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The map label for this gene is hfaC [H]

Identifier: 197106162

GI number: 197106162

Start: 3094693

End: 3096507

Strand: Direct

Name: hfaC [H]

Synonym: PHZ_c2701

Alternate gene names: 197106162

Gene position: 3094693-3096507 (Clockwise)

Preceding gene: 197106160

Following gene: 197106163

Centisome position: 77.44

GC content: 73.66

Gene sequence:

>1815_bases
ATGAGAGCCCCCGCGAGAGCCCCCGCGCCCATCCTCGCCCTGAAGGACGTCCGCCTGGCCGACGGGCCGCGGATGCTGTT
CGACGGGGTCGACCTCGGCCTCGAGCCGCGCGTGCGGGCCTGCCTCGTCGGCCGCAACGGCGCGGGCAAGTCCACGCTGC
TGCGGATCATCGCCGGCCAGATCGAGGCCGACGACGGCGAGCGGGTGATCAGCCCCGGCGTGCGGGTGTCGCTCGTGCCC
CAGGAGCCCGAGATCGCCGGCGGAACCCTGCTGGACTATGCGACGGGCGGCGGCGCGCCGGCCCACCGCGCCGAGGCCGA
GCTGATGGCCTTCGGCCTCGATCCCGCGAAGGCGGCGCAGGGCCTCTCGGGCGGCGAGACCCGGCGCGCGGCCCTGGCCC
GCGCCTTCGCCGAGAATCCCGACGTCCTGCTGCTGGACGAGCCCACCAACCACCTCGACATCCTGGCCATCGAGACGCTG
GAGCAGGCGATCGCCGCCAGCCGCGCCGCGGCCCTGATCGTCAGCCACGACCGCGCCTTCCTGGAGCGGGTGACCCAGCG
CTGCTTCTGGCTGGAGCACCGCCAGGTCCGCCGCCTGGACCGCGGCTTCGCCGAGTTCGACGCCTGGGTCGAGAAGATCG
AGGCGCAGGAGGCCGAGGAGGCCCGCCGGCTCGACAAGGCGATCGAGCGCGAGCAGCACTGGCTGGCCCGCGGCGTCACC
GCCCGCCGGGCGCGGAACGAGGGCCGCCGCCGCCGCCTGATCGCCATGCGGCAGGCCAAGTCCGAGCGGCTGAAGGAGGC
GCGCGGGTCCCTGAACATGGGCCTCGCCAGCTCGGGGACCTCGGGCCAGCGGGTCGTCGAGGCCAAGGGCCTTTCAAAGG
CGTTCGGCGAGCGGGTGATCCTGAAGACGTTCTCCACCCGCATCCTGCGCGGCGACCGGGTGGCGATCGTCGGGCCCAAC
GGCGCGGGCAAGACCACGCTGGTGAAGCTGCTGCTGGGCGAGCTCGCGCCCGACGCCGGCGAGGTGAAGCTCGGGACGAA
CCTGGCGGTCAGCTACATCGACCAGGCGCGCGGGGCGCTGAAGGAGGACATGACCGTCCGCGACGTGCTCACCGAGGGCG
GCGGCGACCAGGTGATGGTGCGCGGGGCCCCCAAGCACGTGAACGCCTACGCCAAGGACTTCCTATTCACCGACGCCCAG
CTGCGCCAGCCGGTGAAGAGCCTCTCCGGCGGCGAGCGCAACCGCCTCCTGCTGGCGCGGGCCCTGGCGAGCCCGGCGAA
CGTGATGGTGCTGGACGAGCCGACCAACGACCTCGACATGGACACCCTCGACCTGCTCGAGGACCTGCTGGCCGACTACG
ACGGCACCCTGATCCTGGTCAGCCACGACCGCGACTTCATCGACCGGCTGGCCACCTCCACCATCGGCCTGGACGGGACC
GGGCGGGCGGTCGAGACGCCGGGCGGCTGGCAGGACTTCCTTTCCCAGAACCCGGGCTTCTTCGGCCGGGTGGAGCCGAA
GCCCGAGCCGGCGAAGGCCGCGCCCGCGCCGCCGCGCGCGGCGGCCGCACCCGCCAAGCTGTCCTACAAGGAGCAGCGCC
GGCTGGCCGAGCTGGACGCGCTGATCCACGACCTGCCGGGCAAGATCGCGACGCTGGAGACGGCGCTCGCAGATCCCGAG
CTCTATGCCCGCGATCCGGCCGGTTTCGAGCGGTTCAGCCGCGCGCTGGAGGCGGCCCAGGCCCAGCTCGCCGCGGCCGA
GGAGGAGTGGCTGGCCCTGGAGGAGCGTCGCGAGGCGCTGGAGGCGGGCCGGTAG

Upstream 100 bases:

>100_bases
AGAACGGGTCACGCGGCATCGCGCCCATGTAGGCCGCCTCGGCCGCGGACAGAAGAGCGACCTTTCGCCTGCGGCGGGGA
ACCTCTATCTCCGGCGGCCC

Downstream 100 bases:

>100_bases
CGCTTTCCTGTGGATAAGCCCAGGCGCTTGAATCCACGCGCGAAACGGTCGCCCGTCCCGCGGTTGTTAACAGTTTCTTC
ACGGATTCTTGACGCCCGGC

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: Protein HfaC [H]

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MRAPARAPAPILALKDVRLADGPRMLFDGVDLGLEPRVRACLVGRNGAGKSTLLRIIAGQIEADDGERVISPGVRVSLVP
QEPEIAGGTLLDYATGGGAPAHRAEAELMAFGLDPAKAAQGLSGGETRRAALARAFAENPDVLLLDEPTNHLDILAIETL
EQAIAASRAAALIVSHDRAFLERVTQRCFWLEHRQVRRLDRGFAEFDAWVEKIEAQEAEEARRLDKAIEREQHWLARGVT
ARRARNEGRRRRLIAMRQAKSERLKEARGSLNMGLASSGTSGQRVVEAKGLSKAFGERVILKTFSTRILRGDRVAIVGPN
GAGKTTLVKLLLGELAPDAGEVKLGTNLAVSYIDQARGALKEDMTVRDVLTEGGGDQVMVRGAPKHVNAYAKDFLFTDAQ
LRQPVKSLSGGERNRLLLARALASPANVMVLDEPTNDLDMDTLDLLEDLLADYDGTLILVSHDRDFIDRLATSTIGLDGT
GRAVETPGGWQDFLSQNPGFFGRVEPKPEPAKAAPAPPRAAAAPAKLSYKEQRRLAELDALIHDLPGKIATLETALADPE
LYARDPAGFERFSRALEAAQAQLAAAEEEWLALEERREALEAGR

Sequences:

>Translated_604_residues
MRAPARAPAPILALKDVRLADGPRMLFDGVDLGLEPRVRACLVGRNGAGKSTLLRIIAGQIEADDGERVISPGVRVSLVP
QEPEIAGGTLLDYATGGGAPAHRAEAELMAFGLDPAKAAQGLSGGETRRAALARAFAENPDVLLLDEPTNHLDILAIETL
EQAIAASRAAALIVSHDRAFLERVTQRCFWLEHRQVRRLDRGFAEFDAWVEKIEAQEAEEARRLDKAIEREQHWLARGVT
ARRARNEGRRRRLIAMRQAKSERLKEARGSLNMGLASSGTSGQRVVEAKGLSKAFGERVILKTFSTRILRGDRVAIVGPN
GAGKTTLVKLLLGELAPDAGEVKLGTNLAVSYIDQARGALKEDMTVRDVLTEGGGDQVMVRGAPKHVNAYAKDFLFTDAQ
LRQPVKSLSGGERNRLLLARALASPANVMVLDEPTNDLDMDTLDLLEDLLADYDGTLILVSHDRDFIDRLATSTIGLDGT
GRAVETPGGWQDFLSQNPGFFGRVEPKPEPAKAAPAPPRAAAAPAKLSYKEQRRLAELDALIHDLPGKIATLETALADPE
LYARDPAGFERFSRALEAAQAQLAAAEEEWLALEERREALEAGR
>Mature_604_residues
MRAPARAPAPILALKDVRLADGPRMLFDGVDLGLEPRVRACLVGRNGAGKSTLLRIIAGQIEADDGERVISPGVRVSLVP
QEPEIAGGTLLDYATGGGAPAHRAEAELMAFGLDPAKAAQGLSGGETRRAALARAFAENPDVLLLDEPTNHLDILAIETL
EQAIAASRAAALIVSHDRAFLERVTQRCFWLEHRQVRRLDRGFAEFDAWVEKIEAQEAEEARRLDKAIEREQHWLARGVT
ARRARNEGRRRRLIAMRQAKSERLKEARGSLNMGLASSGTSGQRVVEAKGLSKAFGERVILKTFSTRILRGDRVAIVGPN
GAGKTTLVKLLLGELAPDAGEVKLGTNLAVSYIDQARGALKEDMTVRDVLTEGGGDQVMVRGAPKHVNAYAKDFLFTDAQ
LRQPVKSLSGGERNRLLLARALASPANVMVLDEPTNDLDMDTLDLLEDLLADYDGTLILVSHDRDFIDRLATSTIGLDGT
GRAVETPGGWQDFLSQNPGFFGRVEPKPEPAKAAPAPPRAAAAPAKLSYKEQRRLAELDALIHDLPGKIATLETALADPE
LYARDPAGFERFSRALEAAQAQLAAAEEEWLALEERREALEAGR

Specific function: Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adhere to surfaces [H]

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=544, Percent_Identity=29.5955882352941, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI69354671, Length=521, Percent_Identity=27.447216890595, Blast_Score=136, Evalue=7e-32,
Organism=Homo sapiens, GI10947135, Length=521, Percent_Identity=27.447216890595, Blast_Score=135, Evalue=8e-32,
Organism=Homo sapiens, GI10947137, Length=382, Percent_Identity=29.8429319371728, Blast_Score=132, Evalue=1e-30,
Organism=Homo sapiens, GI27881506, Length=382, Percent_Identity=29.8429319371728, Blast_Score=131, Evalue=2e-30,
Organism=Homo sapiens, GI108773784, Length=512, Percent_Identity=26.3671875, Blast_Score=91, Evalue=4e-18,
Organism=Homo sapiens, GI108773782, Length=512, Percent_Identity=26.3671875, Blast_Score=91, Evalue=4e-18,
Organism=Homo sapiens, GI157502201, Length=276, Percent_Identity=26.4492753623188, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI9961252, Length=159, Percent_Identity=29.559748427673, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI4505771, Length=159, Percent_Identity=29.559748427673, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI9961250, Length=159, Percent_Identity=29.559748427673, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI157502203, Length=276, Percent_Identity=26.4492753623188, Blast_Score=67, Evalue=6e-11,
Organism=Escherichia coli, GI1787182, Length=629, Percent_Identity=37.9968203497615, Blast_Score=364, Evalue=1e-102,
Organism=Escherichia coli, GI2367384, Length=526, Percent_Identity=31.9391634980989, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI1787041, Length=538, Percent_Identity=28.8104089219331, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI1789751, Length=653, Percent_Identity=26.3399693721286, Blast_Score=196, Evalue=4e-51,
Organism=Escherichia coli, GI1788165, Length=232, Percent_Identity=30.6034482758621, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI87081782, Length=462, Percent_Identity=23.8095238095238, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI48994943, Length=496, Percent_Identity=25.8064516129032, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=31.25, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787758, Length=184, Percent_Identity=32.0652173913043, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787029, Length=235, Percent_Identity=30.6382978723404, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786803, Length=205, Percent_Identity=31.7073170731707, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081709, Length=202, Percent_Identity=28.7128712871287, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1786253, Length=186, Percent_Identity=31.1827956989247, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788761, Length=199, Percent_Identity=31.6582914572864, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87081791, Length=195, Percent_Identity=29.2307692307692, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1790467, Length=218, Percent_Identity=28.8990825688073, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787164, Length=179, Percent_Identity=29.608938547486, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1789891, Length=220, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI48995001, Length=206, Percent_Identity=29.126213592233, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787712, Length=213, Percent_Identity=30.0469483568075, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI87081834, Length=194, Percent_Identity=28.8659793814433, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=543, Percent_Identity=26.1510128913444, Blast_Score=151, Evalue=8e-37,
Organism=Caenorhabditis elegans, GI17553372, Length=515, Percent_Identity=28.3495145631068, Blast_Score=142, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI17555318, Length=379, Percent_Identity=29.8153034300792, Blast_Score=136, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI71996809, Length=182, Percent_Identity=33.5164835164835, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=182, Percent_Identity=33.5164835164835, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=182, Percent_Identity=33.5164835164835, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=197, Percent_Identity=32.48730964467, Blast_Score=70, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321121, Length=411, Percent_Identity=27.9805352798054, Blast_Score=133, Evalue=8e-32,
Organism=Saccharomyces cerevisiae, GI6323278, Length=354, Percent_Identity=29.9435028248588, Blast_Score=128, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6320874, Length=534, Percent_Identity=26.0299625468165, Blast_Score=127, Evalue=4e-30,
Organism=Saccharomyces cerevisiae, GI6324314, Length=352, Percent_Identity=29.8295454545455, Blast_Score=126, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6325030, Length=199, Percent_Identity=36.6834170854271, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24642252, Length=528, Percent_Identity=29.7348484848485, Blast_Score=168, Evalue=9e-42,
Organism=Drosophila melanogaster, GI18859989, Length=528, Percent_Identity=29.7348484848485, Blast_Score=168, Evalue=9e-42,
Organism=Drosophila melanogaster, GI24666836, Length=534, Percent_Identity=29.9625468164794, Blast_Score=153, Evalue=3e-37,
Organism=Drosophila melanogaster, GI24641342, Length=538, Percent_Identity=27.3234200743494, Blast_Score=150, Evalue=3e-36,
Organism=Drosophila melanogaster, GI221500365, Length=151, Percent_Identity=32.4503311258278, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007184, Length=151, Percent_Identity=32.4503311258278, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574259, Length=194, Percent_Identity=31.4432989690722, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR007406 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 65450; Mature: 65450

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAPARAPAPILALKDVRLADGPRMLFDGVDLGLEPRVRACLVGRNGAGKSTLLRIIAGQ
CCCCCCCCCCEEEEECCEECCCCEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHC
IEADDGERVISPGVRVSLVPQEPEIAGGTLLDYATGGGAPAHRAEAELMAFGLDPAKAAQ
CCCCCCCEEECCCCEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHEECCCHHHHHC
GLSGGETRRAALARAFAENPDVLLLDEPTNHLDILAIETLEQAIAASRAAALIVSHDRAF
CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHEEEEECCHHH
LERVTQRCFWLEHRQVRRLDRGFAEFDAWVEKIEAQEAEEARRLDKAIEREQHWLARGVT
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARRARNEGRRRRLIAMRQAKSERLKEARGSLNMGLASSGTSGQRVVEAKGLSKAFGERVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCHHH
LKTFSTRILRGDRVAIVGPNGAGKTTLVKLLLGELAPDAGEVKLGTNLAVSYIDQARGAL
HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHH
KEDMTVRDVLTEGGGDQVMVRGAPKHVNAYAKDFLFTDAQLRQPVKSLSGGERNRLLLAR
HHCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHH
ALASPANVMVLDEPTNDLDMDTLDLLEDLLADYDGTLILVSHDRDFIDRLATSTIGLDGT
HHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCC
GRAVETPGGWQDFLSQNPGFFGRVEPKPEPAKAAPAPPRAAAAPAKLSYKEQRRLAELDA
CCEECCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LIHDLPGKIATLETALADPELYARDPAGFERFSRALEAAQAQLAAAEEEWLALEERREAL
HHHHCCCCHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAGR
HCCC
>Mature Secondary Structure
MRAPARAPAPILALKDVRLADGPRMLFDGVDLGLEPRVRACLVGRNGAGKSTLLRIIAGQ
CCCCCCCCCCEEEEECCEECCCCEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHC
IEADDGERVISPGVRVSLVPQEPEIAGGTLLDYATGGGAPAHRAEAELMAFGLDPAKAAQ
CCCCCCCEEECCCCEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHEECCCHHHHHC
GLSGGETRRAALARAFAENPDVLLLDEPTNHLDILAIETLEQAIAASRAAALIVSHDRAF
CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHEEEEECCHHH
LERVTQRCFWLEHRQVRRLDRGFAEFDAWVEKIEAQEAEEARRLDKAIEREQHWLARGVT
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARRARNEGRRRRLIAMRQAKSERLKEARGSLNMGLASSGTSGQRVVEAKGLSKAFGERVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCHHH
LKTFSTRILRGDRVAIVGPNGAGKTTLVKLLLGELAPDAGEVKLGTNLAVSYIDQARGAL
HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHH
KEDMTVRDVLTEGGGDQVMVRGAPKHVNAYAKDFLFTDAQLRQPVKSLSGGERNRLLLAR
HHCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHH
ALASPANVMVLDEPTNDLDMDTLDLLEDLLADYDGTLILVSHDRDFIDRLATSTIGLDGT
HHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCC
GRAVETPGGWQDFLSQNPGFFGRVEPKPEPAKAAPAPPRAAAAPAKLSYKEQRRLAELDA
CCEECCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LIHDLPGKIATLETALADPELYARDPAGFERFSRALEAAQAQLAAAEEEWLALEERREAL
HHHHCCCCHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAGR
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Endonuclease; Excision [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11259647; 8150261 [H]