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The map label for this gene is ydaB [H]

Identifier: 197105992

GI number: 197105992

Start: 2905614

End: 2907125

Strand: Reverse

Name: ydaB [H]

Synonym: PHZ_c2531

Alternate gene names: 197105992

Gene position: 2907125-2905614 (Counterclockwise)

Preceding gene: 197105995

Following gene: 197105991

Centisome position: 72.75

GC content: 70.63

Gene sequence:

>1512_bases
ATGAATCTGGCCCAGCTGGTCCGCGGCGTGCTGCAGTTGCAGCCGGACGCAGAGGCGATCGAACACGGCGGGAGCTGGTG
GACATGGTCGGACCTGGAGCAGGTGATCGACCGCCTCGACGCCATGCTGAACGAGGCCGGGCTCGGCGCGGGCGTGCGGG
TCGGCGGGCTGCTGCGGAACACCTCTTCGATCGCCGCGGGAATCATCGGGCTGGTGATCACCGATCGCTGCGTGGTCACG
CTCACCCCGATGCTGCCGGACGAGCGGCTGAGCGCCGACATCCTGGCGCTGCGGCCCCCCGCCATCCTGGGCTGCGCCGA
GGACTGGGCCCGGCCCGCCATCCTGGCGGCCGCCCGTGAGATCGGATGCCTGGGGCTCGAGCTGACCGGCGACCGATCCG
ATCCCGTGCGGCTGGTCCCCGGACTCGAGACGGTCGCTGGCTCGGATCTGCGCCGGGACGCCCCCGGAATCGCCGTCGAG
ATGCTCACCAGCGGGACGACCGGCGCGCCCAAGCGGGTGCCGCTGAAGGCCAGGACCCTGGAGCAGGCGGTGATCGACGC
CGGGGTCTACGACAACCGCCGGCCCGACGATCCGCCGAAGCTGCGCGGCGGGGTGCAGATCCTGAATGCGCCGTTCGCGC
ACATCAGCGGGGTATTCGGCCTGTTCAACTGCGTGGCCGCGGGCCGCAAGTCCTGCCTGCTCGGCCGCTTCACCGTGGAA
AGCTGGGTCGATGCCGTGCGCCGCCACCGGCCGAAGGTCGCCGGCGCTCCGCCGTCCGCCTTGCGGATGATCCTGGACGC
CGACGTGCCGAAGGAGGATCTCAGCAGTCTTGTGGCCTTCCGGGCCGGCACCGCGCCCCTCGACCCGGACCTGGGCGACG
CCTTCTTCGAACGCTACGGCATCCCGGTGCTGCAGAACTACGGCGCCACCGAGTTCGCCGGCGGCGTGGCCGGCTGGACG
CTCGCCGACTTCAAGGCCCACCACAAGGACAAGCGCGGTTCGGTCGGGCGGATGAATCCGGGCTGCCATGCCCGCATCGT
CGATCCCGAGACCGGCGAGATCCTGCCGTTCGGCACGGAAGGCCTGCTGGAGCTCAAGGCGGACCACCTGGGCGATGGCG
ACTGGTTCCGCACCACGGACCTGGCCGTGCTAGACCCGGACAACTTCCTCTGGATCAAGGGGCGCTTCGACAACGCCATC
ATCCGGGGCGGCTTCAAGGTGTTCCCCGACGACGTCGTGCGGGCCCTGGAGCAGCATCCGTCGATCCGTGAGGCGGCCGT
CGTCGACGTCCCGGACCCGCGTCTCGGCCAGGTGCCTGTCGCGGCCTACATCGTGAAATCGGGGGCGTCCGCGCCCGCCG
AGGAGGAGCTGCGCGCCTTCCTGCGCGAGCGCTTGCTGCCGTACCAGGTCCCGGCGCAGCTGAAGGCGCTCCAGGAGATG
CCGCGCACGCCTTCGCTCAAGGTCAGCCAACCCGAACTCAGGAAGCTCTTCACCGGTCCGCTGGCCGCCTGA

Upstream 100 bases:

>100_bases
CTCCTCGATCCGCTGGTCCGGTCCGATGACCAGTTGATTGCGGCTCAATTCGTTATATAAGTGAAACAGGTCATAGCAAA
CTCTCCGGAGAGTCCCCGTA

Downstream 100 bases:

>100_bases
GCGGCCTCAGAGATCGGGATGCAATGGAAGCGAGGAAAAAGCCATGACGGACGCCGCACTGAAGGACAAGCCGCCATCCA
ACTACGGCGTGCTCACGGAC

Product: AMP-dependent synthetase and ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 503

Protein sequence:

>503_residues
MNLAQLVRGVLQLQPDAEAIEHGGSWWTWSDLEQVIDRLDAMLNEAGLGAGVRVGGLLRNTSSIAAGIIGLVITDRCVVT
LTPMLPDERLSADILALRPPAILGCAEDWARPAILAAAREIGCLGLELTGDRSDPVRLVPGLETVAGSDLRRDAPGIAVE
MLTSGTTGAPKRVPLKARTLEQAVIDAGVYDNRRPDDPPKLRGGVQILNAPFAHISGVFGLFNCVAAGRKSCLLGRFTVE
SWVDAVRRHRPKVAGAPPSALRMILDADVPKEDLSSLVAFRAGTAPLDPDLGDAFFERYGIPVLQNYGATEFAGGVAGWT
LADFKAHHKDKRGSVGRMNPGCHARIVDPETGEILPFGTEGLLELKADHLGDGDWFRTTDLAVLDPDNFLWIKGRFDNAI
IRGGFKVFPDDVVRALEQHPSIREAAVVDVPDPRLGQVPVAAYIVKSGASAPAEEELRAFLRERLLPYQVPAQLKALQEM
PRTPSLKVSQPELRKLFTGPLAA

Sequences:

>Translated_503_residues
MNLAQLVRGVLQLQPDAEAIEHGGSWWTWSDLEQVIDRLDAMLNEAGLGAGVRVGGLLRNTSSIAAGIIGLVITDRCVVT
LTPMLPDERLSADILALRPPAILGCAEDWARPAILAAAREIGCLGLELTGDRSDPVRLVPGLETVAGSDLRRDAPGIAVE
MLTSGTTGAPKRVPLKARTLEQAVIDAGVYDNRRPDDPPKLRGGVQILNAPFAHISGVFGLFNCVAAGRKSCLLGRFTVE
SWVDAVRRHRPKVAGAPPSALRMILDADVPKEDLSSLVAFRAGTAPLDPDLGDAFFERYGIPVLQNYGATEFAGGVAGWT
LADFKAHHKDKRGSVGRMNPGCHARIVDPETGEILPFGTEGLLELKADHLGDGDWFRTTDLAVLDPDNFLWIKGRFDNAI
IRGGFKVFPDDVVRALEQHPSIREAAVVDVPDPRLGQVPVAAYIVKSGASAPAEEELRAFLRERLLPYQVPAQLKALQEM
PRTPSLKVSQPELRKLFTGPLAA
>Mature_503_residues
MNLAQLVRGVLQLQPDAEAIEHGGSWWTWSDLEQVIDRLDAMLNEAGLGAGVRVGGLLRNTSSIAAGIIGLVITDRCVVT
LTPMLPDERLSADILALRPPAILGCAEDWARPAILAAAREIGCLGLELTGDRSDPVRLVPGLETVAGSDLRRDAPGIAVE
MLTSGTTGAPKRVPLKARTLEQAVIDAGVYDNRRPDDPPKLRGGVQILNAPFAHISGVFGLFNCVAAGRKSCLLGRFTVE
SWVDAVRRHRPKVAGAPPSALRMILDADVPKEDLSSLVAFRAGTAPLDPDLGDAFFERYGIPVLQNYGATEFAGGVAGWT
LADFKAHHKDKRGSVGRMNPGCHARIVDPETGEILPFGTEGLLELKADHLGDGDWFRTTDLAVLDPDNFLWIKGRFDNAI
IRGGFKVFPDDVVRALEQHPSIREAAVVDVPDPRLGQVPVAAYIVKSGASAPAEEELRAFLRERLLPYQVPAQLKALQEM
PRTPSLKVSQPELRKLFTGPLAA

Specific function: Unknown

COG id: COG0318

COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

Organism=Homo sapiens, GI42544132, Length=286, Percent_Identity=29.020979020979, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI156151445, Length=354, Percent_Identity=27.4011299435028, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI122937307, Length=263, Percent_Identity=29.6577946768061, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI38505220, Length=536, Percent_Identity=24.4402985074627, Blast_Score=109, Evalue=7e-24,
Organism=Homo sapiens, GI115511026, Length=267, Percent_Identity=28.8389513108614, Blast_Score=96, Evalue=8e-20,
Organism=Homo sapiens, GI157311624, Length=357, Percent_Identity=25.2100840336134, Blast_Score=87, Evalue=5e-17,
Organism=Homo sapiens, GI157311622, Length=357, Percent_Identity=25.2100840336134, Blast_Score=87, Evalue=5e-17,
Organism=Homo sapiens, GI58082049, Length=358, Percent_Identity=24.8603351955307, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI187761345, Length=395, Percent_Identity=26.3291139240506, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI187761343, Length=395, Percent_Identity=26.3291139240506, Blast_Score=84, Evalue=4e-16,
Organism=Escherichia coli, GI145693145, Length=358, Percent_Identity=27.9329608938547, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1788107, Length=246, Percent_Identity=29.6747967479675, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI221142682, Length=353, Percent_Identity=24.929178470255, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790505, Length=374, Percent_Identity=25.4010695187166, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1786810, Length=367, Percent_Identity=25.8855585831063, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788595, Length=375, Percent_Identity=23.2, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17558820, Length=497, Percent_Identity=25.3521126760563, Blast_Score=123, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI32563687, Length=473, Percent_Identity=24.3128964059197, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17559526, Length=358, Percent_Identity=27.9329608938547, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71996755, Length=352, Percent_Identity=23.8636363636364, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17538037, Length=366, Percent_Identity=25.6830601092896, Blast_Score=88, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17557194, Length=366, Percent_Identity=24.3169398907104, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17531443, Length=359, Percent_Identity=23.6768802228412, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71994703, Length=363, Percent_Identity=23.4159779614325, Blast_Score=78, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI71994694, Length=363, Percent_Identity=23.4159779614325, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560308, Length=371, Percent_Identity=26.9541778975741, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71994690, Length=363, Percent_Identity=23.4159779614325, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560140, Length=300, Percent_Identity=21.6666666666667, Blast_Score=78, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6319699, Length=528, Percent_Identity=23.4848484848485, Blast_Score=105, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6323182, Length=388, Percent_Identity=26.2886597938144, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6319264, Length=386, Percent_Identity=25.9067357512953, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI21355181, Length=503, Percent_Identity=24.6520874751491, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24581924, Length=364, Percent_Identity=26.3736263736264, Blast_Score=96, Evalue=8e-20,
Organism=Drosophila melanogaster, GI18859661, Length=360, Percent_Identity=26.6666666666667, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI21356947, Length=522, Percent_Identity=22.7969348659004, Blast_Score=75, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: NA

Molecular weight: Translated: 54155; Mature: 54155

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLAQLVRGVLQLQPDAEAIEHGGSWWTWSDLEQVIDRLDAMLNEAGLGAGVRVGGLLRN
CCHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHC
TSSIAAGIIGLVITDRCVVTLTPMLPDERLSADILALRPPAILGCAEDWARPAILAAARE
HHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEECCCCEEECHHHHCCHHHHHHHHH
IGCLGLELTGDRSDPVRLVPGLETVAGSDLRRDAPGIAVEMLTSGTTGAPKRVPLKARTL
HCEEEEEEECCCCCCEEECCCCHHHCCCCHHCCCCCCEEEEEECCCCCCCCCCCCHHHHH
EQAVIDAGVYDNRRPDDPPKLRGGVQILNAPFAHISGVFGLFNCVAAGRKSCLLGRFTVE
HHHHHHCCCCCCCCCCCCHHHHCCCCEECCCHHHHHHHHHHHHHHHHCCHHHEEEHHHHH
SWVDAVRRHRPKVAGAPPSALRMILDADVPKEDLSSLVAFRAGTAPLDPDLGDAFFERYG
HHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
IPVLQNYGATEFAGGVAGWTLADFKAHHKDKRGSVGRMNPGCHARIVDPETGEILPFGTE
CCHHHCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCC
GLLELKADHLGDGDWFRTTDLAVLDPDNFLWIKGRFDNAIIRGGFKVFPDDVVRALEQHP
CHHHHHHHHCCCCCCEEECCEEEECCCCEEEEEECCCCEEEECCCEECCHHHHHHHHHCC
SIREAAVVDVPDPRLGQVPVAAYIVKSGASAPAEEELRAFLRERLLPYQVPAQLKALQEM
CCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC
PRTPSLKVSQPELRKLFTGPLAA
CCCCCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MNLAQLVRGVLQLQPDAEAIEHGGSWWTWSDLEQVIDRLDAMLNEAGLGAGVRVGGLLRN
CCHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHC
TSSIAAGIIGLVITDRCVVTLTPMLPDERLSADILALRPPAILGCAEDWARPAILAAARE
HHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEECCCCEEECHHHHCCHHHHHHHHH
IGCLGLELTGDRSDPVRLVPGLETVAGSDLRRDAPGIAVEMLTSGTTGAPKRVPLKARTL
HCEEEEEEECCCCCCEEECCCCHHHCCCCHHCCCCCCEEEEEECCCCCCCCCCCCHHHHH
EQAVIDAGVYDNRRPDDPPKLRGGVQILNAPFAHISGVFGLFNCVAAGRKSCLLGRFTVE
HHHHHHCCCCCCCCCCCCHHHHCCCCEECCCHHHHHHHHHHHHHHHHCCHHHEEEHHHHH
SWVDAVRRHRPKVAGAPPSALRMILDADVPKEDLSSLVAFRAGTAPLDPDLGDAFFERYG
HHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
IPVLQNYGATEFAGGVAGWTLADFKAHHKDKRGSVGRMNPGCHARIVDPETGEILPFGTE
CCHHHCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCC
GLLELKADHLGDGDWFRTTDLAVLDPDNFLWIKGRFDNAIIRGGFKVFPDDVVRALEQHP
CHHHHHHHHCCCCCCEEECCEEEECCCCEEEEEECCCCEEEECCCEECCHHHHHHHHHCC
SIREAAVVDVPDPRLGQVPVAAYIVKSGASAPAEEELRAFLRERLLPYQVPAQLKALQEM
CCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC
PRTPSLKVSQPELRKLFTGPLAA
CCCCCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]