| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is yhdF [H]
Identifier: 197116538
GI number: 197116538
Start: 170631
End: 171491
Strand: Reverse
Name: yhdF [H]
Synonym: Gbem_0138
Alternate gene names: 197116538
Gene position: 171491-170631 (Counterclockwise)
Preceding gene: 197116539
Following gene: 197116537
Centisome position: 3.72
GC content: 62.49
Gene sequence:
>861_bases ATGCCGACCGAAGAAGGGAAACAGTTCCCGCCGCAGCGCCAGGCGCAGCCGGGAAAAGAAGCCGAGATGACGCCCCGGCC GCAAAGCGGCGAGTTCGAGTACCGCGGGGCCGGAAAGCTGCAGGGAAAAACCGCCCTCATCACCGGCGGCGACAGCGGCA TCGGCCGGGCCGTCGCCATCGCCTTTGCCCGCGAGGGTGCCAACATCGCTTTCGGATACCTGGAGGAAGACCAGGACGCG AAAGAGACCCGGGACATCGTGGAGCGGGAGGGGGTGCGCTGCCTCGCCTTCCGGGGCGACGTGGGTCAGGAGCAGTTCTG CCTCGACATCGTGAAAAAGACGTTGGAGGCATTTGGCCGGCTGGACATAGTGGTGAACAACGCGGCCGAGCAACATTACC GCGAGAGCATAGAAGAGATCTCCTCTGAGCAGTTGGAGCGGACCTTCAGGACCAACATCTTTTCCTATTTCTACCTGGTG AAGGCCGCTCTCAAGCATTTGCAAGAAGGATCGCGGATCATCAACACCACCTCGGTAACCGCCTACAAGGGAAACCCCAA CCTCCTCGACTACTCCTCCACTAAGGGGGCCATCGTTGCCTTCACCCGCTCCCTTGCCCTCTCGCTCGCTGGAAAGGGGA TCCTGGTGAACGCCGTCGCCCCAGGTCCGATCTGGACCCCGCTCATCCCCGGAACCTTTCCGGAGGAGAAGACCGAGCAG TTCGGCGGGAACGTGCTTTTGAAGAGGGCGGGACAGCCGGTGGAAGTGGCCCACAGCTACGTCTTCCTCGCCTCCGAAGG GGGCTCCTACATGACCGGGCAGGTGCTGCACCCAAACGGCGGAACCATCGTAGGAGGGTAG
Upstream 100 bases:
>100_bases CTGCATCAAGATCGCGCTCACACCGGAGCACGCCGCCCCGAAGACAGAACCAGCCTCCCCGTAACCCGGCCGCGCAGCAC GCCGTCAAAGGAGATACCAG
Downstream 100 bases:
>100_bases CTAACCCTTGCCTCGCAAGGTGGCAGGGTGACCACGTCAAGGAGCCGACCATGTTCTCACTGCGCAGATACTTCAAGCTG GGCGACACGAGCTACAAGGA
Product: short-chain dehydrogenase/reductase family oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MPTEEGKQFPPQRQAQPGKEAEMTPRPQSGEFEYRGAGKLQGKTALITGGDSGIGRAVAIAFAREGANIAFGYLEEDQDA KETRDIVEREGVRCLAFRGDVGQEQFCLDIVKKTLEAFGRLDIVVNNAAEQHYRESIEEISSEQLERTFRTNIFSYFYLV KAALKHLQEGSRIINTTSVTAYKGNPNLLDYSSTKGAIVAFTRSLALSLAGKGILVNAVAPGPIWTPLIPGTFPEEKTEQ FGGNVLLKRAGQPVEVAHSYVFLASEGGSYMTGQVLHPNGGTIVGG
Sequences:
>Translated_286_residues MPTEEGKQFPPQRQAQPGKEAEMTPRPQSGEFEYRGAGKLQGKTALITGGDSGIGRAVAIAFAREGANIAFGYLEEDQDA KETRDIVEREGVRCLAFRGDVGQEQFCLDIVKKTLEAFGRLDIVVNNAAEQHYRESIEEISSEQLERTFRTNIFSYFYLV KAALKHLQEGSRIINTTSVTAYKGNPNLLDYSSTKGAIVAFTRSLALSLAGKGILVNAVAPGPIWTPLIPGTFPEEKTEQ FGGNVLLKRAGQPVEVAHSYVFLASEGGSYMTGQVLHPNGGTIVGG >Mature_285_residues PTEEGKQFPPQRQAQPGKEAEMTPRPQSGEFEYRGAGKLQGKTALITGGDSGIGRAVAIAFAREGANIAFGYLEEDQDAK ETRDIVEREGVRCLAFRGDVGQEQFCLDIVKKTLEAFGRLDIVVNNAAEQHYRESIEEISSEQLERTFRTNIFSYFYLVK AALKHLQEGSRIINTTSVTAYKGNPNLLDYSSTKGAIVAFTRSLALSLAGKGILVNAVAPGPIWTPLIPGTFPEEKTEQF GGNVLLKRAGQPVEVAHSYVFLASEGGSYMTGQVLHPNGGTIVGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=34.1991341991342, Blast_Score=112, Evalue=6e-25, Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=33.6099585062241, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=28.8617886178862, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=29.9610894941634, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=29.6442687747036, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=30.7086614173228, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI4504505, Length=197, Percent_Identity=32.48730964467, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI66933014, Length=257, Percent_Identity=29.5719844357977, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI31542939, Length=211, Percent_Identity=32.2274881516588, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=26.1044176706827, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI5031737, Length=258, Percent_Identity=29.4573643410853, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=29.296875, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI33667109, Length=208, Percent_Identity=30.2884615384615, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=26.5873015873016, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI210032110, Length=188, Percent_Identity=29.7872340425532, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI224922801, Length=182, Percent_Identity=31.8681318681319, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI225579078, Length=205, Percent_Identity=29.7560975609756, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI83715985, Length=255, Percent_Identity=27.4509803921569, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=24.7252747252747, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI142976729, Length=220, Percent_Identity=26.3636363636364, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1789378, Length=280, Percent_Identity=46.0714285714286, Blast_Score=251, Evalue=4e-68, Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=31.6872427983539, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=34.5098039215686, Blast_Score=121, Evalue=6e-29, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=31.8367346938775, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=30.7692307692308, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=31.8367346938775, Blast_Score=111, Evalue=7e-26, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=31.8548387096774, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=31.7991631799163, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=30.7086614173228, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=27.3092369477912, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=28.4615384615385, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=27.2373540856031, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787545, Length=251, Percent_Identity=24.3027888446215, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=33.8403041825095, Blast_Score=124, Evalue=5e-29, Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=31.4606741573034, Blast_Score=114, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=31.9548872180451, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=31.0756972111554, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=29.3877551020408, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=30.9160305343511, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=31.8352059925094, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=31.2977099236641, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI72000259, Length=267, Percent_Identity=31.0861423220974, Blast_Score=105, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=30.3370786516854, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17559104, Length=259, Percent_Identity=32.4324324324324, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=30.9433962264151, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=30.9236947791165, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=29.6875, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=30.4511278195489, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=31.4285714285714, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=29.2134831460674, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=30.4511278195489, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=31.6, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=30.4182509505703, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=30.188679245283, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=29.9595141700405, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=30.6818181818182, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=28.6274509803922, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17538182, Length=230, Percent_Identity=31.304347826087, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=27.4436090225564, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17564282, Length=207, Percent_Identity=29.4685990338164, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193203117, Length=247, Percent_Identity=29.5546558704453, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17565030, Length=266, Percent_Identity=29.6992481203008, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI193203115, Length=246, Percent_Identity=29.2682926829268, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=29.1828793774319, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17567345, Length=218, Percent_Identity=27.9816513761468, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=27.710843373494, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17568967, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=28.1124497991968, Blast_Score=68, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=267, Percent_Identity=26.9662921348315, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=29, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=34.8178137651822, Blast_Score=114, Evalue=5e-26, Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=34.9593495934959, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=34.0080971659919, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=29.718875502008, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=29.6, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=31.3725490196078, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24644337, Length=249, Percent_Identity=35.3413654618474, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI17737361, Length=234, Percent_Identity=26.9230769230769, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=26.7489711934156, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24581726, Length=210, Percent_Identity=30, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24580925, Length=225, Percent_Identity=28.8888888888889, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI281364892, Length=172, Percent_Identity=28.4883720930233, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24584748, Length=189, Percent_Identity=26.4550264550265, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI161076933, Length=189, Percent_Identity=26.4550264550265, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI18859837, Length=195, Percent_Identity=28.2051282051282, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI45554248, Length=250, Percent_Identity=26.8, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24640117, Length=250, Percent_Identity=26.8, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24640492, Length=187, Percent_Identity=25.668449197861, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI22024069, Length=221, Percent_Identity=27.6018099547511, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31001; Mature: 30870
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTEEGKQFPPQRQAQPGKEAEMTPRPQSGEFEYRGAGKLQGKTALITGGDSGIGRAVAI CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCHHEEE AFAREGANIAFGYLEEDQDAKETRDIVEREGVRCLAFRGDVGQEQFCLDIVKKTLEAFGR EEECCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC LDIVVNNAAEQHYRESIEEISSEQLERTFRTNIFSYFYLVKAALKHLQEGSRIINTTSVT EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE AYKGNPNLLDYSSTKGAIVAFTRSLALSLAGKGILVNAVAPGPIWTPLIPGTFPEEKTEQ EECCCCCEEEECCCCCEEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHH FGGNVLLKRAGQPVEVAHSYVFLASEGGSYMTGQVLHPNGGTIVGG CCCCEEEECCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCEECCC >Mature Secondary Structure PTEEGKQFPPQRQAQPGKEAEMTPRPQSGEFEYRGAGKLQGKTALITGGDSGIGRAVAI CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCHHEEE AFAREGANIAFGYLEEDQDAKETRDIVEREGVRCLAFRGDVGQEQFCLDIVKKTLEAFGR EEECCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC LDIVVNNAAEQHYRESIEEISSEQLERTFRTNIFSYFYLVKAALKHLQEGSRIINTTSVT EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE AYKGNPNLLDYSSTKGAIVAFTRSLALSLAGKGILVNAVAPGPIWTPLIPGTFPEEKTEQ EECCCCCEEEECCCCCEEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHH FGGNVLLKRAGQPVEVAHSYVFLASEGGSYMTGQVLHPNGGTIVGG CCCCEEEECCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]