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The map label for this gene is pupA [H]

Identifier: 197106207

GI number: 197106207

Start: 3148736

End: 3151225

Strand: Direct

Name: pupA [H]

Synonym: PHZ_c2746

Alternate gene names: 197106207

Gene position: 3148736-3151225 (Clockwise)

Preceding gene: 197106206

Following gene: 197106208

Centisome position: 78.79

GC content: 67.23

Gene sequence:

>2490_bases
ATGTCGCAATCGATCGCCCCGCGGGGCGTGCTCGCCGCCGGCGTCTCCGCCCTGGCGCTCGCCGCGCTGGCCCAGCCCGC
GCTCGCCCAGGACGCCGCGCCGCCCGCGGCCCAAGGCGCCCTGCTGGAAGAGCTGGTCATCACCGCCGAGAAGCGCGAGC
AGTCGCTGCAGGACGTGCCGGTGGCCGTCTCGGCCTTCACCTCGGAGAAGCGCGACGTCGCCGGCATCACCGGCATCCAG
GACTTCGTGAACTTCACGCCCGGCATGAACTACTCGGGCACCGACCGGGTCAGCCTGCGCGGCGCCGGCCGCAACACCTT
CTACATCGGCAACGACCCGGGCGTGGCGTCCTACTCGGACGGCTTCTACTCGGCCTCCTCGTCCGAGCTGTTCAAGACCC
CGCTGTTCATCGAGCGCACCGAGATCCTGCGCGGTCCGCAGGGCACCCTGTACGGCCGCAACGCCATCGGCGGCGCCATC
AACCAGGTCTCCAAGCGCCCGTCGCAGGACTTCGGCGGCGAGATCCGCGCCGGCTACGGCAACTACGACCGCTACCGCAT
CGAGGGCGTGGTCTCCCTGCCCGTGGCCGACAACCTGCGCTTCAAGATCGGCGCGAGCCACGAGGACCAGAGCAAGGGCT
TCATCAAGAACATCGGCCCGGCCAACGACGGCGCCACCATCAAGCGCAGCTACTACGAGGCGCAGATGGAGTACGAGCCG
ACCGACCGGCTCGAGATCTACGTCCGCTACAACCGCTCGGTCTGGGACGACACCACCGGCGTGGGCGACCGCCTCGCCAA
CCTGACGACGCCCTACGACACCACCCGCGTGTTCGGCCCGATCGGCCAGCTTCAGGTCAATCCGCAGTTCGGCTACGCGA
CCCCGAACCCGGGCGTCGCCGATCCGTACGTGATGAACACCAACACGGACGGCTACGGCCAGCTGCGCGGCAACCACGTC
GCCACGACCACCATCACCTACGACCTGGGTTTCGCCGACCTGAAGTACATCGGCGGCTTCCAGAAGTATAATTACCAGAC
GGGCGGGGACTACGATAACACCAGCCGGACCGCGCCGATCACCGGCATCCTGGCGGTCCCGTACTTCCCGACCCAGACCA
CCGACTTCGACGAGCACAAGTGGTACTACTCGAACGAGGTGAACCTGACCTCGAACGGGGACGGGCCATTCCGCTGGATT
CTCGGCGCCTACCAGTACCATGAGAAGTACCGTCAGCGGGTCCAGCTGGCCAACCCGAACCAGGCCCAGCTCGCCCAGCC
GTTCACCCTCGCGGGGACGCTGGCCGCGCCGAACCCGAACCGCAACTTCGTCGACAGCCAGGCGGCGCTGAAGTCGAAGG
CCTGGGCCGTGTTCGGCCAGGGCACCTACGAGATCAACGACCAGTTCGCCGTGACGGCGGGCCTGCGCTACACCAAGGAC
AAGAAGTCCGGGAACGAGTTCCAGCGGCTGGTCATCCAGTCGCCGACCATCCTGGGCGGCGCGGTCGCGGTGGACGTCTC
CAGCGACATGGATCCGACCACCCCCGGCGTGCAGAACTACCGCACCCTGTCCGACAGCTGGGACGCGGTGACCGGCGTCC
TGAACCTGGACTGGACGCCTGACGCTGACACCCTCGGCTACGCCAAGTACAGCCGCGGCTACAAGTCGGGCGGCTTCCTG
CTGGGCACCCTGGCGCCCGATCCGGAAGCCGACCAGGAGCAGGTCGACGCCTTCGAAGTCGGCCTGAAGAAGACCTTCGC
CGGCCGGCTGCAGGTGAACGCCGCAGCGTTCTACAACGACTACAAGGACCTGCAGCTGAACCTGTCGCAGCTCAACGCGG
CGGGCACCTCGGCCTCCAACAACTTCGTCAACGTCGACGCCGAGGCCTACGGTCTGGAGCTGGAGGCGATCTGGCGGCCG
ATCGAGAACCTCGACCTGTCGGCGAGCTACGGCTACCTGCACACCGAGATCACGAGCGGCTGCTGCTTCTACGACCCGGC
GGATCCGGGCGCCCTGGACCCGCGGGCGACGCCGGCGGGCGGCACGGCCAACTCCAACGGCGCGCCGCTGGTGTTCCAGA
CGCTGGAAGGCTCGCGCATCTACCAGTCGCCGAAGCACAAGTTCGCCGGCAACGCGAACTACACCTTCGATTTCGACGCG
GGCAGCCTGATCGTGTCGGCCACCTACACCTGGACCGACAAGACCTACTACCAGCCGTTCAAGAGCGAGGCGAACCGGGT
CAAGGCGTACGACGTCACCGACCTGCGCGTGCTGTGGAACGACATCGACGACCGTTACACCGTCATCGGCTTCGTGAAGA
ACGTCTTCGACAACACGGGCTTCACGTCGAACGGCTCGACGACGCCCACAGCGATCTACGACAGCCCGCCGAACCCGCAG
GCCGGTCTCCTGACGCAGACGCGCACGGCGATCACCCGCGGCCTCATCCAGCCCCGCACCTACGGCGTGGAGCTGCAGTA
CCGCTTCTAG

Upstream 100 bases:

>100_bases
CCCCCGAGGGTCCCCGCCCCGGGCGCCTCCCCGCGCCCGCCCACGAGAATCGCAAACGAAGAGGCCGGCGGCGCGACCGT
CCGAGCCCGGGAGGACATTC

Downstream 100 bases:

>100_bases
AGTTGGCGCGTTTCCTCCCATAAGCGCCTATTCGGGCGGCGGGCCTCGTCCCGCCGCCCTTTTTTTTGGCCCGGCGCTCC
GGACGAGCCGGGGCCATGAC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 829; Mature: 828

Protein sequence:

>829_residues
MSQSIAPRGVLAAGVSALALAALAQPALAQDAAPPAAQGALLEELVITAEKREQSLQDVPVAVSAFTSEKRDVAGITGIQ
DFVNFTPGMNYSGTDRVSLRGAGRNTFYIGNDPGVASYSDGFYSASSSELFKTPLFIERTEILRGPQGTLYGRNAIGGAI
NQVSKRPSQDFGGEIRAGYGNYDRYRIEGVVSLPVADNLRFKIGASHEDQSKGFIKNIGPANDGATIKRSYYEAQMEYEP
TDRLEIYVRYNRSVWDDTTGVGDRLANLTTPYDTTRVFGPIGQLQVNPQFGYATPNPGVADPYVMNTNTDGYGQLRGNHV
ATTTITYDLGFADLKYIGGFQKYNYQTGGDYDNTSRTAPITGILAVPYFPTQTTDFDEHKWYYSNEVNLTSNGDGPFRWI
LGAYQYHEKYRQRVQLANPNQAQLAQPFTLAGTLAAPNPNRNFVDSQAALKSKAWAVFGQGTYEINDQFAVTAGLRYTKD
KKSGNEFQRLVIQSPTILGGAVAVDVSSDMDPTTPGVQNYRTLSDSWDAVTGVLNLDWTPDADTLGYAKYSRGYKSGGFL
LGTLAPDPEADQEQVDAFEVGLKKTFAGRLQVNAAAFYNDYKDLQLNLSQLNAAGTSASNNFVNVDAEAYGLELEAIWRP
IENLDLSASYGYLHTEITSGCCFYDPADPGALDPRATPAGGTANSNGAPLVFQTLEGSRIYQSPKHKFAGNANYTFDFDA
GSLIVSATYTWTDKTYYQPFKSEANRVKAYDVTDLRVLWNDIDDRYTVIGFVKNVFDNTGFTSNGSTTPTAIYDSPPNPQ
AGLLTQTRTAITRGLIQPRTYGVELQYRF

Sequences:

>Translated_829_residues
MSQSIAPRGVLAAGVSALALAALAQPALAQDAAPPAAQGALLEELVITAEKREQSLQDVPVAVSAFTSEKRDVAGITGIQ
DFVNFTPGMNYSGTDRVSLRGAGRNTFYIGNDPGVASYSDGFYSASSSELFKTPLFIERTEILRGPQGTLYGRNAIGGAI
NQVSKRPSQDFGGEIRAGYGNYDRYRIEGVVSLPVADNLRFKIGASHEDQSKGFIKNIGPANDGATIKRSYYEAQMEYEP
TDRLEIYVRYNRSVWDDTTGVGDRLANLTTPYDTTRVFGPIGQLQVNPQFGYATPNPGVADPYVMNTNTDGYGQLRGNHV
ATTTITYDLGFADLKYIGGFQKYNYQTGGDYDNTSRTAPITGILAVPYFPTQTTDFDEHKWYYSNEVNLTSNGDGPFRWI
LGAYQYHEKYRQRVQLANPNQAQLAQPFTLAGTLAAPNPNRNFVDSQAALKSKAWAVFGQGTYEINDQFAVTAGLRYTKD
KKSGNEFQRLVIQSPTILGGAVAVDVSSDMDPTTPGVQNYRTLSDSWDAVTGVLNLDWTPDADTLGYAKYSRGYKSGGFL
LGTLAPDPEADQEQVDAFEVGLKKTFAGRLQVNAAAFYNDYKDLQLNLSQLNAAGTSASNNFVNVDAEAYGLELEAIWRP
IENLDLSASYGYLHTEITSGCCFYDPADPGALDPRATPAGGTANSNGAPLVFQTLEGSRIYQSPKHKFAGNANYTFDFDA
GSLIVSATYTWTDKTYYQPFKSEANRVKAYDVTDLRVLWNDIDDRYTVIGFVKNVFDNTGFTSNGSTTPTAIYDSPPNPQ
AGLLTQTRTAITRGLIQPRTYGVELQYRF
>Mature_828_residues
SQSIAPRGVLAAGVSALALAALAQPALAQDAAPPAAQGALLEELVITAEKREQSLQDVPVAVSAFTSEKRDVAGITGIQD
FVNFTPGMNYSGTDRVSLRGAGRNTFYIGNDPGVASYSDGFYSASSSELFKTPLFIERTEILRGPQGTLYGRNAIGGAIN
QVSKRPSQDFGGEIRAGYGNYDRYRIEGVVSLPVADNLRFKIGASHEDQSKGFIKNIGPANDGATIKRSYYEAQMEYEPT
DRLEIYVRYNRSVWDDTTGVGDRLANLTTPYDTTRVFGPIGQLQVNPQFGYATPNPGVADPYVMNTNTDGYGQLRGNHVA
TTTITYDLGFADLKYIGGFQKYNYQTGGDYDNTSRTAPITGILAVPYFPTQTTDFDEHKWYYSNEVNLTSNGDGPFRWIL
GAYQYHEKYRQRVQLANPNQAQLAQPFTLAGTLAAPNPNRNFVDSQAALKSKAWAVFGQGTYEINDQFAVTAGLRYTKDK
KSGNEFQRLVIQSPTILGGAVAVDVSSDMDPTTPGVQNYRTLSDSWDAVTGVLNLDWTPDADTLGYAKYSRGYKSGGFLL
GTLAPDPEADQEQVDAFEVGLKKTFAGRLQVNAAAFYNDYKDLQLNLSQLNAAGTSASNNFVNVDAEAYGLELEAIWRPI
ENLDLSASYGYLHTEITSGCCFYDPADPGALDPRATPAGGTANSNGAPLVFQTLEGSRIYQSPKHKFAGNANYTFDFDAG
SLIVSATYTWTDKTYYQPFKSEANRVKAYDVTDLRVLWNDIDDRYTVIGFVKNVFDNTGFTSNGSTTPTAIYDSPPNPQA
GLLTQTRTAITRGLIQPRTYGVELQYRF

Specific function: Specific receptor for the siderophore ferric pseudobactin 358 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1788478, Length=164, Percent_Identity=29.2682926829268, Blast_Score=74, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR011662
- InterPro:   IPR000531
- InterPro:   IPR010916
- InterPro:   IPR010917
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 90548; Mature: 90417

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSIAPRGVLAAGVSALALAALAQPALAQDAAPPAAQGALLEELVITAEKREQSLQDVP
CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
VAVSAFTSEKRDVAGITGIQDFVNFTPGMNYSGTDRVSLRGAGRNTFYIGNDPGVASYSD
EEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCC
GFYSASSSELFKTPLFIERTEILRGPQGTLYGRNAIGGAINQVSKRPSQDFGGEIRAGYG
CCCCCCCCHHHCCCCEEEHHHHHCCCCCCEECCCHHHHHHHHHHCCCCHHCCCCEEECCC
NYDRYRIEGVVSLPVADNLRFKIGASHEDQSKGFIKNIGPANDGATIKRSYYEAQMEYEP
CCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCEEEEEEEEEEECCCC
TDRLEIYVRYNRSVWDDTTGVGDRLANLTTPYDTTRVFGPIGQLQVNPQFGYATPNPGVA
CCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCHHHCCCCCEEEECCCCCCCCCCCCCC
DPYVMNTNTDGYGQLRGNHVATTTITYDLGFADLKYIGGFQKYNYQTGGDYDNTSRTAPI
CCEEEECCCCCCEEECCCEEEEEEEEEECCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCE
TGILAVPYFPTQTTDFDEHKWYYSNEVNLTSNGDGPFRWILGAYQYHEKYRQRVQLANPN
EEEEEECCCCCCCCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCC
QAQLAQPFTLAGTLAAPNPNRNFVDSQAALKSKAWAVFGQGTYEINDQFAVTAGLRYTKD
HHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHCCEEEEECCEEEECCCEEEEECCEECCC
KKSGNEFQRLVIQSPTILGGAVAVDVSSDMDPTTPGVQNYRTLSDSWDAVTGVLNLDWTP
CCCCCHHHHHEECCCCEECCEEEEEECCCCCCCCCCHHHCEECCCCCCEEEEEEEECCCC
DADTLGYAKYSRGYKSGGFLLGTLAPDPEADQEQVDAFEVGLKKTFAGRLQVNAAAFYND
CCCCCCHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHCC
YKDLQLNLSQLNAAGTSASNNFVNVDAEAYGLELEAIWRPIENLDLSASYGYLHTEITSG
CCCEEEEHHHHCCCCCCCCCCEEEECHHHHCEEHHHHHCCHHCCCCCCCCCEEEEECCCC
CCFYDPADPGALDPRATPAGGTANSNGAPLVFQTLEGSRIYQSPKHKFAGNANYTFDFDA
EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCEEEEECC
GSLIVSATYTWTDKTYYQPFKSEANRVKAYDVTDLRVLWNDIDDRYTVIGFVKNVFDNTG
CCEEEEEEEEECCCHHCCCHHHCCCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHCCCC
FTSNGSTTPTAIYDSPPNPQAGLLTQTRTAITRGLIQPRTYGVELQYRF
CCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEC
>Mature Secondary Structure 
SQSIAPRGVLAAGVSALALAALAQPALAQDAAPPAAQGALLEELVITAEKREQSLQDVP
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
VAVSAFTSEKRDVAGITGIQDFVNFTPGMNYSGTDRVSLRGAGRNTFYIGNDPGVASYSD
EEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCC
GFYSASSSELFKTPLFIERTEILRGPQGTLYGRNAIGGAINQVSKRPSQDFGGEIRAGYG
CCCCCCCCHHHCCCCEEEHHHHHCCCCCCEECCCHHHHHHHHHHCCCCHHCCCCEEECCC
NYDRYRIEGVVSLPVADNLRFKIGASHEDQSKGFIKNIGPANDGATIKRSYYEAQMEYEP
CCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCEEEEEEEEEEECCCC
TDRLEIYVRYNRSVWDDTTGVGDRLANLTTPYDTTRVFGPIGQLQVNPQFGYATPNPGVA
CCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCHHHCCCCCEEEECCCCCCCCCCCCCC
DPYVMNTNTDGYGQLRGNHVATTTITYDLGFADLKYIGGFQKYNYQTGGDYDNTSRTAPI
CCEEEECCCCCCEEECCCEEEEEEEEEECCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCE
TGILAVPYFPTQTTDFDEHKWYYSNEVNLTSNGDGPFRWILGAYQYHEKYRQRVQLANPN
EEEEEECCCCCCCCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCC
QAQLAQPFTLAGTLAAPNPNRNFVDSQAALKSKAWAVFGQGTYEINDQFAVTAGLRYTKD
HHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHCCEEEEECCEEEECCCEEEEECCEECCC
KKSGNEFQRLVIQSPTILGGAVAVDVSSDMDPTTPGVQNYRTLSDSWDAVTGVLNLDWTP
CCCCCHHHHHEECCCCEECCEEEEEECCCCCCCCCCHHHCEECCCCCCEEEEEEEECCCC
DADTLGYAKYSRGYKSGGFLLGTLAPDPEADQEQVDAFEVGLKKTFAGRLQVNAAAFYND
CCCCCCHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHCC
YKDLQLNLSQLNAAGTSASNNFVNVDAEAYGLELEAIWRPIENLDLSASYGYLHTEITSG
CCCEEEEHHHHCCCCCCCCCCEEEECHHHHCEEHHHHHCCHHCCCCCCCCCEEEEECCCC
CCFYDPADPGALDPRATPAGGTANSNGAPLVFQTLEGSRIYQSPKHKFAGNANYTFDFDA
EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCEEEEECC
GSLIVSATYTWTDKTYYQPFKSEANRVKAYDVTDLRVLWNDIDDRYTVIGFVKNVFDNTG
CCEEEEEEEEECCCHHCCCHHHCCCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHCCCC
FTSNGSTTPTAIYDSPPNPQAGLLTQTRTAITRGLIQPRTYGVELQYRF
CCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1646376 [H]