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The map label for this gene is soxR [H]

Identifier: 197105982

GI number: 197105982

Start: 2895435

End: 2896427

Strand: Direct

Name: soxR [H]

Synonym: PHZ_c2521

Alternate gene names: 197105982

Gene position: 2895435-2896427 (Clockwise)

Preceding gene: 197105977

Following gene: 197105983

Centisome position: 72.45

GC content: 72.41

Gene sequence:

>993_bases
TTGGGGTTCGATCCGAGACTCGCCGTCACCTTCGCGGTCGTGGCCGAGGAGCTGTCGTTCACCCGCGCCGCCGAACGGCT
CGGCGTGGCGCAGCCCTGGGTGTCGGAACAGATCCGCCGTCTCGAGGACCGCCTGCAGCTGCGCCTGCTCGCGCGCACGT
CGCGGCACACTGAACTCACCGCCGAAGGCCGCGCCTTCCTGCCCTACGCCCAGGCGCTCGCCCAGGCGAACGAGGCGGCG
CAGCGGTGGGCGCGCGACCTGCGGTCGGCTCACGGCGTCCTACGCCTCGGCGCCGTCGATTTCGTCAACGCCTATCCGGA
GCGCTCCGCGCTGATCGAGAGCTTCCTCTCGGCAGAGCCCCAGGTGGACCTGCAGATCGTCAACGGCCCCGCGGACGACC
TGCTGCGGAGGCTGGCGCAAGCCGAGCTGGACGCGGTCATCGCCTTCGATACATCGGCGGCCGATCACCCCAGGATCCGG
CCGGCCGCCCTGATCTGCCAGAGGCTCGCGGGCGTGCTCGCGCCGCAGGAGCACCCCATAGCCTCCGGCGCCTCGGCCCG
CCTGAGCGACCTGGCGGGATGCGTCGTGGTCACATCCCCGGGCCGCTCGGATCCCGTCGCGCTCCGCGCCACCTGGGACG
CCCTCTCCCGCCACGGGGCGCAGCTGTTCCCCGCGCCCGAGGCGAACCGGGCCACGATCGAGAACCTCGCCCGCGCGCGT
CGCTGGTCTTGCCTGCGATGGACGACGAACGAGGAGCCCCGCCAGACCTTCGGCGACATGGTTTTCCTGCCGCTCGAGGG
GACGCCGCTGCGCCTGCAGCTGGCGGTCCTGACCGTCGAGGGCAAGCGCGGCAACCCCCTGGTCGGCCAGCTCTGCCGCC
TCGCGCAGGAGCTCCGCGGGGCGGCTGACCCTAGCGAACAACAAGCCCGCGGGCCCGCCCCCATCCAGAGGACCCATGAT
CAAGCTCACCTTCTGCCTCCACCGCCGTCCTGA

Upstream 100 bases:

>100_bases
GCTGATGATCAAATATATTTATATAATAGAACTATTTCCAAATCCGATGGATGCGATATGGATGACGTGGGGGCGCTACA
CAGGCTGACTGGAGGCGCGT

Downstream 100 bases:

>100_bases
ACTCAGCCGCGAGGCGTTCCAGGACTATTGGCGAAACACCCACGCGCCCCTGGTGCGCAGCGTCGCCGAAACGCTCCGCA
TTCGCCGATATGTGCAGGTC

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MGFDPRLAVTFAVVAEELSFTRAAERLGVAQPWVSEQIRRLEDRLQLRLLARTSRHTELTAEGRAFLPYAQALAQANEAA
QRWARDLRSAHGVLRLGAVDFVNAYPERSALIESFLSAEPQVDLQIVNGPADDLLRRLAQAELDAVIAFDTSAADHPRIR
PAALICQRLAGVLAPQEHPIASGASARLSDLAGCVVVTSPGRSDPVALRATWDALSRHGAQLFPAPEANRATIENLARAR
RWSCLRWTTNEEPRQTFGDMVFLPLEGTPLRLQLAVLTVEGKRGNPLVGQLCRLAQELRGAADPSEQQARGPAPIQRTHD
QAHLLPPPPS

Sequences:

>Translated_330_residues
MGFDPRLAVTFAVVAEELSFTRAAERLGVAQPWVSEQIRRLEDRLQLRLLARTSRHTELTAEGRAFLPYAQALAQANEAA
QRWARDLRSAHGVLRLGAVDFVNAYPERSALIESFLSAEPQVDLQIVNGPADDLLRRLAQAELDAVIAFDTSAADHPRIR
PAALICQRLAGVLAPQEHPIASGASARLSDLAGCVVVTSPGRSDPVALRATWDALSRHGAQLFPAPEANRATIENLARAR
RWSCLRWTTNEEPRQTFGDMVFLPLEGTPLRLQLAVLTVEGKRGNPLVGQLCRLAQELRGAADPSEQQARGPAPIQRTHD
QAHLLPPPPS
>Mature_329_residues
GFDPRLAVTFAVVAEELSFTRAAERLGVAQPWVSEQIRRLEDRLQLRLLARTSRHTELTAEGRAFLPYAQALAQANEAAQ
RWARDLRSAHGVLRLGAVDFVNAYPERSALIESFLSAEPQVDLQIVNGPADDLLRRLAQAELDAVIAFDTSAADHPRIRP
AALICQRLAGVLAPQEHPIASGASARLSDLAGCVVVTSPGRSDPVALRATWDALSRHGAQLFPAPEANRATIENLARARR
WSCLRWTTNEEPRQTFGDMVFLPLEGTPLRLQLAVLTVEGKRGNPLVGQLCRLAQELRGAADPSEQQARGPAPIQRTHDQ
AHLLPPPPS

Specific function: Transcriptional repressor of soxA gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=196, Percent_Identity=33.6734693877551, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=182, Percent_Identity=34.0659340659341, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787589, Length=122, Percent_Identity=36.0655737704918, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788887, Length=198, Percent_Identity=31.8181818181818, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367136, Length=236, Percent_Identity=30.9322033898305, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786401, Length=213, Percent_Identity=29.1079812206573, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36062; Mature: 35931

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFDPRLAVTFAVVAEELSFTRAAERLGVAQPWVSEQIRRLEDRLQLRLLARTSRHTELT
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEC
AEGRAFLPYAQALAQANEAAQRWARDLRSAHGVLRLGAVDFVNAYPERSALIESFLSAEP
CCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCEEHCCHHHHHHHCCHHHHHHHHHHCCCC
QVDLQIVNGPADDLLRRLAQAELDAVIAFDTSAADHPRIRPAALICQRLAGVLAPQEHPI
CEEEEEECCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
ASGASARLSDLAGCVVVTSPGRSDPVALRATWDALSRHGAQLFPAPEANRATIENLARAR
CCCCHHHHHHHCCEEEEECCCCCCCEEEEEEHHHHHHCCCEECCCCCCCHHHHHHHHHHH
RWSCLRWTTNEEPRQTFGDMVFLPLEGTPLRLQLAVLTVEGKRGNPLVGQLCRLAQELRG
HCCEEECCCCCCHHHHHCCEEEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHCC
AADPSEQQARGPAPIQRTHDQAHLLPPPPS
CCCCCHHHCCCCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GFDPRLAVTFAVVAEELSFTRAAERLGVAQPWVSEQIRRLEDRLQLRLLARTSRHTELT
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEC
AEGRAFLPYAQALAQANEAAQRWARDLRSAHGVLRLGAVDFVNAYPERSALIESFLSAEP
CCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCEEHCCHHHHHHHCCHHHHHHHHHHCCCC
QVDLQIVNGPADDLLRRLAQAELDAVIAFDTSAADHPRIRPAALICQRLAGVLAPQEHPI
CEEEEEECCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
ASGASARLSDLAGCVVVTSPGRSDPVALRATWDALSRHGAQLFPAPEANRATIENLARAR
CCCCHHHHHHHCCEEEEECCCCCCCEEEEEEHHHHHHCCCEECCCCCCCHHHHHHHHHHH
RWSCLRWTTNEEPRQTFGDMVFLPLEGTPLRLQLAVLTVEGKRGNPLVGQLCRLAQELRG
HCCEEECCCCCCHHHHHCCEEEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHCC
AADPSEQQARGPAPIQRTHDQAHLLPPPPS
CCCCCHHHCCCCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA