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The map label for this gene is 197116541

Identifier: 197116541

GI number: 197116541

Start: 173716

End: 174495

Strand: Reverse

Name: 197116541

Synonym: Gbem_0141

Alternate gene names: NA

Gene position: 174495-173716 (Counterclockwise)

Preceding gene: 197116548

Following gene: 197116540

Centisome position: 3.78

GC content: 56.15

Gene sequence:

>780_bases
ATGAGGGCGATGTGGTCCGGTTCGATCAGCTTTGGCCTGGTGAATATCCCGGTGAAGCTTTACAGCGGTTCCCAAAGCAA
CACGCTTGACTTGGACATGCTGCGCAAGAGCGATCTCTGCCCCATCAAATACCTGAGGGTCTGCAAAAATGACAATCAGG
AGGTCCCCTATGAGGAGATCGTGAAAGGGTATGAGTACAGCGACGGCGAATACATCGTGCTGACCGACCAGGACTTCGAG
AACGCGAGCCTGGAAAAAACCCACCTCATCGATATCGTCGATTTCATAGACGAGCGGGAGATCGACACCAGGTTCTTCGA
GAAGCCGTACTACCTGGAACCGGAGAAGACCGGGCCCAAAGCGTACGCGCTCTTGAGGGAGGCGCTGAAGCGTTCGGGAA
AGGTGGGAGTAGCACATTACGTGCTCAGGAACAGGGGGAGCATCGGCATCTTAAGACCGCTGGACCAGGTGCTGGTGCTG
AACCAGATCAGGTATGCCGAGGAGGTGCGGGACGCCTCGGACCTGAAACTTCCGGGGGACGAGAACCTGCGCGAGCAGGA
GGTGACGCTGGCGCTTTCCCTGATCGACCAATTGACGGTGAAGTTCGACCCAGAGAAATACAAGGACCAGTACGTAGACG
ACCTGAAGCGGATCATAGAGGAAAAGGCCCAGGGAAGAATGCCCGCCCCCCAGGCCAAACAGCCTCCTCCACCGAGAGTC
GCCGACATGATGGCGCTTTTGAAGGAGAGCATTAAGCAGAAAAGAAAAGAGGCTGCCTGA

Upstream 100 bases:

>100_bases
TGCTCCATTGATGGTAAAATCCACCTGCATCGACAAATTCAGCAGTGTAAACCGCGCCGTGCCTCGTCGAACAAGGTACG
GCAAGGTGAGGAGGTGAGAC

Downstream 100 bases:

>100_bases
AGCAACGAAAAGGGGACAGGCTACTTTTCCGAACAAATAAGTAGCCTGTCCCCTTCCCCCCCATCCGACCGGCTCATCCT
CACCTGATTTTTGACCATCC

Product: DNA-binding Ku protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRAMWSGSISFGLVNIPVKLYSGSQSNTLDLDMLRKSDLCPIKYLRVCKNDNQEVPYEEIVKGYEYSDGEYIVLTDQDFE
NASLEKTHLIDIVDFIDEREIDTRFFEKPYYLEPEKTGPKAYALLREALKRSGKVGVAHYVLRNRGSIGILRPLDQVLVL
NQIRYAEEVRDASDLKLPGDENLREQEVTLALSLIDQLTVKFDPEKYKDQYVDDLKRIIEEKAQGRMPAPQAKQPPPPRV
ADMMALLKESIKQKRKEAA

Sequences:

>Translated_259_residues
MRAMWSGSISFGLVNIPVKLYSGSQSNTLDLDMLRKSDLCPIKYLRVCKNDNQEVPYEEIVKGYEYSDGEYIVLTDQDFE
NASLEKTHLIDIVDFIDEREIDTRFFEKPYYLEPEKTGPKAYALLREALKRSGKVGVAHYVLRNRGSIGILRPLDQVLVL
NQIRYAEEVRDASDLKLPGDENLREQEVTLALSLIDQLTVKFDPEKYKDQYVDDLKRIIEEKAQGRMPAPQAKQPPPPRV
ADMMALLKESIKQKRKEAA
>Mature_259_residues
MRAMWSGSISFGLVNIPVKLYSGSQSNTLDLDMLRKSDLCPIKYLRVCKNDNQEVPYEEIVKGYEYSDGEYIVLTDQDFE
NASLEKTHLIDIVDFIDEREIDTRFFEKPYYLEPEKTGPKAYALLREALKRSGKVGVAHYVLRNRGSIGILRPLDQVLVL
NQIRYAEEVRDASDLKLPGDENLREQEVTLALSLIDQLTVKFDPEKYKDQYVDDLKRIIEEKAQGRMPAPQAKQPPPPRV
ADMMALLKESIKQKRKEAA

Specific function: Could be involved in DNA repair [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 29771; Mature: 29771

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAMWSGSISFGLVNIPVKLYSGSQSNTLDLDMLRKSDLCPIKYLRVCKNDNQEVPYEEI
CCCCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHH
VKGYEYSDGEYIVLTDQDFENASLEKTHLIDIVDFIDEREIDTRFFEKPYYLEPEKTGPK
HCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCEECCCCCCHH
AYALLREALKRSGKVGVAHYVLRNRGSIGILRPLDQVLVLNQIRYAEEVRDASDLKLPGD
HHHHHHHHHHHCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
ENLREQEVTLALSLIDQLTVKFDPEKYKDQYVDDLKRIIEEKAQGRMPAPQAKQPPPPRV
CCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
ADMMALLKESIKQKRKEAA
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRAMWSGSISFGLVNIPVKLYSGSQSNTLDLDMLRKSDLCPIKYLRVCKNDNQEVPYEEI
CCCCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHH
VKGYEYSDGEYIVLTDQDFENASLEKTHLIDIVDFIDEREIDTRFFEKPYYLEPEKTGPK
HCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCEECCCCCCHH
AYALLREALKRSGKVGVAHYVLRNRGSIGILRPLDQVLVLNQIRYAEEVRDASDLKLPGD
HHHHHHHHHHHCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
ENLREQEVTLALSLIDQLTVKFDPEKYKDQYVDDLKRIIEEKAQGRMPAPQAKQPPPPRV
CCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
ADMMALLKESIKQKRKEAA
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA