Click here to switch to the map view.

The map label for this gene is xynB [H]

Identifier: 197105907

GI number: 197105907

Start: 2797058

End: 2798029

Strand: Direct

Name: xynB [H]

Synonym: PHZ_c2446

Alternate gene names: 197105907

Gene position: 2797058-2798029 (Clockwise)

Preceding gene: 197105903

Following gene: 197105908

Centisome position: 69.99

GC content: 76.95

Gene sequence:

>972_bases
ATGACCAAGCTCGACCGCCGGGCGCTTCTGGGCGCCGCCCTTTTCGCCTCCGCGGCCGCCGCCGCCCAAGCCCGCGAGCC
CGCCGACCCGGCAGAGGTCGTGCGGCTGTGGCCGGGCCGCCCGCCCGGCGCGCCCGGTGTCCTGCCGGTCACGCAGGTGC
GGGACCGGATCGCGACGTCCGGCTTCCAGGACCGCATCGCCACCAGCATCGGCGAGCCGCTGATGACCGTCTTCCGTCCC
GCCCGGCCGAACGGGGCGGCGGTGCTGGTGATCCCCGGCGGCGGCTACGTCCGGGTGGTCATCGACAAGGAGGGGTTCGA
GACCGCGCGTCGCCTGGCGGACGCGGGGATCACCGCCTTCGTGCTGCGCTACCGCCTGCCCGGCGACGGCTGGGCGAGCC
CCGCCGACGTTCCCCTGCAGGACGCCCAGCGCGCCGTGCGCCTGATCCGCGCCGGCGCGGCCGGCTGGGGGATCGATCCG
TCGCGCGTGGCGGCGATGGGCTTCTCGGCCGGCGGGCACGTGGCCGCCTCGCTCAGCACGCGCCACGCCGCCGCCGTCTA
TCGGCCCGTGGACGCGGCGGACGCCCAGAGCGCCCGCCCGGACCTGGCGGCGCTGATCTATCCGGTGATCGACATGGCGC
CGCCCAACGCGCACCCGGGCTCGCGCGCGCAGCTGCTGGGGCCGGACCCGTCCTCCGAGGCCGAGGCCGCCTACTCGCCG
CACCGCCACGTCGGCGCGCACGTCCCGCCGACCTTCCTGCTGCACGCCATGGACGACGACTCGGTGCCGGTGGAGAACAG
CCTCGCCTACCTGGCGGCGCTGCGGGCGGCGAAGGTCCCCGCCGAGGCGCACCTGTTCGAGGAAGGCGGCCACGGCTTCG
GCCTGCGCCTGATCCAGGGCAACCCGGCCGCGGCCTGGCCGGACCTGTTCCTGGCCTGGGCCGCGCGGCGGGGGCTCCTC
AAGGCCGGCTGA

Upstream 100 bases:

>100_bases
CCCCTTCTCGTTGGGGGCGTGCTTAGGGGCCGCGGTTGTCAGGACGGTCACGCTTGCGTGTCGGTTTGTTGAAGGCGGCA
GCGATGCTACCGGTGGCGCC

Downstream 100 bases:

>100_bases
CCGGGGCTATGATACCGGTGTCATAACCGGAGAACGTCCATGCGCTGGCTCCTCGCCGCGGCGCTCGCCGCCCTTTCCCT
CGGACCGGCGCAGGCCGCCG

Product: esterase/lipase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MTKLDRRALLGAALFASAAAAAQAREPADPAEVVRLWPGRPPGAPGVLPVTQVRDRIATSGFQDRIATSIGEPLMTVFRP
ARPNGAAVLVIPGGGYVRVVIDKEGFETARRLADAGITAFVLRYRLPGDGWASPADVPLQDAQRAVRLIRAGAAGWGIDP
SRVAAMGFSAGGHVAASLSTRHAAAVYRPVDAADAQSARPDLAALIYPVIDMAPPNAHPGSRAQLLGPDPSSEAEAAYSP
HRHVGAHVPPTFLLHAMDDDSVPVENSLAYLAALRAAKVPAEAHLFEEGGHGFGLRLIQGNPAAAWPDLFLAWAARRGLL
KAG

Sequences:

>Translated_323_residues
MTKLDRRALLGAALFASAAAAAQAREPADPAEVVRLWPGRPPGAPGVLPVTQVRDRIATSGFQDRIATSIGEPLMTVFRP
ARPNGAAVLVIPGGGYVRVVIDKEGFETARRLADAGITAFVLRYRLPGDGWASPADVPLQDAQRAVRLIRAGAAGWGIDP
SRVAAMGFSAGGHVAASLSTRHAAAVYRPVDAADAQSARPDLAALIYPVIDMAPPNAHPGSRAQLLGPDPSSEAEAAYSP
HRHVGAHVPPTFLLHAMDDDSVPVENSLAYLAALRAAKVPAEAHLFEEGGHGFGLRLIQGNPAAAWPDLFLAWAARRGLL
KAG
>Mature_322_residues
TKLDRRALLGAALFASAAAAAQAREPADPAEVVRLWPGRPPGAPGVLPVTQVRDRIATSGFQDRIATSIGEPLMTVFRPA
RPNGAAVLVIPGGGYVRVVIDKEGFETARRLADAGITAFVLRYRLPGDGWASPADVPLQDAQRAVRLIRAGAAGWGIDPS
RVAAMGFSAGGHVAASLSTRHAAAVYRPVDAADAQSARPDLAALIYPVIDMAPPNAHPGSRAQLLGPDPSSEAEAAYSPH
RHVGAHVPPTFLLHAMDDDSVPVENSLAYLAALRAAKVPAEAHLFEEGGHGFGLRLIQGNPAAAWPDLFLAWAARRGLLK
AG

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 33745; Mature: 33614

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLDRRALLGAALFASAAAAAQAREPADPAEVVRLWPGRPPGAPGVLPVTQVRDRIATS
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEECCCCCCCCCCCCCHHHHHHHHHHC
GFQDRIATSIGEPLMTVFRPARPNGAAVLVIPGGGYVRVVIDKEGFETARRLADAGITAF
CHHHHHHHHHCHHHHHHHCCCCCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHCCHHEE
VLRYRLPGDGWASPADVPLQDAQRAVRLIRAGAAGWGIDPSRVAAMGFSAGGHVAASLST
EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEECHH
RHAAAVYRPVDAADAQSARPDLAALIYPVIDMAPPNAHPGSRAQLLGPDPSSEAEAAYSP
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHCCCC
HRHVGAHVPPTFLLHAMDDDSVPVENSLAYLAALRAAKVPAEAHLFEEGGHGFGLRLIQG
CCCCCCCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEC
NPAAAWPDLFLAWAARRGLLKAG
CCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TKLDRRALLGAALFASAAAAAQAREPADPAEVVRLWPGRPPGAPGVLPVTQVRDRIATS
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEECCCCCCCCCCCCCHHHHHHHHHHC
GFQDRIATSIGEPLMTVFRPARPNGAAVLVIPGGGYVRVVIDKEGFETARRLADAGITAF
CHHHHHHHHHCHHHHHHHCCCCCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHCCHHEE
VLRYRLPGDGWASPADVPLQDAQRAVRLIRAGAAGWGIDPSRVAAMGFSAGGHVAASLST
EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEECHH
RHAAAVYRPVDAADAQSARPDLAALIYPVIDMAPPNAHPGSRAQLLGPDPSSEAEAAYSP
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHCCCC
HRHVGAHVPPTFLLHAMDDDSVPVENSLAYLAALRAAKVPAEAHLFEEGGHGFGLRLIQG
CCCCCCCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEC
NPAAAWPDLFLAWAARRGLLKAG
CCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]