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The map label for this gene is spoU [H]

Identifier: 197106334

GI number: 197106334

Start: 3286173

End: 3286637

Strand: Direct

Name: spoU [H]

Synonym: PHZ_c2873

Alternate gene names: 197106334

Gene position: 3286173-3286637 (Clockwise)

Preceding gene: 197106329

Following gene: 197106335

Centisome position: 82.23

GC content: 73.55

Gene sequence:

>465_bases
ATGCGTTTGGCCCTTTTTCAACCGGACATTCCGCAAAACCTCGGCGCGGCGGTGCGGCTGGCGGCCTGCCTGGGCGTCCC
GCTGGACGTGATCGAGCCCTGCGGCTTCCCCCTGAGCGACCGCGCCGTCGCCCGCGCGGCGATGGATTACGCGGCCCGCG
CCGACGTCGTCCGGCACGCCGGATGGGGCGACTTCCGGGCCGCGTCCCAGGGGCGGCTGGTGCTGTTCACCACCCGGGCC
GCCCAGCCGTTCCAGGACTTCGACTTCCGGCCGGGCGACGTCCTGCTGTTCGGGCGCGAGAGCGCCGGCGTCCCAGACGA
GGTGCACGCGGCCGCCGACGCGCGCCTCTTCATACCGCTGGTCGCCGGTGCAAGGTCGCTGAACGTCGTCACCGCCGCGG
CCATGGCCCTTTCCGAAGCGCTCCGGCAGACCGGCGGCTTCCCAACCCCCGCCGCGGCGGAGTAG

Upstream 100 bases:

>100_bases
GGAAGGACATGCTCCACGGAAGGCTGTCGAACTTCGCGAACGCCTGCCCGTGATTCTCTGTCTTTGCGCCCCGGCCTAGT
CCCGTGGCGGGTGCCTTAGA

Downstream 100 bases:

>100_bases
CAGAGCGGCCATGTCCGAGCCCGCCCCCACCCTGCCGCCCGAGATCCTCGCCCGCCGCGACCGCGCCAAGGCCTGGTTCG
AGGATCTGCAGGCCCGCATC

Product: rRNA methylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MRLALFQPDIPQNLGAAVRLAACLGVPLDVIEPCGFPLSDRAVARAAMDYAARADVVRHAGWGDFRAASQGRLVLFTTRA
AQPFQDFDFRPGDVLLFGRESAGVPDEVHAAADARLFIPLVAGARSLNVVTAAAMALSEALRQTGGFPTPAAAE

Sequences:

>Translated_154_residues
MRLALFQPDIPQNLGAAVRLAACLGVPLDVIEPCGFPLSDRAVARAAMDYAARADVVRHAGWGDFRAASQGRLVLFTTRA
AQPFQDFDFRPGDVLLFGRESAGVPDEVHAAADARLFIPLVAGARSLNVVTAAAMALSEALRQTGGFPTPAAAE
>Mature_154_residues
MRLALFQPDIPQNLGAAVRLAACLGVPLDVIEPCGFPLSDRAVARAAMDYAARADVVRHAGWGDFRAASQGRLVLFTTRA
AQPFQDFDFRPGDVLLFGRESAGVPDEVHAAADARLFIPLVAGARSLNVVTAAAMALSEALRQTGGFPTPAAAE

Specific function: Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide [H]

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family. TrmL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790034, Length=148, Percent_Identity=35.1351351351351, Blast_Score=96, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016914
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 16216; Mature: 16216

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLALFQPDIPQNLGAAVRLAACLGVPLDVIEPCGFPLSDRAVARAAMDYAARADVVRHA
CEEECCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GWGDFRAASQGRLVLFTTRAAQPFQDFDFRPGDVLLFGRESAGVPDEVHAAADARLFIPL
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEE
VAGARSLNVVTAAAMALSEALRQTGGFPTPAAAE
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRLALFQPDIPQNLGAAVRLAACLGVPLDVIEPCGFPLSDRAVARAAMDYAARADVVRHA
CEEECCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GWGDFRAASQGRLVLFTTRAAQPFQDFDFRPGDVLLFGRESAGVPDEVHAAADARLFIPL
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEE
VAGARSLNVVTAAAMALSEALRQTGGFPTPAAAE
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA