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The map label for this gene is kduI

Identifier: 197105912

GI number: 197105912

Start: 2802689

End: 2803531

Strand: Reverse

Name: kduI

Synonym: PHZ_c2451

Alternate gene names: 197105912

Gene position: 2803531-2802689 (Counterclockwise)

Preceding gene: 197105913

Following gene: 197105911

Centisome position: 70.15

GC content: 67.73

Gene sequence:

>843_bases
GTGTACGTGTTCAAGCGCATCTACCACGCGACCCACCCCGACATGATGGAGGGCGTCGACAACGAGACCCTGCGCCAGCG
CTACCTGATCGACGGGCTGTTCCAGCCGGGCCAGATCGTCCTCAACTACACCCACTACGAGCGCTTCGTGATCGGGGGCG
CCGCGCCTCACGGCGGGGCGGTCCGCCTGCCCGACCAGACCGAGCCCGAGAGCGCCGCCGGCCATCCGTTCCTGGAGCGC
CGCGAACTGGGGGTGGTGAACGTGGCCGACGTCGCCGGGACCGTCACCGTCGACGGCCAGGCCTACGCGCTCGCGCCGAA
GGACTGCCTCTATGTCCCGATGGGCACGAAGGACGTGACGTTCGAAGGCGACGGCGCGCGCTTCTACCTGGTCTCCACCC
CCGCCCACGCCCGGTTCGAGACCCGGCACCTGTCGATCGCCGACGCCGTGCCGCTGGAGCGCGGCGGGCTCGAAACCTCG
AACGAGCGGACCATCTACCAGCTCGTGGTGCCGGCCACCTGCAAGTCGGCCCAGCTGCTGATGGGCCTGACGATCCTGAA
GACCGGCAGCGTCTGGAACACCATGCCGCCCCACCTCCACGACCGGCGCAGCGAGGTCTACTTCTACTTCGATCTCGGCA
AGGACGACCGGGTCTTCCACTTCATGGGCGAGCCGGACAAGGCCCGGCACATCATCATGGCCAACGAGGAGGCGGTGGTC
TCGCCGCCGTGGTCGATCCACATGGGCTCGGGCACCTCGAACTACGCCTTCATCTGGGCGATGGGCGGGGAGAACCTCGA
CTACACCGACATGCGCGTCCTCGACATCTGCCAGCTGAAGTGA

Upstream 100 bases:

>100_bases
CCCACGAGACGGCGGTCGACCTCGCCTACAACCTGCCCAAGCGGGCCTACAAGCTGGACGAGCCGGCCAGGACGCCGGCC
GCCGCCTGACGACAGGAGAC

Downstream 100 bases:

>100_bases
GCCCCGAGATGAATCCTGGCCTCTTCAGCCTTCAGGGCAAGGTCGCCCTGGTCACCGGCGCCAACACCGGGCTCGGCCAG
GGGATCGCCGTGGGCCTGGC

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MYVFKRIYHATHPDMMEGVDNETLRQRYLIDGLFQPGQIVLNYTHYERFVIGGAAPHGGAVRLPDQTEPESAAGHPFLER
RELGVVNVADVAGTVTVDGQAYALAPKDCLYVPMGTKDVTFEGDGARFYLVSTPAHARFETRHLSIADAVPLERGGLETS
NERTIYQLVVPATCKSAQLLMGLTILKTGSVWNTMPPHLHDRRSEVYFYFDLGKDDRVFHFMGEPDKARHIIMANEEAVV
SPPWSIHMGSGTSNYAFIWAMGGENLDYTDMRVLDICQLK

Sequences:

>Translated_280_residues
MYVFKRIYHATHPDMMEGVDNETLRQRYLIDGLFQPGQIVLNYTHYERFVIGGAAPHGGAVRLPDQTEPESAAGHPFLER
RELGVVNVADVAGTVTVDGQAYALAPKDCLYVPMGTKDVTFEGDGARFYLVSTPAHARFETRHLSIADAVPLERGGLETS
NERTIYQLVVPATCKSAQLLMGLTILKTGSVWNTMPPHLHDRRSEVYFYFDLGKDDRVFHFMGEPDKARHIIMANEEAVV
SPPWSIHMGSGTSNYAFIWAMGGENLDYTDMRVLDICQLK
>Mature_280_residues
MYVFKRIYHATHPDMMEGVDNETLRQRYLIDGLFQPGQIVLNYTHYERFVIGGAAPHGGAVRLPDQTEPESAAGHPFLER
RELGVVNVADVAGTVTVDGQAYALAPKDCLYVPMGTKDVTFEGDGARFYLVSTPAHARFETRHLSIADAVPLERGGLETS
NERTIYQLVVPATCKSAQLLMGLTILKTGSVWNTMPPHLHDRRSEVYFYFDLGKDDRVFHFMGEPDKARHIIMANEEAVV
SPPWSIHMGSGTSNYAFIWAMGGENLDYTDMRVLDICQLK

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family

Homologues:

Organism=Escherichia coli, GI1789209, Length=278, Percent_Identity=41.726618705036, Blast_Score=229, Evalue=1e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDUI_PHEZH (B4RGF4)

Other databases:

- EMBL:   CP000747
- RefSeq:   YP_002131289.1
- GeneID:   6791972
- GenomeReviews:   CP000747_GR
- KEGG:   pzu:PHZ_c2451
- HOGENOM:   HBG301328
- OMA:   MPAHTHD
- ProtClustDB:   PRK00924
- HAMAP:   MF_00687
- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120
- PIRSF:   PIRSF006625

Pfam domain/function: PF04962 KduI; SSF51182 RmlC_like_cupin

EC number: =5.3.1.17

Molecular weight: Translated: 31324; Mature: 31324

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVFKRIYHATHPDMMEGVDNETLRQRYLIDGLFQPGQIVLNYTHYERFVIGGAAPHGGA
CHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEECCCCCCCE
VRLPDQTEPESAAGHPFLERRELGVVNVADVAGTVTVDGQAYALAPKDCLYVPMGTKDVT
EECCCCCCCCCCCCCCCHHHHCCCEEEEHHCCEEEEECCCEEEECCCCEEEEECCCCEEE
FEGDGARFYLVSTPAHARFETRHLSIADAVPLERGGLETSNERTIYQLVVPATCKSAQLL
EECCCEEEEEEECCCCCEEEEEEEEEHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHE
MGLTILKTGSVWNTMPPHLHDRRSEVYFYFDLGKDDRVFHFMGEPDKARHIIMANEEAVV
EEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCEEE
SPPWSIHMGSGTSNYAFIWAMGGENLDYTDMRVLDICQLK
CCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MYVFKRIYHATHPDMMEGVDNETLRQRYLIDGLFQPGQIVLNYTHYERFVIGGAAPHGGA
CHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEECCCCCCCE
VRLPDQTEPESAAGHPFLERRELGVVNVADVAGTVTVDGQAYALAPKDCLYVPMGTKDVT
EECCCCCCCCCCCCCCCHHHHCCCEEEEHHCCEEEEECCCEEEECCCCEEEEECCCCEEE
FEGDGARFYLVSTPAHARFETRHLSIADAVPLERGGLETSNERTIYQLVVPATCKSAQLL
EECCCEEEEEEECCCCCEEEEEEEEEHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHE
MGLTILKTGSVWNTMPPHLHDRRSEVYFYFDLGKDDRVFHFMGEPDKARHIIMANEEAVV
EEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCEEE
SPPWSIHMGSGTSNYAFIWAMGGENLDYTDMRVLDICQLK
CCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA