| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is uvrB [H]
Identifier: 197116550
GI number: 197116550
Start: 180127
End: 182115
Strand: Direct
Name: uvrB [H]
Synonym: Gbem_0150
Alternate gene names: 197116550
Gene position: 180127-182115 (Clockwise)
Preceding gene: 197116549
Following gene: 308535149
Centisome position: 3.9
GC content: 62.9
Gene sequence:
>1989_bases ATGGACAAATTCGAACTGGTAACAAGTTTCGAGCCCCGCGGCGACCAACCCAGGGCCATCGCAGAACTGGCGGACGGAGT GCTGCGGGGCGATCCGCACCAGGTGCTCCTCGGGGTCACCGGGTCGGGCAAGACCTTCACCATGGCCCAGGTGATCGCAC GCTGCAACTGCCCCACCCTGGTCCTTGCGCCCAACAAGACGCTGGCCGCCCAGCTCTACGGCGAGTTCAAGGAACTGTTC CCCAACAACGCCGTCGAGTATTTCGTTTCCTACTACGACTATTACCAGCCTGAAGCCTACATCCCCTCCTCCGATACCTT CATCGAGAAGGACTCCTCGATAAACGACGAGATCGACAAGTTCAGGCACTCCGCCACCAGGAGCCTTTTGACCCGCCGCG ACGTCATCATCGTCGCCTCGGTTTCCTGCATTTACGGCATAGGCTCCCCCGAGTCGTACCAGGAGATGCAGATCCGCTTC CGGGAAGGGGACGAGGTAGGGCGCGACGAAATGCTGCAGCGTCTGGTGGCGATCCAGTATCAGAGAAACGACGTCGATTT CCACCGCGGCTCCTTCCGGGTCCGTGGGGACACGGTCGAGGTCTTCCCCGCCCACGACGACGAGCGGGCGCTCAGGATCG AGTTCTTCGGGGACACGGTGGATGCCATCTCCGAGATAGACCCTTTGCGCGGGGTGCAGCTGCAGAAGCTTTCCCGCTGC GCCATCTACCCTGCCTCCCATTACGTCGCCAGCCGCCAGACCCTGGAGCGGGCCGTGGAGCAGATCCGACTCGAACTGGA GGAACGGCTCCGCTACTTCAACTCGCAGAACATGCTGCTTGAGGCGCAGCGCATTGAGCAGAGGACCTTTTTCGACATCG AGATGATGGAGGAGATGGGTTTTTGCCAGGGGATCGAAAACTACTCGCGCCACTTCGACGGCCGCGCCGCCGGCGAGCCC CCTTATACGCTGATCGACTATTTCCCCAAGGACTTCCTGCTGGTGATCGACGAGTCCCACATCACCGTTTCGCAGGTGGG GGGGATGTACCGCGGCGACCGCAGCCGGAAAGAGACCCTGGTGAACTACGGTTTCAGGCTCCCCTCCGCCCTGGACAACC GCCCGCTCACCTTCCAGGAGTTCCAGAAGAAGCTGCACCAGACCATCTACGTTTCCGCGACACCGGCGGACTACGAGCTG AAGCTGGCGGAAGGGGTCGTGGTCGAGCAGCTGATCCGCCCCACCGGTCTTATCGACCCGGCCATCGAGGTGCGCCCGGC CGCCGGGCAGGTGGACGACCTGCTGCACGAGGCGCGCGAGACGGCGGCCAGGGGAGAACGGGTGCTGGTCACGACCCTTA CCAAGCGCATGGCCGAGGAGCTCACCGACTACTACCGCGAGCTTGGGATCCGCGTCCGTTACCTCCACTCCGACATCGAC ACCTTCCAGCGCATGGAGATCCTCAGGGACTTAAGGCTCGGCGAGTTCGACCTGCTGGTCGGGATCAACCTGCTCAGGGA AGGGCTCGACCTCCCCGAGGTCTCGCTGGTGGCGATCCTCGATGCGGACAAGGAAGGGTTCCTCCGCTCCACGAGGTCGC TGATCCAGACCTGCGGCCGCGCGGCGAGGAACGTGTCGGGGCGTGTCCTCATGTATGCGGACAAGGTGACCGGTTCCATG CAGGCCGCCATCGACGAAACCCTCAGGAGGCGCGCTTTGCAGACGGCCTACAACGAGGAGCACGGCATCACACCGGAGAG CGTGCGGAGGATGATCGGGAACGTGCTTCAGGCGCCTGAGGAGAAGGACTGGGTCACGGTGCCGGCATCGGCCGAGGAGT TCTTGAGCGTCAAGGAGCTGGAGAAGACGCTGAAGAGGCTGCGAAAGGAGATGCTGGCGGCGGCCAAGGCTCAGGAATTC GAAAGGGCCGCGGAGCTGAGGGACAAGATCAAGCGGCTGGAGGTTGCGGAAATCACCAGGGGAAGCTGA
Upstream 100 bases:
>100_bases CTATTGGCTGAGTGTCAACCAGCTCCCCCCCCAGAGAAATTGCGCGGCGGCCTGATCACCCTGTTGCCAAGGCGCGCCGA GGCCTGCTAATATCCCCGGC
Downstream 100 bases:
>100_bases GAAGCAATTGACAATTGACGATTGACGATTGACAACGAAACCCCCTCGGGCTTGGTGCGCGAGGGGGTTCTTGTTTGGAT CCACTAGCTCGGCATGGGGG
Product: excinuclease ABC subunit B
Products: NA
Alternate protein names: Protein uvrB; Excinuclease ABC subunit B [H]
Number of amino acids: Translated: 662; Mature: 662
Protein sequence:
>662_residues MDKFELVTSFEPRGDQPRAIAELADGVLRGDPHQVLLGVTGSGKTFTMAQVIARCNCPTLVLAPNKTLAAQLYGEFKELF PNNAVEYFVSYYDYYQPEAYIPSSDTFIEKDSSINDEIDKFRHSATRSLLTRRDVIIVASVSCIYGIGSPESYQEMQIRF REGDEVGRDEMLQRLVAIQYQRNDVDFHRGSFRVRGDTVEVFPAHDDERALRIEFFGDTVDAISEIDPLRGVQLQKLSRC AIYPASHYVASRQTLERAVEQIRLELEERLRYFNSQNMLLEAQRIEQRTFFDIEMMEEMGFCQGIENYSRHFDGRAAGEP PYTLIDYFPKDFLLVIDESHITVSQVGGMYRGDRSRKETLVNYGFRLPSALDNRPLTFQEFQKKLHQTIYVSATPADYEL KLAEGVVVEQLIRPTGLIDPAIEVRPAAGQVDDLLHEARETAARGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDID TFQRMEILRDLRLGEFDLLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGRAARNVSGRVLMYADKVTGSM QAAIDETLRRRALQTAYNEEHGITPESVRRMIGNVLQAPEEKDWVTVPASAEEFLSVKELEKTLKRLRKEMLAAAKAQEF ERAAELRDKIKRLEVAEITRGS
Sequences:
>Translated_662_residues MDKFELVTSFEPRGDQPRAIAELADGVLRGDPHQVLLGVTGSGKTFTMAQVIARCNCPTLVLAPNKTLAAQLYGEFKELF PNNAVEYFVSYYDYYQPEAYIPSSDTFIEKDSSINDEIDKFRHSATRSLLTRRDVIIVASVSCIYGIGSPESYQEMQIRF REGDEVGRDEMLQRLVAIQYQRNDVDFHRGSFRVRGDTVEVFPAHDDERALRIEFFGDTVDAISEIDPLRGVQLQKLSRC AIYPASHYVASRQTLERAVEQIRLELEERLRYFNSQNMLLEAQRIEQRTFFDIEMMEEMGFCQGIENYSRHFDGRAAGEP PYTLIDYFPKDFLLVIDESHITVSQVGGMYRGDRSRKETLVNYGFRLPSALDNRPLTFQEFQKKLHQTIYVSATPADYEL KLAEGVVVEQLIRPTGLIDPAIEVRPAAGQVDDLLHEARETAARGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDID TFQRMEILRDLRLGEFDLLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGRAARNVSGRVLMYADKVTGSM QAAIDETLRRRALQTAYNEEHGITPESVRRMIGNVLQAPEEKDWVTVPASAEEFLSVKELEKTLKRLRKEMLAAAKAQEF ERAAELRDKIKRLEVAEITRGS >Mature_662_residues MDKFELVTSFEPRGDQPRAIAELADGVLRGDPHQVLLGVTGSGKTFTMAQVIARCNCPTLVLAPNKTLAAQLYGEFKELF PNNAVEYFVSYYDYYQPEAYIPSSDTFIEKDSSINDEIDKFRHSATRSLLTRRDVIIVASVSCIYGIGSPESYQEMQIRF REGDEVGRDEMLQRLVAIQYQRNDVDFHRGSFRVRGDTVEVFPAHDDERALRIEFFGDTVDAISEIDPLRGVQLQKLSRC AIYPASHYVASRQTLERAVEQIRLELEERLRYFNSQNMLLEAQRIEQRTFFDIEMMEEMGFCQGIENYSRHFDGRAAGEP PYTLIDYFPKDFLLVIDESHITVSQVGGMYRGDRSRKETLVNYGFRLPSALDNRPLTFQEFQKKLHQTIYVSATPADYEL KLAEGVVVEQLIRPTGLIDPAIEVRPAAGQVDDLLHEARETAARGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDID TFQRMEILRDLRLGEFDLLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGRAARNVSGRVLMYADKVTGSM QAAIDETLRRRALQTAYNEEHGITPESVRRMIGNVLQAPEEKDWVTVPASAEEFLSVKELEKTLKRLRKEMLAAAKAQEF ERAAELRDKIKRLEVAEITRGS
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA
COG id: COG0556
COG function: function code L; Helicase subunit of the DNA excision repair complex
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 UVR domain [H]
Homologues:
Organism=Escherichia coli, GI1786996, Length=661, Percent_Identity=59.304084720121, Blast_Score=777, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR001943 - InterPro: IPR004807 - InterPro: IPR009055 [H]
Pfam domain/function: PF00271 Helicase_C; PF04851 ResIII; PF02151 UVR [H]
EC number: NA
Molecular weight: Translated: 75595; Mature: 75595
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS50151 UVR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKFELVTSFEPRGDQPRAIAELADGVLRGDPHQVLLGVTGSGKTFTMAQVIARCNCPTL CCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEE VLAPNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYIPSSDTFIEKDSSINDEIDK EECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCEECCCCCCHHHHHH FRHSATRSLLTRRDVIIVASVSCIYGIGSPESYQEMQIRFREGDEVGRDEMLQRLVAIQY HHHHHHHHHHHHCCEEEEEEHHHHEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH QRNDVDFHRGSFRVRGDTVEVFPAHDDERALRIEFFGDTVDAISEIDPLRGVQLQKLSRC CCCCCCEECCCEEEECCEEEEEECCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHH AIYPASHYVASRQTLERAVEQIRLELEERLRYFNSQNMLLEAQRIEQRTFFDIEMMEEMG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH FCQGIENYSRHFDGRAAGEPPYTLIDYFPKDFLLVIDESHITVSQVGGMYRGDRSRKETL HHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEEECCCEEHHHHCCCCCCCCHHHHHH VNYGFRLPSALDNRPLTFQEFQKKLHQTIYVSATPADYELKLAEGVVVEQLIRPTGLIDP HHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCEEEHHHHHHHHHHHCCCCCCCC AIEVRPAAGQVDDLLHEARETAARGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDID CCEEECCCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHH TFQRMEILRDLRLGEFDLLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGR HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHH AARNVSGRVLMYADKVTGSMQAAIDETLRRRALQTAYNEEHGITPESVRRMIGNVLQAPE HHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC EKDWVTVPASAEEFLSVKELEKTLKRLRKEMLAAAKAQEFERAAELRDKIKRLEVAEITR CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GS CC >Mature Secondary Structure MDKFELVTSFEPRGDQPRAIAELADGVLRGDPHQVLLGVTGSGKTFTMAQVIARCNCPTL CCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEE VLAPNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYIPSSDTFIEKDSSINDEIDK EECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCEECCCCCCHHHHHH FRHSATRSLLTRRDVIIVASVSCIYGIGSPESYQEMQIRFREGDEVGRDEMLQRLVAIQY HHHHHHHHHHHHCCEEEEEEHHHHEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH QRNDVDFHRGSFRVRGDTVEVFPAHDDERALRIEFFGDTVDAISEIDPLRGVQLQKLSRC CCCCCCEECCCEEEECCEEEEEECCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHH AIYPASHYVASRQTLERAVEQIRLELEERLRYFNSQNMLLEAQRIEQRTFFDIEMMEEMG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH FCQGIENYSRHFDGRAAGEPPYTLIDYFPKDFLLVIDESHITVSQVGGMYRGDRSRKETL HHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEEECCCEEHHHHCCCCCCCCHHHHHH VNYGFRLPSALDNRPLTFQEFQKKLHQTIYVSATPADYELKLAEGVVVEQLIRPTGLIDP HHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCEEEHHHHHHHHHHHCCCCCCCC AIEVRPAAGQVDDLLHEARETAARGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDID CCEEECCCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHH TFQRMEILRDLRLGEFDLLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGR HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHH AARNVSGRVLMYADKVTGSMQAAIDETLRRRALQTAYNEEHGITPESVRRMIGNVLQAPE HHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC EKDWVTVPASAEEFLSVKELEKTLKRLRKEMLAAAKAQEFERAAELRDKIKRLEVAEITR CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GS CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA