| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197106210
Identifier: 197106210
GI number: 197106210
Start: 3153932
End: 3154513
Strand: Direct
Name: 197106210
Synonym: PHZ_c2749
Alternate gene names: NA
Gene position: 3153932-3154513 (Clockwise)
Preceding gene: 197106208
Following gene: 197106211
Centisome position: 78.92
GC content: 75.26
Gene sequence:
>582_bases GTGGCCCGGAACTACACCCTGAAACGGCGCGCGGAGCAGCAGGCGCAGACCCGGCGCCGGCTCGTCGAGGCCGCGGTGGA CCTGCACGGCGAGCTTGGGCCGGCGCGGACCAGCCTGAGCATGGTGGCCGAACGGGCGGGCGTTCAGCGCAACACGCTCT ACGCCCACTTCCCAGACGAGCGCAGCCTGCTGGTGGCCTGTTCGGCCCTGTCGCTGGAGCGCGACCCGCCCCCCGACGCC TCGGGCTGGAGCGACATCGCCGACGCCGGCGAGCGGCTGCGGCAGGGGCTGGGCGAGGTCTACGGCTGGTACGGCCGCAC CGCCCAGTTGATCGGCTGCGTGCTGCGCGACGCCGAGCACCACGATCTGACGCGGGAGATCACCGAACTGCGCCTGGGGC CGGTGATCGCCGGTTGGCGCGAGGTGCTGGGGGCCGATCTGGCGGGACCCCGGAGGGCCGTGCTCGAGCTGGCGCTGAGC TTCCATGGCTGGCGCGCGCTCGCCCGCGAGGGCGGGTTGGACGACCCCGCCGCGGCCGCCGCGGCCATGGCGCGGGCGAT CGAGGCGCAGCCCGCAGGCTAG
Upstream 100 bases:
>100_bases CTCCTGCTGGACCGGGCGAGATTTTCACACTACATAACCGTGTAATGAAAAACCGCGGCGAGGTCAATTTCGCTGCACAG TCCAGTACGGCGAAACAGGC
Downstream 100 bases:
>100_bases GAAGGCGGCCGCCGCGGCCGGTTTCACCTGCAACTTTTTTGCGGCGGAACGCCCTATTGCGCCGCCATCCGCAATGACTT AGGTCGCCATCTCCGGTTCC
Product: transcriptional regulator, TetR family
Products: NA
Alternate protein names: TetR Family Transcriptional Regulator
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MARNYTLKRRAEQQAQTRRRLVEAAVDLHGELGPARTSLSMVAERAGVQRNTLYAHFPDERSLLVACSALSLERDPPPDA SGWSDIADAGERLRQGLGEVYGWYGRTAQLIGCVLRDAEHHDLTREITELRLGPVIAGWREVLGADLAGPRRAVLELALS FHGWRALAREGGLDDPAAAAAAMARAIEAQPAG
Sequences:
>Translated_193_residues MARNYTLKRRAEQQAQTRRRLVEAAVDLHGELGPARTSLSMVAERAGVQRNTLYAHFPDERSLLVACSALSLERDPPPDA SGWSDIADAGERLRQGLGEVYGWYGRTAQLIGCVLRDAEHHDLTREITELRLGPVIAGWREVLGADLAGPRRAVLELALS FHGWRALAREGGLDDPAAAAAAMARAIEAQPAG >Mature_192_residues ARNYTLKRRAEQQAQTRRRLVEAAVDLHGELGPARTSLSMVAERAGVQRNTLYAHFPDERSLLVACSALSLERDPPPDAS GWSDIADAGERLRQGLGEVYGWYGRTAQLIGCVLRDAEHHDLTREITELRLGPVIAGWREVLGADLAGPRRAVLELALSF HGWRALAREGGLDDPAAAAAAMARAIEAQPAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20968; Mature: 20837
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARNYTLKRRAEQQAQTRRRLVEAAVDLHGELGPARTSLSMVAERAGVQRNTLYAHFPDE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCC RSLLVACSALSLERDPPPDASGWSDIADAGERLRQGLGEVYGWYGRTAQLIGCVLRDAEH CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHH HDLTREITELRLGPVIAGWREVLGADLAGPRRAVLELALSFHGWRALAREGGLDDPAAAA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH AAMARAIEAQPAG HHHHHHHHCCCCC >Mature Secondary Structure ARNYTLKRRAEQQAQTRRRLVEAAVDLHGELGPARTSLSMVAERAGVQRNTLYAHFPDE CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCC RSLLVACSALSLERDPPPDASGWSDIADAGERLRQGLGEVYGWYGRTAQLIGCVLRDAEH CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHH HDLTREITELRLGPVIAGWREVLGADLAGPRRAVLELALSFHGWRALAREGGLDDPAAAA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH AAMARAIEAQPAG HHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA