| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116455
Identifier: 197116455
GI number: 197116455
Start: 66327
End: 68432
Strand: Direct
Name: 197116455
Synonym: Gbem_0055
Alternate gene names: NA
Gene position: 66327-68432 (Clockwise)
Preceding gene: 197116453
Following gene: 197116456
Centisome position: 1.44
GC content: 61.97
Gene sequence:
>2106_bases ATGGATCTGAGAAAAACACATTCAGTAATACTGACAGAAGGGGACCCCGAACAGAAAAGGTCCGAGATACTGGATTACTT CCATGCCACCTTCACCATCGACGAGCGGCTCTATGAGACCCTGAAGGACGAATCGACCTTCTATCTTAAGGGGGACCACC TCCGGCATCCGCTCATCTTCTACTACGGCCATACGGCTACCTTCTTCATCAACAAGCTCATCATCGCCCGGGTCATAGAC CGGCGCGTGAATCCCCGCTTCGAATCGCTCTTCGCCGTCGGCGTGGACGAAATGTCCTGGGACGACCTGAACGAGTCTCA TTACGACTGGCCCACCCCCGGCGAGGTGAAGCGTTACCGGGACCAGGTGCGCGACCTGGTGGACGGCCTGATCAAGACGC TGCCGCTTACCCTCCCCATCACCTGGGAACATCCCTTCTGGGCCATCATGATGGGGATCGAGCACGAGCGGATCCACCTG GAGACCTCGTCGGTGCTGATCCGCCAGCTTCCCCTGGACCAGGTGCGGCGCCACGATTTCTGGGAAATCTGCCGGGAGTC CGGCGAGCCCGCGGCAAACGAACTGCTGCCGGTTGCCGCCGGGAGGGTGAGGCTTGGGAAAGATGAAGGGCATCCCCTCT ACGGCTGGGACAACGAGTACGGAAGCCGCGAGGCGAAGGTCGAGGCTTTCTCCGCCTCGAAGTTCCTGGTCTCGAACCGC GAGTACCTAGCCTTCGTCAAGGCCGGGGGGTACAGGGAGCGGGGGTGGTGGACGGAGGAGGGGTGGAACTGGCGCAGCTT TAAGCAGGCGGAGCATCCTCTTTTCTGGGTGGAGCGCGAATGGGGGTGGGGGCTCAGAACCATGCTGGAGATCATCGATC TTCCGTGGAACTGGCCGGTCGAGGTGAATTATCTGGAGGCGAAGGCGTTCTGCAACTGGCTCTCCGCTAAAAGCGGCAAA TCGATCAGGCTCCCGACCGAGGATGAGTGGTACCACCTGCGCGACCTGGCGGGGGTGCCGGACCAGCCCGGATGGAGCCG GGCGCCGGGCAACATAAACCTCGAATACTGGGCTTCCTCCTGCCCGGTGGGCCGATTCGCCTTCGGCGATTTCTTCGACC TCATCGGCAACGTCTGGCAGTGGACGGAGACTCCCATCTATCCCTTCCACGGCTTCCGGGTCCATCCCTGGTACGACGAC TTCTCGACCCCCACCTTCGACACGCGGCACAACCTGATCAAGGGGGGCTCCTGGATCTCGACCGGCAACGAAGCGACCCG CGATTCACGCTACGCCTTCAGGAGGCACTTCTTCCAGCACGCCGGTTTCCGCTACGTCGAAAGCGCGCATCCTGTCGAGA TCCACGAGGACCCGTACGAGACGGACGCGCTTGCCGCGCAGTATTGCGATGCGCACTACGGACCCGAGCATTTCGGAGTC CCCAACTTCCCCAGGGCCTGCGCGGAGATCTGCCTTGAGTTGACCCGCGGGCGCTCCCGGGGGCATGCGCTCGACCTGGG GTGCGCCGTCGGGCGGGCCAGCTTCGAGCTTGCCCGGGGCTTTGACCAGGTGACTGGGCTCGATTTTTCGAGCCGCTTCT TCCGCCTGGCCGCGAGGATGCAGGATGAGGGATTTCTCCGCTATGCGCTGCCGGAGGAGGGGGAGGTGGTTTCCTTCAAC GAGCTGGAGCTGGCGGATCTGGGGCTTAAGGAGGTCAGGGAGCGGGTCGAGTTTTTCCAGGCGGACGCCTGCAACCTCCC CGACAAGTTCACCGGCTACGACCTGGTACTGGCTGCGAACCTGATCGACCGGCTATATTCGCCGCGCCGCTTCCTGGCGG CGATACGCGAAAGGCTCAACCCCGGCGGGCTCCTGGTGATCGCGTCCCCCTATACCTGGCTTGAGGAATACACGAAAAAG GACGAGTGGTTGGGAGGTTACCGGGAAGCGGGAGAACCGGTGTGGACTATAGATGGACTATCGCGGGAACTTTTGCCATA CTTCACGCCGCTCGGTGCTCCGCGCGAGATCCCGTTCGTGATCAGGGAGACGCGCCGCAAGTTCCAGTACAGCATCGCGC AACTGACGGTATGGGAGCTTAAATGA
Upstream 100 bases:
>100_bases AGTCTGATCATACTGACATAGCGCCTGTAACAGCAGGTACTAAAGCCAGTATATCGGCAACTGTTGATGACATTAACAAA AGGAAATAGTGAGCGTTATT
Downstream 100 bases:
>100_bases CCAAAAAGTTCGACTTCGACGAGATCATCGACCGGCGCGGCACCTCCAGCGAAAAGTGGGACAAGTACCGCGACCGCGAC ATCATTCCCCTCTGGGTGGC
Product: SAM-dependent methyltransferase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 701; Mature: 701
Protein sequence:
>701_residues MDLRKTHSVILTEGDPEQKRSEILDYFHATFTIDERLYETLKDESTFYLKGDHLRHPLIFYYGHTATFFINKLIIARVID RRVNPRFESLFAVGVDEMSWDDLNESHYDWPTPGEVKRYRDQVRDLVDGLIKTLPLTLPITWEHPFWAIMMGIEHERIHL ETSSVLIRQLPLDQVRRHDFWEICRESGEPAANELLPVAAGRVRLGKDEGHPLYGWDNEYGSREAKVEAFSASKFLVSNR EYLAFVKAGGYRERGWWTEEGWNWRSFKQAEHPLFWVEREWGWGLRTMLEIIDLPWNWPVEVNYLEAKAFCNWLSAKSGK SIRLPTEDEWYHLRDLAGVPDQPGWSRAPGNINLEYWASSCPVGRFAFGDFFDLIGNVWQWTETPIYPFHGFRVHPWYDD FSTPTFDTRHNLIKGGSWISTGNEATRDSRYAFRRHFFQHAGFRYVESAHPVEIHEDPYETDALAAQYCDAHYGPEHFGV PNFPRACAEICLELTRGRSRGHALDLGCAVGRASFELARGFDQVTGLDFSSRFFRLAARMQDEGFLRYALPEEGEVVSFN ELELADLGLKEVRERVEFFQADACNLPDKFTGYDLVLAANLIDRLYSPRRFLAAIRERLNPGGLLVIASPYTWLEEYTKK DEWLGGYREAGEPVWTIDGLSRELLPYFTPLGAPREIPFVIRETRRKFQYSIAQLTVWELK
Sequences:
>Translated_701_residues MDLRKTHSVILTEGDPEQKRSEILDYFHATFTIDERLYETLKDESTFYLKGDHLRHPLIFYYGHTATFFINKLIIARVID RRVNPRFESLFAVGVDEMSWDDLNESHYDWPTPGEVKRYRDQVRDLVDGLIKTLPLTLPITWEHPFWAIMMGIEHERIHL ETSSVLIRQLPLDQVRRHDFWEICRESGEPAANELLPVAAGRVRLGKDEGHPLYGWDNEYGSREAKVEAFSASKFLVSNR EYLAFVKAGGYRERGWWTEEGWNWRSFKQAEHPLFWVEREWGWGLRTMLEIIDLPWNWPVEVNYLEAKAFCNWLSAKSGK SIRLPTEDEWYHLRDLAGVPDQPGWSRAPGNINLEYWASSCPVGRFAFGDFFDLIGNVWQWTETPIYPFHGFRVHPWYDD FSTPTFDTRHNLIKGGSWISTGNEATRDSRYAFRRHFFQHAGFRYVESAHPVEIHEDPYETDALAAQYCDAHYGPEHFGV PNFPRACAEICLELTRGRSRGHALDLGCAVGRASFELARGFDQVTGLDFSSRFFRLAARMQDEGFLRYALPEEGEVVSFN ELELADLGLKEVRERVEFFQADACNLPDKFTGYDLVLAANLIDRLYSPRRFLAAIRERLNPGGLLVIASPYTWLEEYTKK DEWLGGYREAGEPVWTIDGLSRELLPYFTPLGAPREIPFVIRETRRKFQYSIAQLTVWELK >Mature_701_residues MDLRKTHSVILTEGDPEQKRSEILDYFHATFTIDERLYETLKDESTFYLKGDHLRHPLIFYYGHTATFFINKLIIARVID RRVNPRFESLFAVGVDEMSWDDLNESHYDWPTPGEVKRYRDQVRDLVDGLIKTLPLTLPITWEHPFWAIMMGIEHERIHL ETSSVLIRQLPLDQVRRHDFWEICRESGEPAANELLPVAAGRVRLGKDEGHPLYGWDNEYGSREAKVEAFSASKFLVSNR EYLAFVKAGGYRERGWWTEEGWNWRSFKQAEHPLFWVEREWGWGLRTMLEIIDLPWNWPVEVNYLEAKAFCNWLSAKSGK SIRLPTEDEWYHLRDLAGVPDQPGWSRAPGNINLEYWASSCPVGRFAFGDFFDLIGNVWQWTETPIYPFHGFRVHPWYDD FSTPTFDTRHNLIKGGSWISTGNEATRDSRYAFRRHFFQHAGFRYVESAHPVEIHEDPYETDALAAQYCDAHYGPEHFGV PNFPRACAEICLELTRGRSRGHALDLGCAVGRASFELARGFDQVTGLDFSSRFFRLAARMQDEGFLRYALPEEGEVVSFN ELELADLGLKEVRERVEFFQADACNLPDKFTGYDLVLAANLIDRLYSPRRFLAAIRERLNPGGLLVIASPYTWLEEYTKK DEWLGGYREAGEPVWTIDGLSRELLPYFTPLGAPREIPFVIRETRRKFQYSIAQLTVWELK
Specific function: Unknown
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81718; Mature: 81718
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLRKTHSVILTEGDPEQKRSEILDYFHATFTIDERLYETLKDESTFYLKGDHLRHPLIF CCCCCCCEEEEECCCCHHHHHHHHHHHHHHEEEHHHHHHHHCCCCEEEEECCCCCCCEEE YYGHTATFFINKLIIARVIDRRVNPRFESLFAVGVDEMSWDDLNESHYDWPTPGEVKRYR EECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH DQVRDLVDGLIKTLPLTLPITWEHPFWAIMMGIEHERIHLETSSVLIRQLPLDQVRRHDF HHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCEEEEEHHHHHHHHCCHHHHHCCHH WEICRESGEPAANELLPVAAGRVRLGKDEGHPLYGWDNEYGSREAKVEAFSASKFLVSNR HHHHHHCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCHHEECCC EYLAFVKAGGYRERGWWTEEGWNWRSFKQAEHPLFWVEREWGWGLRTMLEIIDLPWNWPV CEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCE EVNYLEAKAFCNWLSAKSGKSIRLPTEDEWYHLRDLAGVPDQPGWSRAPGNINLEYWASS EEEEEHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEECCC CPVGRFAFGDFFDLIGNVWQWTETPIYPFHGFRVHPWYDDFSTPTFDTRHNLIKGGSWIS CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHCCCCEEE TGNEATRDSRYAFRRHFFQHAGFRYVESAHPVEIHEDPYETDALAAQYCDAHYGPEHFGV CCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCC PNFPRACAEICLELTRGRSRGHALDLGCAVGRASFELARGFDQVTGLDFSSRFFRLAARM CCCHHHHHHHHHHHHCCCCCCCEEEHHHHHCHHHHHHHHCHHHHCCCCHHHHHHHHHHHH QDEGFLRYALPEEGEVVSFNELELADLGLKEVRERVEFFQADACNLPDKFTGYDLVLAAN CCCCCEEEECCCCCCEEEECCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH LIDRLYSPRRFLAAIRERLNPGGLLVIASPYTWLEEYTKKDEWLGGYREAGEPVWTIDGL HHHHHCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCHHHHCCCHHHCCCCEEEECCC SRELLPYFTPLGAPREIPFVIRETRRKFQYSIAQLTVWELK CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECC >Mature Secondary Structure MDLRKTHSVILTEGDPEQKRSEILDYFHATFTIDERLYETLKDESTFYLKGDHLRHPLIF CCCCCCCEEEEECCCCHHHHHHHHHHHHHHEEEHHHHHHHHCCCCEEEEECCCCCCCEEE YYGHTATFFINKLIIARVIDRRVNPRFESLFAVGVDEMSWDDLNESHYDWPTPGEVKRYR EECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH DQVRDLVDGLIKTLPLTLPITWEHPFWAIMMGIEHERIHLETSSVLIRQLPLDQVRRHDF HHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCEEEEEHHHHHHHHCCHHHHHCCHH WEICRESGEPAANELLPVAAGRVRLGKDEGHPLYGWDNEYGSREAKVEAFSASKFLVSNR HHHHHHCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCHHEECCC EYLAFVKAGGYRERGWWTEEGWNWRSFKQAEHPLFWVEREWGWGLRTMLEIIDLPWNWPV CEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCE EVNYLEAKAFCNWLSAKSGKSIRLPTEDEWYHLRDLAGVPDQPGWSRAPGNINLEYWASS EEEEEHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEECCC CPVGRFAFGDFFDLIGNVWQWTETPIYPFHGFRVHPWYDDFSTPTFDTRHNLIKGGSWIS CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHCCCCEEE TGNEATRDSRYAFRRHFFQHAGFRYVESAHPVEIHEDPYETDALAAQYCDAHYGPEHFGV CCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCC PNFPRACAEICLELTRGRSRGHALDLGCAVGRASFELARGFDQVTGLDFSSRFFRLAARM CCCHHHHHHHHHHHHCCCCCCCEEEHHHHHCHHHHHHHHCHHHHCCCCHHHHHHHHHHHH QDEGFLRYALPEEGEVVSFNELELADLGLKEVRERVEFFQADACNLPDKFTGYDLVLAAN CCCCCEEEECCCCCCEEEECCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH LIDRLYSPRRFLAAIRERLNPGGLLVIASPYTWLEEYTKKDEWLGGYREAGEPVWTIDGL HHHHHCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCHHHHCCCHHHCCCCEEEECCC SRELLPYFTPLGAPREIPFVIRETRRKFQYSIAQLTVWELK CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA