| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
Click here to switch to the map view.
The map label for this gene is viuA [H]
Identifier: 197106206
GI number: 197106206
Start: 3145504
End: 3148371
Strand: Direct
Name: viuA [H]
Synonym: PHZ_c2745
Alternate gene names: 197106206
Gene position: 3145504-3148371 (Clockwise)
Preceding gene: 197106202
Following gene: 197106207
Centisome position: 78.71
GC content: 65.97
Gene sequence:
>2868_bases ATGTTGAAGACTGCGACCCTTCGCGGCTGGCTGGCTGCTGGCGTGTCCATTGGGGCGCTCGCTGCGTTCGCGACCCCGGC CTCGGCCCAGGCCCCCGGCGGGAACGTCATCGAGGAACTGGTCGTCACCGCGCAGCGCCAAGCCGAGGCGCTGCAGGACG TTCCGATCGCGGTCTCCGCGTTCGACCAGAACGCGCTCGAGAAGTCCAAGATCGACGGCGGCCCGAACCTCGTGCTGGCC GTGCCGAACGTGAACTTCTCCAAGAGCAACTTCACCGGCTACAACTTCCAGATTCGCGGCATCGGCACGAAGCTGACGGC GGCGTCCGGCGACGCCGGCACGGGCATCCACCTCAACAACGCCCCGCTGATCGCCAACAACCTGTTCGAGACCGAGTTCT ACGACATGGAGCGCGTCGAGGTGCTCCGCGGTCCGCAGGGCACGCTCTACGGGCGCAACGCCACCGGCGGCGTCGTCAAC CTGATCACCGCCAAGCCGGTCGACACCTTCCAGGCCAACGCGCGCGCCGAGTACGGCAACTACAACTCCATCAAGCTGCG CGGCATGGTGAACATGCCGCTGGGCGACACCTTCGCCGTCCGCCTGGCCGGCAACTACCTGAAGCGCGACGGCTACGGCG AGAACCTCGCCACCGGCAACGACGCCGACGACCGCGACCTGTGGGCCGCCCGGGCGACGATCTCGTTCACGCCCAGCGAC CGCTTCCGCAGCTGGCTGCTGCTCGACCACTTCGAGGAGCACGACAACCGCTCGCGGATCGGCAAGCAGTTCTGCACCAA GGATCCGGGCCCGGCGAGCATCGGCGGGATGGCCTACTCGGCCGACCCGAACCGCGCGCAGATCCAGCGCGGCTTCTTCA GCCAGGGCTGCCTCGAGAGCTCGCTCTACGACCCCAGCGCCCTCGGCACGGTCAACTCCCAGGGCACCCTGGGCGGCCTC TTCGGCTCGCTGGCCGGCTTCCAGACCGGCGATGCGTACGCCGGGAAGGTGCAGACGTCCGACGTGCGGGACATCGAGTC GCTGTTCGACCCGATCTACAAGTCCAAGACCGACATCTACGAGTTCAACGCCGAGTTCGACGTCACCGACAACGTGACCA TGAACTGGATGTCGGCCTACACCTTCTACAAGCTGTACACGCGGCAGGACTACAACCGGTACCTGCCGTCGACGACCTTC AACGCCACGCCCAATCCCTGCAACTTCTTCACGGCGCCCTGCCGCACGCCCACCGGGCCGGACGTTCCTGCACCGCTGTA CGCCGGCATCTACGGGCTGCTGTTCCCGGGCGGGGTGGTCGGCGATCCGCAGAACGGGCCGCAGAACCGCTTCACGACCA GCGACATCTCGTCGGCCTACACCGAGCAGTGGAGCCACGAGGTGCGGTTCCAGTCGAACTTCGACGGGCCGTTCAACTTC AACGTCGGCGGCCTGCTCACGAAGTACACGTCCACGGGCGACTACTTCGTGATGTTCAACACCGGCACCGGCTTCTACCA GATGCAGAACGCGCTGACCGCCGGCAATCCCGCCGCCGCGAACTGCACGTCTGGGGCCGGATGCGTGGCGATCGACCCCA GCGCCGACCCCACCCGCCTCGGCCACAACTACTACGACAACTACGGGCCCTATAAGCTCGTGTCGTACGCCGCCTTCGGC GAGCTGTACTGGCAGATGAGCGACACGTTCAAATGGACGCTCGGCCTCCGCTACACCGTCGACGACAAGGAGGTTCAGGC CCACGAGACGTCGCTCGGAGAACCGGGCGCCGGTCCGATCCCGATCGGCCTGCGCAAGGTGAAGTTCAAGGAGCCGACCG GACGCTTCGGCTTCGACTGGAAGCCGGAACTCGGCTTCACCGACGACACCCTGATCTATGCGTTCTACGCGCGGGGTTAC AAGGCGGGCGGGATCAACCCCTCGTTCAGCCCGGGCGTGGGCATCGTGCCGGTCTCGCCGACCTTCGAGCCCGAGTTCAT CGACTCGTTCGAGATCGGCACCAAGAACACGCTGCTCGACGGCACCCTGCAGGTGAACGCGACCGGCTTCATGTATGACT ACAAGGGCTACCAGGTCTCCAAGATCGTGAACCGCACGTCGGTGAACGAGAACGTCGACGCCGAGGTGAAGGGCGTGGAG TTCGAGGCCATCTGGCAGCCGCTGCAGGGGCTGCGGTTCAACACCTCGATCGGCTGGCTCGACACCGAGCTGAAGAACGC CCGGTCGATCGACACCTTCGATCGCACCGCCGGCAATCCCAACCTGATCGTCGTGAAGTCGGACGTGGCGTCGAACTGCG TGGTGCCGCTCGCCAACGCCCAGACGGCCCTGGGCGCGTCCAACGCGCTGGGCAGCCCCTTCGTGCTGCTGGGGCTGTGC ACGCCGGTGTCCAACGCCGGCGCCGGGACCAACATCCTGGGCTCGGGCGCGATCGCCGCCGGTACGAACGCCTTCGGCGG TCTCGTCTCGGAAGGCGTGGAGCAGGACCTGTCGGGCAACAAGCTGCCGAACTCGCCCGAATGGACCGTCTCGCTGGGCG CCCAGTACACCTGGGTCTTCGGCGACTGGGACGCCACCCTGCGGGGCGACTACTACCATCAGTCCAAGACGTTCGCCCGG ATCTACAACTCCGATGCGGACCGGATCCGGTCTTGGGAGAACGTCAACGTCACCCTGTCGGTGAACAATCCCGACATGGG CCTGGAGCTGGGGGCGTTCATCAAGAACGCCACCGACGAGACGGCGATCACCGACTTCTACCTGACCGACGACTCCTCGG GCCTGTTCCGGAACGTCTTCTACACCGAGCCGCGCACCTACGGGGTGTGGATCTCGAAGAGCTTCTAA
Upstream 100 bases:
>100_bases AGTTGTCGGGGGGACACGCCGCTCTCCCCGCAGCGCGCCTTTCGCGGCGTAACGGCGAACACGGGCCGACAAGAGCCCGG CGCCACTGGGAGGAACATTG
Downstream 100 bases:
>100_bases GCCAGACCTGAAGCCGGGCGACCGGCGGGGGCGGCGGAGCGATCCGCCGCCCTTTTTCTATGCTCGTGCAGAGGGTGTTT TGAGTCGCAGGTATGCCCGT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 955; Mature: 955
Protein sequence:
>955_residues MLKTATLRGWLAAGVSIGALAAFATPASAQAPGGNVIEELVVTAQRQAEALQDVPIAVSAFDQNALEKSKIDGGPNLVLA VPNVNFSKSNFTGYNFQIRGIGTKLTAASGDAGTGIHLNNAPLIANNLFETEFYDMERVEVLRGPQGTLYGRNATGGVVN LITAKPVDTFQANARAEYGNYNSIKLRGMVNMPLGDTFAVRLAGNYLKRDGYGENLATGNDADDRDLWAARATISFTPSD RFRSWLLLDHFEEHDNRSRIGKQFCTKDPGPASIGGMAYSADPNRAQIQRGFFSQGCLESSLYDPSALGTVNSQGTLGGL FGSLAGFQTGDAYAGKVQTSDVRDIESLFDPIYKSKTDIYEFNAEFDVTDNVTMNWMSAYTFYKLYTRQDYNRYLPSTTF NATPNPCNFFTAPCRTPTGPDVPAPLYAGIYGLLFPGGVVGDPQNGPQNRFTTSDISSAYTEQWSHEVRFQSNFDGPFNF NVGGLLTKYTSTGDYFVMFNTGTGFYQMQNALTAGNPAAANCTSGAGCVAIDPSADPTRLGHNYYDNYGPYKLVSYAAFG ELYWQMSDTFKWTLGLRYTVDDKEVQAHETSLGEPGAGPIPIGLRKVKFKEPTGRFGFDWKPELGFTDDTLIYAFYARGY KAGGINPSFSPGVGIVPVSPTFEPEFIDSFEIGTKNTLLDGTLQVNATGFMYDYKGYQVSKIVNRTSVNENVDAEVKGVE FEAIWQPLQGLRFNTSIGWLDTELKNARSIDTFDRTAGNPNLIVVKSDVASNCVVPLANAQTALGASNALGSPFVLLGLC TPVSNAGAGTNILGSGAIAAGTNAFGGLVSEGVEQDLSGNKLPNSPEWTVSLGAQYTWVFGDWDATLRGDYYHQSKTFAR IYNSDADRIRSWENVNVTLSVNNPDMGLELGAFIKNATDETAITDFYLTDDSSGLFRNVFYTEPRTYGVWISKSF
Sequences:
>Translated_955_residues MLKTATLRGWLAAGVSIGALAAFATPASAQAPGGNVIEELVVTAQRQAEALQDVPIAVSAFDQNALEKSKIDGGPNLVLA VPNVNFSKSNFTGYNFQIRGIGTKLTAASGDAGTGIHLNNAPLIANNLFETEFYDMERVEVLRGPQGTLYGRNATGGVVN LITAKPVDTFQANARAEYGNYNSIKLRGMVNMPLGDTFAVRLAGNYLKRDGYGENLATGNDADDRDLWAARATISFTPSD RFRSWLLLDHFEEHDNRSRIGKQFCTKDPGPASIGGMAYSADPNRAQIQRGFFSQGCLESSLYDPSALGTVNSQGTLGGL FGSLAGFQTGDAYAGKVQTSDVRDIESLFDPIYKSKTDIYEFNAEFDVTDNVTMNWMSAYTFYKLYTRQDYNRYLPSTTF NATPNPCNFFTAPCRTPTGPDVPAPLYAGIYGLLFPGGVVGDPQNGPQNRFTTSDISSAYTEQWSHEVRFQSNFDGPFNF NVGGLLTKYTSTGDYFVMFNTGTGFYQMQNALTAGNPAAANCTSGAGCVAIDPSADPTRLGHNYYDNYGPYKLVSYAAFG ELYWQMSDTFKWTLGLRYTVDDKEVQAHETSLGEPGAGPIPIGLRKVKFKEPTGRFGFDWKPELGFTDDTLIYAFYARGY KAGGINPSFSPGVGIVPVSPTFEPEFIDSFEIGTKNTLLDGTLQVNATGFMYDYKGYQVSKIVNRTSVNENVDAEVKGVE FEAIWQPLQGLRFNTSIGWLDTELKNARSIDTFDRTAGNPNLIVVKSDVASNCVVPLANAQTALGASNALGSPFVLLGLC TPVSNAGAGTNILGSGAIAAGTNAFGGLVSEGVEQDLSGNKLPNSPEWTVSLGAQYTWVFGDWDATLRGDYYHQSKTFAR IYNSDADRIRSWENVNVTLSVNNPDMGLELGAFIKNATDETAITDFYLTDDSSGLFRNVFYTEPRTYGVWISKSF >Mature_955_residues MLKTATLRGWLAAGVSIGALAAFATPASAQAPGGNVIEELVVTAQRQAEALQDVPIAVSAFDQNALEKSKIDGGPNLVLA VPNVNFSKSNFTGYNFQIRGIGTKLTAASGDAGTGIHLNNAPLIANNLFETEFYDMERVEVLRGPQGTLYGRNATGGVVN LITAKPVDTFQANARAEYGNYNSIKLRGMVNMPLGDTFAVRLAGNYLKRDGYGENLATGNDADDRDLWAARATISFTPSD RFRSWLLLDHFEEHDNRSRIGKQFCTKDPGPASIGGMAYSADPNRAQIQRGFFSQGCLESSLYDPSALGTVNSQGTLGGL FGSLAGFQTGDAYAGKVQTSDVRDIESLFDPIYKSKTDIYEFNAEFDVTDNVTMNWMSAYTFYKLYTRQDYNRYLPSTTF NATPNPCNFFTAPCRTPTGPDVPAPLYAGIYGLLFPGGVVGDPQNGPQNRFTTSDISSAYTEQWSHEVRFQSNFDGPFNF NVGGLLTKYTSTGDYFVMFNTGTGFYQMQNALTAGNPAAANCTSGAGCVAIDPSADPTRLGHNYYDNYGPYKLVSYAAFG ELYWQMSDTFKWTLGLRYTVDDKEVQAHETSLGEPGAGPIPIGLRKVKFKEPTGRFGFDWKPELGFTDDTLIYAFYARGY KAGGINPSFSPGVGIVPVSPTFEPEFIDSFEIGTKNTLLDGTLQVNATGFMYDYKGYQVSKIVNRTSVNENVDAEVKGVE FEAIWQPLQGLRFNTSIGWLDTELKNARSIDTFDRTAGNPNLIVVKSDVASNCVVPLANAQTALGASNALGSPFVLLGLC TPVSNAGAGTNILGSGAIAAGTNAFGGLVSEGVEQDLSGNKLPNSPEWTVSLGAQYTWVFGDWDATLRGDYYHQSKTFAR IYNSDADRIRSWENVNVTLSVNNPDMGLELGAFIKNATDETAITDFYLTDDSSGLFRNVFYTEPRTYGVWISKSF
Specific function: Receptor for ferric vibriobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=162, Percent_Identity=30.8641975308642, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug [H]
EC number: NA
Molecular weight: Translated: 103676; Mature: 103676
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKTATLRGWLAAGVSIGALAAFATPASAQAPGGNVIEELVVTAQRQAEALQDVPIAVSA CCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE FDQNALEKSKIDGGPNLVLAVPNVNFSKSNFTGYNFQIRGIGTKLTAASGDAGTGIHLNN CCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCEEECC APLIANNLFETEFYDMERVEVLRGPQGTLYGRNATGGVVNLITAKPVDTFQANARAEYGN CCEEECCCCCCHHCCCHHHHHHCCCCCEEECCCCCCCEEEEEECCCCCHHHCCCCCCCCC YNSIKLRGMVNMPLGDTFAVRLAGNYLKRDGYGENLATGNDADDRDLWAARATISFTPSD CCEEEEEEEEECCCCCEEEEEEECHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCH RFRSWLLLDHFEEHDNRSRIGKQFCTKDPGPASIGGMAYSADPNRAQIQRGFFSQGCLES HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHCHHHHCCHHH SLYDPSALGTVNSQGTLGGLFGSLAGFQTGDAYAGKVQTSDVRDIESLFDPIYKSKTDIY CCCCCHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCEE EFNAEFDVTDNVTMNWMSAYTFYKLYTRQDYNRYLPSTTFNATPNPCNFFTAPCRTPTGP EECCEEECCCCCEEHHHHHEEEEEEEECCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCC DVPAPLYAGIYGLLFPGGVVGDPQNGPQNRFTTSDISSAYTEQWSHEVRFQSNFDGPFNF CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCEEC NVGGLLTKYTSTGDYFVMFNTGTGFYQMQNALTAGNPAAANCTSGAGCVAIDPSADPTRL CCCCEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHC GHNYYDNYGPYKLVSYAAFGELYWQMSDTFKWTLGLRYTVDDKEVQAHETSLGEPGAGPI CCCCCCCCCCHHHHHHHHHHHHEEEECCCEEEEEEEEEEECCCHHHHHHCCCCCCCCCCC PIGLRKVKFKEPTGRFGFDWKPELGFTDDTLIYAFYARGYKAGGINPSFSPGVGIVPVSP CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCCCCCCCCCEEEEECCC TFEPEFIDSFEIGTKNTLLDGTLQVNATGFMYDYKGYQVSKIVNRTSVNENVDAEVKGVE CCCCCCCCCCCCCCCCEEEECEEEEEEEEEEEECCCEEEHHHHHHCCCCCCCCCEEECCC FEAIWQPLQGLRFNTSIGWLDTELKNARSIDTFDRTAGNPNLIVVKSDVASNCVVPLANA HHHHHHHHHCCEECCCCCEEEHHHHCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEECCC QTALGASNALGSPFVLLGLCTPVSNAGAGTNILGSGAIAAGTNAFGGLVSEGVEQDLSGN CHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEECCCCEECCCCHHHHHHHHHHHHCCCCC KLPNSPEWTVSLGAQYTWVFGDWDATLRGDYYHQSKTFARIYNSDADRIRSWENVNVTLS CCCCCCCEEEEECCEEEEEEECCCCEECCCEECCCHHHHHHHCCCHHHHCCCCCEEEEEE VNNPDMGLELGAFIKNATDETAITDFYLTDDSSGLFRNVFYTEPRTYGVWISKSF ECCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEECCCEEEEEEEECC >Mature Secondary Structure MLKTATLRGWLAAGVSIGALAAFATPASAQAPGGNVIEELVVTAQRQAEALQDVPIAVSA CCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE FDQNALEKSKIDGGPNLVLAVPNVNFSKSNFTGYNFQIRGIGTKLTAASGDAGTGIHLNN CCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCEEECC APLIANNLFETEFYDMERVEVLRGPQGTLYGRNATGGVVNLITAKPVDTFQANARAEYGN CCEEECCCCCCHHCCCHHHHHHCCCCCEEECCCCCCCEEEEEECCCCCHHHCCCCCCCCC YNSIKLRGMVNMPLGDTFAVRLAGNYLKRDGYGENLATGNDADDRDLWAARATISFTPSD CCEEEEEEEEECCCCCEEEEEEECHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCH RFRSWLLLDHFEEHDNRSRIGKQFCTKDPGPASIGGMAYSADPNRAQIQRGFFSQGCLES HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHCHHHHCCHHH SLYDPSALGTVNSQGTLGGLFGSLAGFQTGDAYAGKVQTSDVRDIESLFDPIYKSKTDIY CCCCCHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCEE EFNAEFDVTDNVTMNWMSAYTFYKLYTRQDYNRYLPSTTFNATPNPCNFFTAPCRTPTGP EECCEEECCCCCEEHHHHHEEEEEEEECCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCC DVPAPLYAGIYGLLFPGGVVGDPQNGPQNRFTTSDISSAYTEQWSHEVRFQSNFDGPFNF CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCEEC NVGGLLTKYTSTGDYFVMFNTGTGFYQMQNALTAGNPAAANCTSGAGCVAIDPSADPTRL CCCCEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHC GHNYYDNYGPYKLVSYAAFGELYWQMSDTFKWTLGLRYTVDDKEVQAHETSLGEPGAGPI CCCCCCCCCCHHHHHHHHHHHHEEEECCCEEEEEEEEEEECCCHHHHHHCCCCCCCCCCC PIGLRKVKFKEPTGRFGFDWKPELGFTDDTLIYAFYARGYKAGGINPSFSPGVGIVPVSP CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCCCCCCCCCEEEEECCC TFEPEFIDSFEIGTKNTLLDGTLQVNATGFMYDYKGYQVSKIVNRTSVNENVDAEVKGVE CCCCCCCCCCCCCCCCEEEECEEEEEEEEEEEECCCEEEHHHHHHCCCCCCCCCEEECCC FEAIWQPLQGLRFNTSIGWLDTELKNARSIDTFDRTAGNPNLIVVKSDVASNCVVPLANA HHHHHHHHHCCEECCCCCEEEHHHHCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEECCC QTALGASNALGSPFVLLGLCTPVSNAGAGTNILGSGAIAAGTNAFGGLVSEGVEQDLSGN CHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEECCCCEECCCCHHHHHHHHHHHHCCCCC KLPNSPEWTVSLGAQYTWVFGDWDATLRGDYYHQSKTFARIYNSDADRIRSWENVNVTLS CCCCCCCEEEEECCEEEEEEECCCCEECCCEECCCHHHHHHHCCCHHHHCCCCCEEEEEE VNNPDMGLELGAFIKNATDETAITDFYLTDDSSGLFRNVFYTEPRTYGVWISKSF ECCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEECCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1317381 [H]