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The map label for this gene is ykgA [C]

Identifier: 197106402

GI number: 197106402

Start: 3363320

End: 3364171

Strand: Direct

Name: ykgA [C]

Synonym: PHZ_c2941

Alternate gene names: 197106402

Gene position: 3363320-3364171 (Clockwise)

Preceding gene: 197106397

Following gene: 197106404

Centisome position: 84.16

GC content: 75.82

Gene sequence:

>852_bases
ATGACCTACGTCCACCGGTTCCGCGACACACCCCATCCGCATCTGGCGTTCGGCCCTACGCGCGCCTGGGAGGGCCTGAG
CGCCGTGCGCGTGCGCGCCAGTCCCGGCCGGCATCCGGGCGCGGCGAGCGGCGAGCACCGGCTGCTGTTCTACCTGACCT
CGGACGTGCGGGCCGACTGCGCCTGCGAAGGCGTCGGCGGCGGCCGGGTGCTGGCCGCCGCGGACTTCGACCTCGTGCCG
GCGGGCGCCTCGGGCGTCTGGGAGGACCACGGGCCCGTGGACTTCATCTCGGTCCGCCTCGCGCCGGCCGTGGTGGCCGA
GGCCGCCGAGGCGCTGGGCGTTCCGGAGGCGCGGGCCGATCTCGCGCCGCGGCTTGGGGCCCGGGACCCGCTGGTGAGCC
GCCTCGTCTTCGCCCTCGCCGCCGAGGTCGAGGCGCCCGAGGGGGCCTCGCGCCTCTACGCCGACAGTCTGGCGCTCGCC
CTGGCCACGCGGCTGCTGCAGGAGGCCCCCGAGGCGCGCGGCGGCCGCCAGACCCTGTCCAAGCCGCAGCTGCGGCGCAT
CGTCGAGCACGTGGAGGCCAACCTGGAGGGCGAGCTGACCCTGGCCGGGATCGCCGCCGTGGCCGGCCTCAGCGTGCCGC
ACCTGACCAGCCTGTTCCGGCGGACCATGGGCCAGTCGGTCCACGCCTATGTCATGGAGCGACGGGTGTGCCGGGCCAGG
GACCTGCTGCTGGCCGGCCGCACGAGCATCGCCGAGGTCGCCATCGAGAGCGGCTTCGCCCACCAGAGCCACCTCGCCCG
CTGGACGCGCCGGCTGCTGGGCGTGACGCCGGGCGAACTGCTCAGGTCTTGA

Upstream 100 bases:

>100_bases
GAGCACGTTCCGATGACGGCGTCGCTCCCGGGCGGCGCCGGAGCCTGCTGGGCGTTTGACAGCGCGCGGGCGAAGGCGTG
GTGTCGGGGGCGAGGCCTCG

Downstream 100 bases:

>100_bases
TCTTGTAGCCGACGCTGAACAGCCGCAGGCAGGCGAAGCCGAGGCCGAAGACCAGCGCGGCGGTCATGACCGCGCCGACC
CAGAGGTTGCTCTCGGCCTG

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein; AraC Family Transcription Regulator; AraC Family Regulatory Protein; AraC-Family Transcriptional Regulator; Transcriptional Regulatory Protein; Transcription Regulator; AraC Family Transcription Regulator Protein; Transcriptional Regulator AraC-Type; Regulator; AraC/XylS Family Transcriptional Regulator; Transcription Regulator AraC Family; HTH-Type Transcriptional Regulator ChbR; Transcriptional Regulator AraC-Family; AraC Type Helix-Turn-Helix- Domain-Containing Protein; Helix-Turn-Helix AraC Type; AraC-Type Trancriptional Regulator; AraC Family Helix-Turn-Helix Transcriptional Regulator; AraC Family Regulatory Helix-Turn-Helix; Xyls/AraC-Type Transcriptional Activator

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTYVHRFRDTPHPHLAFGPTRAWEGLSAVRVRASPGRHPGAASGEHRLLFYLTSDVRADCACEGVGGGRVLAAADFDLVP
AGASGVWEDHGPVDFISVRLAPAVVAEAAEALGVPEARADLAPRLGARDPLVSRLVFALAAEVEAPEGASRLYADSLALA
LATRLLQEAPEARGGRQTLSKPQLRRIVEHVEANLEGELTLAGIAAVAGLSVPHLTSLFRRTMGQSVHAYVMERRVCRAR
DLLLAGRTSIAEVAIESGFAHQSHLARWTRRLLGVTPGELLRS

Sequences:

>Translated_283_residues
MTYVHRFRDTPHPHLAFGPTRAWEGLSAVRVRASPGRHPGAASGEHRLLFYLTSDVRADCACEGVGGGRVLAAADFDLVP
AGASGVWEDHGPVDFISVRLAPAVVAEAAEALGVPEARADLAPRLGARDPLVSRLVFALAAEVEAPEGASRLYADSLALA
LATRLLQEAPEARGGRQTLSKPQLRRIVEHVEANLEGELTLAGIAAVAGLSVPHLTSLFRRTMGQSVHAYVMERRVCRAR
DLLLAGRTSIAEVAIESGFAHQSHLARWTRRLLGVTPGELLRS
>Mature_282_residues
TYVHRFRDTPHPHLAFGPTRAWEGLSAVRVRASPGRHPGAASGEHRLLFYLTSDVRADCACEGVGGGRVLAAADFDLVPA
GASGVWEDHGPVDFISVRLAPAVVAEAAEALGVPEARADLAPRLGARDPLVSRLVFALAAEVEAPEGASRLYADSLALAL
ATRLLQEAPEARGGRQTLSKPQLRRIVEHVEANLEGELTLAGIAAVAGLSVPHLTSLFRRTMGQSVHAYVMERRVCRARD
LLLAGRTSIAEVAIESGFAHQSHLARWTRRLLGVTPGELLRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30253; Mature: 30122

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYVHRFRDTPHPHLAFGPTRAWEGLSAVRVRASPGRHPGAASGEHRLLFYLTSDVRADC
CCCCCCCCCCCCCCEECCCCHHHCCCHHEEEECCCCCCCCCCCCCCEEEEEEECCCCCCC
ACEGVGGGRVLAAADFDLVPAGASGVWEDHGPVDFISVRLAPAVVAEAAEALGVPEARAD
EECCCCCCEEEEEECCCEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHHH
LAPRLGARDPLVSRLVFALAAEVEAPEGASRLYADSLALALATRLLQEAPEARGGRQTLS
HCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHCC
KPQLRRIVEHVEANLEGELTLAGIAAVAGLSVPHLTSLFRRTMGQSVHAYVMERRVCRAR
CHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
DLLLAGRTSIAEVAIESGFAHQSHLARWTRRLLGVTPGELLRS
HHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure 
TYVHRFRDTPHPHLAFGPTRAWEGLSAVRVRASPGRHPGAASGEHRLLFYLTSDVRADC
CCCCCCCCCCCCCEECCCCHHHCCCHHEEEECCCCCCCCCCCCCCEEEEEEECCCCCCC
ACEGVGGGRVLAAADFDLVPAGASGVWEDHGPVDFISVRLAPAVVAEAAEALGVPEARAD
EECCCCCCEEEEEECCCEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHHH
LAPRLGARDPLVSRLVFALAAEVEAPEGASRLYADSLALALATRLLQEAPEARGGRQTLS
HCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHCC
KPQLRRIVEHVEANLEGELTLAGIAAVAGLSVPHLTSLFRRTMGQSVHAYVMERRVCRAR
CHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
DLLLAGRTSIAEVAIESGFAHQSHLARWTRRLLGVTPGELLRS
HHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA