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The map label for this gene is rci [H]

Identifier: 197105806

GI number: 197105806

Start: 2657145

End: 2658077

Strand: Direct

Name: rci [H]

Synonym: PHZ_c2344

Alternate gene names: 197105806

Gene position: 2657145-2658077 (Clockwise)

Preceding gene: 197105804

Following gene: 197105808

Centisome position: 66.49

GC content: 64.31

Gene sequence:

>933_bases
ATCGATCGGGGTGATACGCCGCGCTCTTCTCGCGTACAGCGCGTTTCGAGCTTCGCCGACCTGATCGACCTGCACGTCGC
CGACATGAAAGCTGTCGGCCGAGCTCCGGGCCGATCCAAGGACGCCACGCTCGCAATGCTCAAGCGCGAACTCGGCAGCC
TGGACGCTGTCGAACTAGGCCGTGAGCGGCTCATCGCTTTCGGGCGAGCTCGCGCGGCCCAGGGCGCGGGACCCGTCACG
GTCAGCATGGACCTCGGCATGATCCGGCTGGTGATTTCTCACGCGGCCGCAGTTCACGGCCTGCCGCTGTCGCTGGAGGC
CGTTGACCTCGCACGCATCGCGCTCAAGCGGCTAGGTCTTATCGGCAAGAGCAACGAACGAGACAGGCGCCCGACCGAGG
AGGAGATCGAACGGCTCGTCGCCCACTTCAATGACAACCCCCGCCAGGTCATTCCCATGGCGCGGATCATCAGGTTCGCG
ATCGCGACGGCCCTGCGGCAGGAAGAGATCTGCCGGGTCACCTGGGCGGACCTGAACCCGCGCACCAAGATGCTGACAGT
GCGCGATCGAAAAGATCCGCGCGCTAAGAAGGGGAACGATCAGCGAATCCCGCTGCTGGCGGTGTCAGGATACGACGCCC
TGGCGCTCATCGAAGAGCAGCGCGGATGTCGAGGCAACGAAGACGATCGCATTTTCCCCTACTGCCACCGGTCCGCCGGC
ACCGCGTTCACGCGCGCCTGCAAGGAGCTGCAGATCGAGGATCTTCACTTCCACGATTTACGGCATGAGGCGACAAGCCG
GCTATTCGAAGCCGGCTTCACGATCGAGCAGGTGGCGCTCGTCTCGGGGCATAAGGACTGGAAGATGCTGCGCCGATACA
CGCATCTCCGGCCAGAAGCGCTGCATGCCGTGGCCGCGTCAAAGGTGGCTTAG

Upstream 100 bases:

>100_bases
ATCGTGGCGCGCCCAGGTGCGCCGCAAGGGCCGCTATGTAAGCGAGACTTTCCTCCGGCGCGAGGATGCGCGGCGCTGGG
CGTTCGAGGCCGAGTGCGCC

Downstream 100 bases:

>100_bases
CGCGCGGCTGGCCGCGGCAGCTCGCGCATAAACTGAAACGTCCGCTGCTCGGGCGTGGGCCTGGCAGGCTGTGTCCGACG
GACATCGGACGTGGAGAGCT

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDRGDTPRSSRVQRVSSFADLIDLHVADMKAVGRAPGRSKDATLAMLKRELGSLDAVELGRERLIAFGRARAAQGAGPVT
VSMDLGMIRLVISHAAAVHGLPLSLEAVDLARIALKRLGLIGKSNERDRRPTEEEIERLVAHFNDNPRQVIPMARIIRFA
IATALRQEEICRVTWADLNPRTKMLTVRDRKDPRAKKGNDQRIPLLAVSGYDALALIEEQRGCRGNEDDRIFPYCHRSAG
TAFTRACKELQIEDLHFHDLRHEATSRLFEAGFTIEQVALVSGHKDWKMLRRYTHLRPEALHAVAASKVA

Sequences:

>Translated_310_residues
MDRGDTPRSSRVQRVSSFADLIDLHVADMKAVGRAPGRSKDATLAMLKRELGSLDAVELGRERLIAFGRARAAQGAGPVT
VSMDLGMIRLVISHAAAVHGLPLSLEAVDLARIALKRLGLIGKSNERDRRPTEEEIERLVAHFNDNPRQVIPMARIIRFA
IATALRQEEICRVTWADLNPRTKMLTVRDRKDPRAKKGNDQRIPLLAVSGYDALALIEEQRGCRGNEDDRIFPYCHRSAG
TAFTRACKELQIEDLHFHDLRHEATSRLFEAGFTIEQVALVSGHKDWKMLRRYTHLRPEALHAVAASKVA
>Mature_310_residues
MDRGDTPRSSRVQRVSSFADLIDLHVADMKAVGRAPGRSKDATLAMLKRELGSLDAVELGRERLIAFGRARAAQGAGPVT
VSMDLGMIRLVISHAAAVHGLPLSLEAVDLARIALKRLGLIGKSNERDRRPTEEEIERLVAHFNDNPRQVIPMARIIRFA
IATALRQEEICRVTWADLNPRTKMLTVRDRKDPRAKKGNDQRIPLLAVSGYDALALIEEQRGCRGNEDDRIFPYCHRSAG
TAFTRACKELQIEDLHFHDLRHEATSRLFEAGFTIEQVALVSGHKDWKMLRRYTHLRPEALHAVAASKVA

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34669; Mature: 34669

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRGDTPRSSRVQRVSSFADLIDLHVADMKAVGRAPGRSKDATLAMLKRELGSLDAVELG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHH
RERLIAFGRARAAQGAGPVTVSMDLGMIRLVISHAAAVHGLPLSLEAVDLARIALKRLGL
HHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
IGKSNERDRRPTEEEIERLVAHFNDNPRQVIPMARIIRFAIATALRQEEICRVTWADLNP
CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCC
RTKMLTVRDRKDPRAKKGNDQRIPLLAVSGYDALALIEEQRGCRGNEDDRIFPYCHRSAG
CEEEEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCC
TAFTRACKELQIEDLHFHDLRHEATSRLFEAGFTIEQVALVSGHKDWKMLRRYTHLRPEA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHCCHHH
LHAVAASKVA
HHHHHHHHCC
>Mature Secondary Structure
MDRGDTPRSSRVQRVSSFADLIDLHVADMKAVGRAPGRSKDATLAMLKRELGSLDAVELG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHH
RERLIAFGRARAAQGAGPVTVSMDLGMIRLVISHAAAVHGLPLSLEAVDLARIALKRLGL
HHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
IGKSNERDRRPTEEEIERLVAHFNDNPRQVIPMARIIRFAIATALRQEEICRVTWADLNP
CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCC
RTKMLTVRDRKDPRAKKGNDQRIPLLAVSGYDALALIEEQRGCRGNEDDRIFPYCHRSAG
CEEEEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCC
TAFTRACKELQIEDLHFHDLRHEATSRLFEAGFTIEQVALVSGHKDWKMLRRYTHLRPEA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHCCHHH
LHAVAASKVA
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]