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The map label for this gene is petR [H]

Identifier: 197106313

GI number: 197106313

Start: 3266492

End: 3267199

Strand: Direct

Name: petR [H]

Synonym: PHZ_c2852

Alternate gene names: 197106313

Gene position: 3266492-3267199 (Clockwise)

Preceding gene: 197106312

Following gene: 197106314

Centisome position: 81.74

GC content: 75.71

Gene sequence:

>708_bases
ATGAGCCTGGGCGAGGCCGCCGCGCGCGGGCGCCACCTGCTGGTGGTGGACGACGACGACCGCATCCGCGACCTGCTCAA
GCAGTACCTCAGCCGCGCCGGATTCCGGGTCACCGCCGCGGCCGGCGGCGCGCCGGCCCGCCGGCTGCTGTCCACCCTCG
ACTTCGACCTCGCGGTCTTCGACGTGATGATGCCGGGGGAGGACGGCTTCTCGCTAACCCGCTGGCTGCGCGAGCAGCGC
GGCGCGGCCGGCAAGACCCCCGTCCTGATGCTCACCGCCCGCGCCGAGGCCGGCGACCGCATCGAGGGCCTGCGCACCGG
CGCCGACGACTACCTGCCCAAGCCCTTCGAGCCGGAGGAGCTGCTGCTGCGCATCGAGGCCATCCTGCGCCGCGCGCAGG
ACCGGCCCACGCCCGGCGGCGTGCTTTCGCTCGGCCGCTGCGCCTTCGATCCCGAGCGCGGCGAACTCACCTGCGACGGC
GAGCCGGTGCGCCTCACCGAGGCCGAGGTCGCCCTGCTGCGCCAGCTCGCCCGCACCCCGCACGAGGCCGTCGACCGGCT
GGAGCTGGCCCGCGGCTCGGTCGATCCCTCCGGCCGCGCCGTGGACGTGCAGGTGACCCGCCTGCGCCGCAAGATCGAGG
ACGACCCCAAGGCCCCGCGCTACCTCCAGACCGTCCGCGGCGTGGGCTACCGCCTGGCCCCCGACTGA

Upstream 100 bases:

>100_bases
ACCGCGCCGGGGGCCTCGACGGCGTGGCCGGCGCCCGCCGCATCCTGGCCGCCCTCGCCGGCGGCCGCACCCGCAGCCCC
AACACCGGCGGAGGCCCCGC

Downstream 100 bases:

>100_bases
TGCGCCCGCAGACCCCGCTGCGCGCCTTCGGCCGCTGGCTGAAGAAGCGGCTGCCGACCACGCTGTTCGGCCGCAGCCTG
CTGATCATCGTCCTGCCGGT

Product: response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSLGEAAARGRHLLVVDDDDRIRDLLKQYLSRAGFRVTAAAGGAPARRLLSTLDFDLAVFDVMMPGEDGFSLTRWLREQR
GAAGKTPVLMLTARAEAGDRIEGLRTGADDYLPKPFEPEELLLRIEAILRRAQDRPTPGGVLSLGRCAFDPERGELTCDG
EPVRLTEAEVALLRQLARTPHEAVDRLELARGSVDPSGRAVDVQVTRLRRKIEDDPKAPRYLQTVRGVGYRLAPD

Sequences:

>Translated_235_residues
MSLGEAAARGRHLLVVDDDDRIRDLLKQYLSRAGFRVTAAAGGAPARRLLSTLDFDLAVFDVMMPGEDGFSLTRWLREQR
GAAGKTPVLMLTARAEAGDRIEGLRTGADDYLPKPFEPEELLLRIEAILRRAQDRPTPGGVLSLGRCAFDPERGELTCDG
EPVRLTEAEVALLRQLARTPHEAVDRLELARGSVDPSGRAVDVQVTRLRRKIEDDPKAPRYLQTVRGVGYRLAPD
>Mature_234_residues
SLGEAAARGRHLLVVDDDDRIRDLLKQYLSRAGFRVTAAAGGAPARRLLSTLDFDLAVFDVMMPGEDGFSLTRWLREQRG
AAGKTPVLMLTARAEAGDRIEGLRTGADDYLPKPFEPEELLLRIEAILRRAQDRPTPGGVLSLGRCAFDPERGELTCDGE
PVRLTEAEVALLRQLARTPHEAVDRLELARGSVDPSGRAVDVQVTRLRRKIEDDPKAPRYLQTVRGVGYRLAPD

Specific function: Necessary for photosynthetic and respiratory growth. Probable promoter-specific protein mediating the interaction between DNA and RNA polymerase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=233, Percent_Identity=45.4935622317597, Blast_Score=187, Evalue=8e-49,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=38.5964912280702, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1790863, Length=235, Percent_Identity=32.7659574468085, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1787229, Length=236, Percent_Identity=35.5932203389831, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1786784, Length=228, Percent_Identity=36.8421052631579, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789402, Length=225, Percent_Identity=36.4444444444444, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI87082012, Length=225, Percent_Identity=34.2222222222222, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1786599, Length=228, Percent_Identity=34.6491228070175, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1788394, Length=227, Percent_Identity=31.7180616740088, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787375, Length=224, Percent_Identity=34.8214285714286, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=33.0357142857143, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1790552, Length=227, Percent_Identity=32.15859030837, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=31.7796610169492, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1786911, Length=225, Percent_Identity=31.1111111111111, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788550, Length=118, Percent_Identity=36.4406779661017, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790299, Length=129, Percent_Identity=31.7829457364341, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788713, Length=124, Percent_Identity=37.0967741935484, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787487, Length=108, Percent_Identity=34.2592592592593, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790437, Length=163, Percent_Identity=31.9018404907975, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25935; Mature: 25804

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLGEAAARGRHLLVVDDDDRIRDLLKQYLSRAGFRVTAAAGGAPARRLLSTLDFDLAVF
CCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCHHHHHH
DVMMPGEDGFSLTRWLREQRGAAGKTPVLMLTARAEAGDRIEGLRTGADDYLPKPFEPEE
EEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHCCCHHCCCCCCCHHH
LLLRIEAILRRAQDRPTPGGVLSLGRCAFDPERGELTCDGEPVRLTEAEVALLRQLARTP
HHHHHHHHHHHHHCCCCCCCCEECCHHCCCCCCCCEEECCCCEEEHHHHHHHHHHHHCCH
HEAVDRLELARGSVDPSGRAVDVQVTRLRRKIEDDPKAPRYLQTVRGVGYRLAPD
HHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCEEECCC
>Mature Secondary Structure 
SLGEAAARGRHLLVVDDDDRIRDLLKQYLSRAGFRVTAAAGGAPARRLLSTLDFDLAVF
CCCCHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCHHHHHH
DVMMPGEDGFSLTRWLREQRGAAGKTPVLMLTARAEAGDRIEGLRTGADDYLPKPFEPEE
EEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHCCCHHCCCCCCCHHH
LLLRIEAILRRAQDRPTPGGVLSLGRCAFDPERGELTCDGEPVRLTEAEVALLRQLARTP
HHHHHHHHHHHHHCCCCCCCCEECCHHCCCCCCCCEEECCCCEEEHHHHHHHHHHHHCCH
HEAVDRLELARGSVDPSGRAVDVQVTRLRRKIEDDPKAPRYLQTVRGVGYRLAPD
HHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1323023 [H]