Definition Phenylobacterium zucineum HLK1, complete genome.
Accession NC_011144
Length 3,996,255

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The map label for this gene is fyuA [H]

Identifier: 197105869

GI number: 197105869

Start: 2740955

End: 2743150

Strand: Reverse

Name: fyuA [H]

Synonym: PHZ_c2408

Alternate gene names: 197105869

Gene position: 2743150-2740955 (Counterclockwise)

Preceding gene: 197105870

Following gene: 197105868

Centisome position: 68.64

GC content: 66.17

Gene sequence:

>2196_bases
ATGAGCAACGTCGTTTCTAAGGGGCGCCTGCTGCTGCTGGCGACCGCCGCCGCCTGCTTGCCTGCGGCGGTCCAGGCGCA
GGCTCCCGCCACAGGAGCCGCGGCCCAGACGGAGGCGAACGCCGCCGCCAGCGAGACCGCCCTCGACGTGGTCGTCGTCA
CCGCGCAACGGCGCGTGCAGCGCGGTAATGACGTCGGCATCGCGATGAATGTGGTCTCGGGCGGCGAACTGGAAGCCGCT
GGCGTGAGACAGGTGGTCGATCTGGCGACCCAGACGACGAATGTGCAGATCAAGAACACGCTCGGCGGCAGCGTGCCGAA
CGTGACGATCCGCGGCATCGGCCTGAACGACTACGCCTCGAACAACAATCCCGCCGCGGGCGTCTACGTCGACAACGTGT
ACCTCGTCTCGCCGGCGATGCTTTCGTTCGGCCTCTTCGATGTCGATCGGGTTGAGGTGCTGAAGGGGCCGCAAGGCGAT
CTCTACGGCCGCAACACCACGGCCGGCGCCATCAACATCATCAGCAAGCGACCGACCGAGGCCGCCGACGCCGAGTTTCA
GGTCGGCTACGGGACCTACGACAGCTGGCTGCTGAACGGAGCCGTCGGCGGCCCCCTCGCGCCCACCCTGGCTGGCCGCT
TCGCCTTCACCACCGAGCAGCAGGCCTCAGGCTGGCAGCGCAACTACGTGACGGGCGAGCGCAACGGCAGGATCGACCGA
ACCGCGGCGCGCCTGCATCTGGAATGGACCCCGTCAGAGGCGGTGACCGCTCTGCTCAGCGCGCACGCCGGTTACGACCG
TTCGGACCAGTCGCTGTACAAGGTCGACAATGTGCTGACGACCGACGAGGACGCCTTCGCCGGGCGGCCCCGGATCGCCG
GCGCCAGCAACAATCCCGAGGTCGATCTGAAATCGGCCGGGGTTTCGCTGACGGTGGACTGGGCCCTGGCGGAAGGCCTG
ACCCTCACGTCGATTTCGGCCTACGAGCGCTTCACTCGCGTGGACGTCGGCGACCAGGACGGGACGCGGCTGCGGCAGCT
CGACAGCACCTTCCGCAACCGCATCAATCAGACCTCGCAGGAGCTGCGGCTCGCCTATTCGCGAGAGGCGCTGACCCTGA
TCGGCGGCGCCTACTACTCGCGAGACACCGTCGCCACCCAGGACAGCTATGACGCGCCCGATCTGCTTCCGCTGCTTGGC
CTGAGCGGCATCTCGACGATCGGCAACCGCTACCACCAGCGCACCAAGGCCTATGCGGTCTTCCTGCACGGCGAGTGGGA
GATCGTCCCGAAGCTGACCCTGGTGAGCGGCATCCGCTACACGAAGGAGCGCAAGAGGCTCGATGATGCGACAACCTTCC
TGGGGCCGACCGGCGGCGGGGAAGTGGATGTCTTCGCGCCCGTCGAGAACTTCTTCCGGACCTCGAACGTCTCGGGGAAG
CTCGGCGTCAACTACAAGCTTCTGGATGACACCCTGCTCTATGCGAGCGTCAGCCGCGGCTTCAAATCGGGCGGTTTCCA
GGGGCAGCTGACGTTCGATCCCTCGGCCCTGACGCCCTTCGACGATGAAAAGCTCACCGCCTACGAGGTGGGCGTGAAGA
GCCGGGTCCTTCCGAACCTTCAGGTCAACGCCTCGGCGTTCAACTACGACTACGAGGACTCGCAGTTCTACGGGCCGCTC
TTCGACTCTCCGGTGGGTGTCCTGTTCGGCATCACCAACGTGGGCGACGCCCGGGTTCGTGGTGTCGAGGGCGACGTGAC
CTGGAGACCTGTGGCCGGCCTCGATCTGCGCGTGGGCGCCGGCTACATCGACACGGAGATCACGAGGTCCATCGTGCCTG
GCGTGGCGAAGGGCAGCCGACTGCCGAACGCCCCCGAGTTCACGCTCAACGGTTCGGTGAAATACGCCTGGACCGTGACC
GACGACGCGGAAGCGGACATCTCCCTCTCGGCCGCCTATCAGAGCCGCGTCGCCTTCGACATCGTCCGCAATCCGCCGGA
AGCTCGCGAGGGCGGCTACACCACCGTGAACGGTGAAGCTGGGCTGAACCTCGGTGAGAATTTCCGGATCGCGGTCTGGG
GCAAGAACCTGTTCAACGAACTGCATCGCACCCAGGCCCTCTTCACGAGCGCCGGCTGGAGCGAACAGTACAGTGCGCCG
CGCACCTTCGGCGTGAAGCTGTCCTGGCAGAACTGA

Upstream 100 bases:

>100_bases
CAAGCGCACCTACGCCACACCCAGAGCCAAAGAGATCATCGGCTTCAACATTCCAAGGACCGCCGTCTGAGCGGATCTTC
TCGGGGAGGGGACTTCAATC

Downstream 100 bases:

>100_bases
TCGACACCTTGAGCCGGGGCGGGGCGTTGCTCCGCCCCGGCCACAGGGCTCGCCGCTCGGGCGCGATATGAAGCGAGCGG
GGCCCAAGGCCCTTAGCTAG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: IPR65; IRPC [H]

Number of amino acids: Translated: 731; Mature: 730

Protein sequence:

>731_residues
MSNVVSKGRLLLLATAAACLPAAVQAQAPATGAAAQTEANAAASETALDVVVVTAQRRVQRGNDVGIAMNVVSGGELEAA
GVRQVVDLATQTTNVQIKNTLGGSVPNVTIRGIGLNDYASNNNPAAGVYVDNVYLVSPAMLSFGLFDVDRVEVLKGPQGD
LYGRNTTAGAINIISKRPTEAADAEFQVGYGTYDSWLLNGAVGGPLAPTLAGRFAFTTEQQASGWQRNYVTGERNGRIDR
TAARLHLEWTPSEAVTALLSAHAGYDRSDQSLYKVDNVLTTDEDAFAGRPRIAGASNNPEVDLKSAGVSLTVDWALAEGL
TLTSISAYERFTRVDVGDQDGTRLRQLDSTFRNRINQTSQELRLAYSREALTLIGGAYYSRDTVATQDSYDAPDLLPLLG
LSGISTIGNRYHQRTKAYAVFLHGEWEIVPKLTLVSGIRYTKERKRLDDATTFLGPTGGGEVDVFAPVENFFRTSNVSGK
LGVNYKLLDDTLLYASVSRGFKSGGFQGQLTFDPSALTPFDDEKLTAYEVGVKSRVLPNLQVNASAFNYDYEDSQFYGPL
FDSPVGVLFGITNVGDARVRGVEGDVTWRPVAGLDLRVGAGYIDTEITRSIVPGVAKGSRLPNAPEFTLNGSVKYAWTVT
DDAEADISLSAAYQSRVAFDIVRNPPEAREGGYTTVNGEAGLNLGENFRIAVWGKNLFNELHRTQALFTSAGWSEQYSAP
RTFGVKLSWQN

Sequences:

>Translated_731_residues
MSNVVSKGRLLLLATAAACLPAAVQAQAPATGAAAQTEANAAASETALDVVVVTAQRRVQRGNDVGIAMNVVSGGELEAA
GVRQVVDLATQTTNVQIKNTLGGSVPNVTIRGIGLNDYASNNNPAAGVYVDNVYLVSPAMLSFGLFDVDRVEVLKGPQGD
LYGRNTTAGAINIISKRPTEAADAEFQVGYGTYDSWLLNGAVGGPLAPTLAGRFAFTTEQQASGWQRNYVTGERNGRIDR
TAARLHLEWTPSEAVTALLSAHAGYDRSDQSLYKVDNVLTTDEDAFAGRPRIAGASNNPEVDLKSAGVSLTVDWALAEGL
TLTSISAYERFTRVDVGDQDGTRLRQLDSTFRNRINQTSQELRLAYSREALTLIGGAYYSRDTVATQDSYDAPDLLPLLG
LSGISTIGNRYHQRTKAYAVFLHGEWEIVPKLTLVSGIRYTKERKRLDDATTFLGPTGGGEVDVFAPVENFFRTSNVSGK
LGVNYKLLDDTLLYASVSRGFKSGGFQGQLTFDPSALTPFDDEKLTAYEVGVKSRVLPNLQVNASAFNYDYEDSQFYGPL
FDSPVGVLFGITNVGDARVRGVEGDVTWRPVAGLDLRVGAGYIDTEITRSIVPGVAKGSRLPNAPEFTLNGSVKYAWTVT
DDAEADISLSAAYQSRVAFDIVRNPPEAREGGYTTVNGEAGLNLGENFRIAVWGKNLFNELHRTQALFTSAGWSEQYSAP
RTFGVKLSWQN
>Mature_730_residues
SNVVSKGRLLLLATAAACLPAAVQAQAPATGAAAQTEANAAASETALDVVVVTAQRRVQRGNDVGIAMNVVSGGELEAAG
VRQVVDLATQTTNVQIKNTLGGSVPNVTIRGIGLNDYASNNNPAAGVYVDNVYLVSPAMLSFGLFDVDRVEVLKGPQGDL
YGRNTTAGAINIISKRPTEAADAEFQVGYGTYDSWLLNGAVGGPLAPTLAGRFAFTTEQQASGWQRNYVTGERNGRIDRT
AARLHLEWTPSEAVTALLSAHAGYDRSDQSLYKVDNVLTTDEDAFAGRPRIAGASNNPEVDLKSAGVSLTVDWALAEGLT
LTSISAYERFTRVDVGDQDGTRLRQLDSTFRNRINQTSQELRLAYSREALTLIGGAYYSRDTVATQDSYDAPDLLPLLGL
SGISTIGNRYHQRTKAYAVFLHGEWEIVPKLTLVSGIRYTKERKRLDDATTFLGPTGGGEVDVFAPVENFFRTSNVSGKL
GVNYKLLDDTLLYASVSRGFKSGGFQGQLTFDPSALTPFDDEKLTAYEVGVKSRVLPNLQVNASAFNYDYEDSQFYGPLF
DSPVGVLFGITNVGDARVRGVEGDVTWRPVAGLDLRVGAGYIDTEITRSIVPGVAKGSRLPNAPEFTLNGSVKYAWTVTD
DAEADISLSAAYQSRVAFDIVRNPPEAREGGYTTVNGEAGLNLGENFRIAVWGKNLFNELHRTQALFTSAGWSEQYSAPR
TFGVKLSWQN

Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 78638; Mature: 78507

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVVSKGRLLLLATAAACLPAAVQAQAPATGAAAQTEANAAASETALDVVVVTAQRRVQ
CCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCEEEEEEEECHHHHH
RGNDVGIAMNVVSGGELEAAGVRQVVDLATQTTNVQIKNTLGGSVPNVTIRGIGLNDYAS
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCC
NNNPAAGVYVDNVYLVSPAMLSFGLFDVDRVEVLKGPQGDLYGRNTTAGAINIISKRPTE
CCCCEEEEEECCEEEECHHHHHCCCCCCCHHHEECCCCCCCCCCCCCCCEEEEECCCCCC
AADAEFQVGYGTYDSWLLNGAVGGPLAPTLAGRFAFTTEQQASGWQRNYVTGERNGRIDR
CCCCEEEECCCCHHHHEECCCCCCCCCHHHCCCEEEECCHHHCCCCCCCCCCCCCCCEEE
TAARLHLEWTPSEAVTALLSAHAGYDRSDQSLYKVDNVLTTDEDAFAGRPRIAGASNNPE
EEEEEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHCCEEECCCHHHCCCCCCCCCCCCCC
VDLKSAGVSLTVDWALAEGLTLTSISAYERFTRVDVGDQDGTRLRQLDSTFRNRINQTSQ
EEEECCCEEEEEEEHHHCCCEEEEHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH
ELRLAYSREALTLIGGAYYSRDTVATQDSYDAPDLLPLLGLSGISTIGNRYHQRTKAYAV
HHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCEEEEE
FLHGEWEIVPKLTLVSGIRYTKERKRLDDATTFLGPTGGGEVDVFAPVENFFRTSNVSGK
EEECCEEEEEEEEHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHCCCCCE
LGVNYKLLDDTLLYASVSRGFKSGGFQGQLTFDPSALTPFDDEKLTAYEVGVKSRVLPNL
ECCEEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCHHHCCCCC
QVNASAFNYDYEDSQFYGPLFDSPVGVLFGITNVGDARVRGVEGDVTWRPVAGLDLRVGA
EEECEEECCCCCCCCEECCCCCCCCEEEEEECCCCCCEEECCCCCEEEEECCCEEEEECC
GYIDTEITRSIVPGVAKGSRLPNAPEFTLNGSVKYAWTVTDDAEADISLSAAYQSRVAFD
CCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCEEEEEHHHHHEEEE
IVRNPPEAREGGYTTVNGEAGLNLGENFRIAVWGKNLFNELHRTQALFTSAGWSEQYSAP
ECCCCCCCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCHHCCCC
RTFGVKLSWQN
CEEEEEEEECC
>Mature Secondary Structure 
SNVVSKGRLLLLATAAACLPAAVQAQAPATGAAAQTEANAAASETALDVVVVTAQRRVQ
CCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCEEEEEEEECHHHHH
RGNDVGIAMNVVSGGELEAAGVRQVVDLATQTTNVQIKNTLGGSVPNVTIRGIGLNDYAS
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCC
NNNPAAGVYVDNVYLVSPAMLSFGLFDVDRVEVLKGPQGDLYGRNTTAGAINIISKRPTE
CCCCEEEEEECCEEEECHHHHHCCCCCCCHHHEECCCCCCCCCCCCCCCEEEEECCCCCC
AADAEFQVGYGTYDSWLLNGAVGGPLAPTLAGRFAFTTEQQASGWQRNYVTGERNGRIDR
CCCCEEEECCCCHHHHEECCCCCCCCCHHHCCCEEEECCHHHCCCCCCCCCCCCCCCEEE
TAARLHLEWTPSEAVTALLSAHAGYDRSDQSLYKVDNVLTTDEDAFAGRPRIAGASNNPE
EEEEEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHCCEEECCCHHHCCCCCCCCCCCCCC
VDLKSAGVSLTVDWALAEGLTLTSISAYERFTRVDVGDQDGTRLRQLDSTFRNRINQTSQ
EEEECCCEEEEEEEHHHCCCEEEEHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH
ELRLAYSREALTLIGGAYYSRDTVATQDSYDAPDLLPLLGLSGISTIGNRYHQRTKAYAV
HHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCEEEEE
FLHGEWEIVPKLTLVSGIRYTKERKRLDDATTFLGPTGGGEVDVFAPVENFFRTSNVSGK
EEECCEEEEEEEEHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHCCCCCE
LGVNYKLLDDTLLYASVSRGFKSGGFQGQLTFDPSALTPFDDEKLTAYEVGVKSRVLPNL
ECCEEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCHHHCCCCC
QVNASAFNYDYEDSQFYGPLFDSPVGVLFGITNVGDARVRGVEGDVTWRPVAGLDLRVGA
EEECEEECCCCCCCCEECCCCCCCCEEEEEECCCCCCEEECCCCCEEEEECCCEEEEECC
GYIDTEITRSIVPGVAKGSRLPNAPEFTLNGSVKYAWTVTDDAEADISLSAAYQSRVAFD
CCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCEEEEEHHHHHEEEE
IVRNPPEAREGGYTTVNGEAGLNLGENFRIAVWGKNLFNELHRTQALFTSAGWSEQYSAP
ECCCCCCCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCHHCCCC
RTFGVKLSWQN
CEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA