METYKAQPRQQNRRLKQRTGGKVLLAAFATVSTILFLAFIGYFFYLLGALPKVDRLADYRPPILSQVYGADGALVGEFYL ERRTVVPVDKMPKRLIQAFVSAEDSNFYQHKGIDYVGIARAAFKNLISMRKKEGASTITQQVAKSMLLTPEKKFSRKLKE AILAKRMEERLSKDEILYIYLNQIYLGAGAYGVQLAAETYFGKEVENLNLAEMAMLAGLPKAPNSYSPIKHLDRAKERQA YVLERMVKEGYITQAEAQYAKATPIVIQPLKKVNAEQSAYFLEQVRQQLVQKYGEERLYKDGLKIYTTMNGEMQKAAYTS VVNGLKAVDKRQGFRGAAKYLQEAEVEPFCKKVEDEIDDLSLKEGNVYQGVVTGVDPAKRELTVQVGERTGTVPRKNMEW AGKLELIPRFGKPEAKRAIGLGAVLELQVKVPDQNRTGAVFALDQAPEAQAALIALDPLTGGVRAMVGGYDFKKSQFNRA MQAKRNPGSAFKPVIYAAALDNGMTTASVIDDSQVEYESGAEKAWKPKNYDNVYRGPVTMREALTESINVVSVKILEQIG VGTAIEYAKKIGITSPLASNLTLALGSSSVTPIELTSAYAVFASGGYRTTPYFVTKVLDRDGNVLEETAEPKIPVFSRMS SAGEGDENTAPGENGEGAAPKPAEAGLNSAAGGAFPVIPPETAFIMTNLMQSVVTSGTGGRARAVGRPVAGKTGTTNDMK DAWFVGYVPQLVAGVWVGYDQERSLGAGGSGGQAAAPIWTDFMQRALAGLPVKSFPTPGNVTFALIDPRTGHLAREGTPG AVQECFIAGTEPTSYGAEPQADAGGAP
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=830, Percent_Identity=37.9518072289157, Blast_Score=478, Evalue=1e-136, Organism=Escherichia coli, GI1786343, Length=256, Percent_Identity=37.109375, Blast_Score=153, Evalue=4e-38, Organism=Escherichia coli, GI1788867, Length=188, Percent_Identity=36.7021276595745, Blast_Score=123, Evalue=4e-29, Organism=Escherichia coli, GI1789601, Length=178, Percent_Identity=34.2696629213483, Blast_Score=94, Evalue=5e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 89636; Mature: 89636
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METYKAQPRQQNRRLKQRTGGKVLLAAFATVSTILFLAFIGYFFYLLGALPKVDRLADYR CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC PPILSQVYGADGALVGEFYLERRTVVPVDKMPKRLIQAFVSAEDSNFYQHKGIDYVGIAR CHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHH AAFKNLISMRKKEGASTITQQVAKSMLLTPEKKFSRKLKEAILAKRMEERLSKDEILYIY HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE LNQIYLGAGAYGVQLAAETYFGKEVENLNLAEMAMLAGLPKAPNSYSPIKHLDRAKERQA EEEHHCCCCCHHHEEHHHHHHCCHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH YVLERMVKEGYITQAEAQYAKATPIVIQPLKKVNAEQSAYFLEQVRQQLVQKYGEERLYK HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH DGLKIYTTMNGEMQKAAYTSVVNGLKAVDKRQGFRGAAKYLQEAEVEPFCKKVEDEIDDL CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCC SLKEGNVYQGVVTGVDPAKRELTVQVGERTGTVPRKNMEWAGKLELIPRFGKPEAKRAIG CCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHC LGAVLELQVKVPDQNRTGAVFALDQAPEAQAALIALDPLTGGVRAMVGGYDFKKSQFNRA CCEEEEEEEECCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHCCCCCHHHHHHHH MQAKRNPGSAFKPVIYAAALDNGMTTASVIDDSQVEYESGAEKAWKPKNYDNVYRGPVTM HHHCCCCCCCCCHHHEEEHHCCCCCCHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHH REALTESINVVSVKILEQIGVGTAIEYAKKIGITSPLASNLTLALGSSSVTPIELTSAYA HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEHHHHEE VFASGGYRTTPYFVTKVLDRDGNVLEETAEPKIPVFSRMSSAGEGDENTAPGENGEGAAP EEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC KPAEAGLNSAAGGAFPVIPPETAFIMTNLMQSVVTSGTGGRARAVGRPVAGKTGTTNDMK CCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCC DAWFVGYVPQLVAGVWVGYDQERSLGAGGSGGQAAAPIWTDFMQRALAGLPVKSFPTPGN CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC VTFALIDPRTGHLAREGTPGAVQECFIAGTEPTSYGAEPQADAGGAP EEEEEECCCCCCCCCCCCCHHHHHHEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure METYKAQPRQQNRRLKQRTGGKVLLAAFATVSTILFLAFIGYFFYLLGALPKVDRLADYR CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC PPILSQVYGADGALVGEFYLERRTVVPVDKMPKRLIQAFVSAEDSNFYQHKGIDYVGIAR CHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHH AAFKNLISMRKKEGASTITQQVAKSMLLTPEKKFSRKLKEAILAKRMEERLSKDEILYIY HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE LNQIYLGAGAYGVQLAAETYFGKEVENLNLAEMAMLAGLPKAPNSYSPIKHLDRAKERQA EEEHHCCCCCHHHEEHHHHHHCCHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH YVLERMVKEGYITQAEAQYAKATPIVIQPLKKVNAEQSAYFLEQVRQQLVQKYGEERLYK HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH DGLKIYTTMNGEMQKAAYTSVVNGLKAVDKRQGFRGAAKYLQEAEVEPFCKKVEDEIDDL CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCC SLKEGNVYQGVVTGVDPAKRELTVQVGERTGTVPRKNMEWAGKLELIPRFGKPEAKRAIG CCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHC LGAVLELQVKVPDQNRTGAVFALDQAPEAQAALIALDPLTGGVRAMVGGYDFKKSQFNRA CCEEEEEEEECCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHCCCCCHHHHHHHH MQAKRNPGSAFKPVIYAAALDNGMTTASVIDDSQVEYESGAEKAWKPKNYDNVYRGPVTM HHHCCCCCCCCCHHHEEEHHCCCCCCHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHH REALTESINVVSVKILEQIGVGTAIEYAKKIGITSPLASNLTLALGSSSVTPIELTSAYA HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEHHHHEE VFASGGYRTTPYFVTKVLDRDGNVLEETAEPKIPVFSRMSSAGEGDENTAPGENGEGAAP EEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC KPAEAGLNSAAGGAFPVIPPETAFIMTNLMQSVVTSGTGGRARAVGRPVAGKTGTTNDMK CCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCC DAWFVGYVPQLVAGVWVGYDQERSLGAGGSGGQAAAPIWTDFMQRALAGLPVKSFPTPGN CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC VTFALIDPRTGHLAREGTPGAVQECFIAGTEPTSYGAEPQADAGGAP EEEEEECCCCCCCCCCCCCHHHHHHEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043; 7901733 [H]