| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197105650
Identifier: 197105650
GI number: 197105650
Start: 2473715
End: 2474977
Strand: Direct
Name: 197105650
Synonym: PHZ_c2187
Alternate gene names: NA
Gene position: 2473715-2474977 (Clockwise)
Preceding gene: 197105649
Following gene: 197105652
Centisome position: 61.9
GC content: 69.28
Gene sequence:
>1263_bases ATGAAGTACGTGAATCGCGTCCAGCGTCCTGACGGGACGATCCAGCTCTACCTGCGCAAGCGCGGGCTGCCGGCGGTCCG GCTGCCTGACGACCTGCCGCCGCGGGCCCTGGAGCAGCACGTCGCCCGGCTGATCCGGGACCTCGTCCCGGGTGGGACTG GCGCGTTGCGAGGCACCCTCGCCGCCGCCGTCCGGGTCTATGAACTGGAGAGCCCGGAGTTCCGGGCGCTCGCGAAGTCC ACCCAGTACGAGTACCGCCTGATCCTCAAGGAGTTCGACGAGGACCTCGGGAGCGTGGCGATCTCGGCGTTCACCCCGGC CTTCGTGGATCGGCTGAAGACGTCCTGGGCCAAGCGGGGCTATCGGGCCGCCAATCTGCGCCTGCAGGTGCTCAAGAACG TCCTGAAGCCCTGCCTGGTGTCCGGCCTCCTGGAGAAGGATCCGTTCCCGCTGGTTGGCCAGGTGCGGCGGCCGCGCGCG CTCAGGGAACCGCACCTCATCTGGTCGGACGAGATGTTCGAGGTCGTCGCCCAAGCCGCGCTGGACGCCGGCAAGCCTGG CCTGGCCCGCGCGCTCGCCATCGCCCGCTACGTCGGCGCCCGGCGGGGCGACCTCGTGGCCATCCCGAGGACCGCGCGCC AGAACGGACGGTTCCGGTTCATGTCGGGCAAGCGGCGCGTGCGGGTGGATGTCGCGGAGGACCCCCAGCTGACCCGTTGG CTGGAGCGGACGCCCGACGCCCCAGAACAGCGGCCCCGCCGCGGCCGAAAGGTCCCGCCTGGCGCGGAACCGGCGGCGAC CACGACGATCGTCTACAACGTCGCCGGCCGCCCCTACACGGAGGACGGCCTTGCCCTCGAGCTGCGCAAGCTGCTGGCGC GGCTCCATGCGCAGGGGCGGATCGACAGCGACCGCTACGACCTGCATGGCCTGCGCCACACCTGCGGGGTGGAGCTCGCC CTGGCCGGCTGCAGTGACGCGGAAGGGGCCGCGATGATGGGTCACGGCAGTCCGTCGAGCTTTGTTCAGTACCGCCGGCA GGCCGATCGCGTCCGTCTCGCCGACGCCGCGGCGACTCGTGTCGCGGCGCTGCGGGAACAACGTTCGAACAAAAAGTGCA ACGGCGAGTGCAACAAAAGTGCAACGAGGCCGACTTGGAACGAAAAAGGACCGGGAAATTTCCCAGTCCCTTCAAGGCCT TACGATGGTACCGCCTCTCCGGATCGAACGGAGGACCTCCAGAGCCACAATCTGGCGCTCTAA
Upstream 100 bases:
>100_bases GCGGCGACTTCTCGCCCAGGAGAGGAAGGAATGGACCGGGTGCTCGCCGCCGTCGAGCGGCGGGCGCTCGCGCGCCGAGG CAAGACCAACAGGATCCGCC
Downstream 100 bases:
>100_bases CCAACTGAGCTAAGGCGGCGCATCGCGAGGGCATGCTTCTAGTCGCGCGCAGCCCCCCAATCAAGCGCCCGTCAACGATC GAGCAACGGACGGCGGTAGC
Product: phage integrase
Products: NA
Alternate protein names: Integrase Family Protein
Number of amino acids: Translated: 420; Mature: 420
Protein sequence:
>420_residues MKYVNRVQRPDGTIQLYLRKRGLPAVRLPDDLPPRALEQHVARLIRDLVPGGTGALRGTLAAAVRVYELESPEFRALAKS TQYEYRLILKEFDEDLGSVAISAFTPAFVDRLKTSWAKRGYRAANLRLQVLKNVLKPCLVSGLLEKDPFPLVGQVRRPRA LREPHLIWSDEMFEVVAQAALDAGKPGLARALAIARYVGARRGDLVAIPRTARQNGRFRFMSGKRRVRVDVAEDPQLTRW LERTPDAPEQRPRRGRKVPPGAEPAATTTIVYNVAGRPYTEDGLALELRKLLARLHAQGRIDSDRYDLHGLRHTCGVELA LAGCSDAEGAAMMGHGSPSSFVQYRRQADRVRLADAAATRVAALREQRSNKKCNGECNKSATRPTWNEKGPGNFPVPSRP YDGTASPDRTEDLQSHNLAL
Sequences:
>Translated_420_residues MKYVNRVQRPDGTIQLYLRKRGLPAVRLPDDLPPRALEQHVARLIRDLVPGGTGALRGTLAAAVRVYELESPEFRALAKS TQYEYRLILKEFDEDLGSVAISAFTPAFVDRLKTSWAKRGYRAANLRLQVLKNVLKPCLVSGLLEKDPFPLVGQVRRPRA LREPHLIWSDEMFEVVAQAALDAGKPGLARALAIARYVGARRGDLVAIPRTARQNGRFRFMSGKRRVRVDVAEDPQLTRW LERTPDAPEQRPRRGRKVPPGAEPAATTTIVYNVAGRPYTEDGLALELRKLLARLHAQGRIDSDRYDLHGLRHTCGVELA LAGCSDAEGAAMMGHGSPSSFVQYRRQADRVRLADAAATRVAALREQRSNKKCNGECNKSATRPTWNEKGPGNFPVPSRP YDGTASPDRTEDLQSHNLAL >Mature_420_residues MKYVNRVQRPDGTIQLYLRKRGLPAVRLPDDLPPRALEQHVARLIRDLVPGGTGALRGTLAAAVRVYELESPEFRALAKS TQYEYRLILKEFDEDLGSVAISAFTPAFVDRLKTSWAKRGYRAANLRLQVLKNVLKPCLVSGLLEKDPFPLVGQVRRPRA LREPHLIWSDEMFEVVAQAALDAGKPGLARALAIARYVGARRGDLVAIPRTARQNGRFRFMSGKRRVRVDVAEDPQLTRW LERTPDAPEQRPRRGRKVPPGAEPAATTTIVYNVAGRPYTEDGLALELRKLLARLHAQGRIDSDRYDLHGLRHTCGVELA LAGCSDAEGAAMMGHGSPSSFVQYRRQADRVRLADAAATRVAALREQRSNKKCNGECNKSATRPTWNEKGPGNFPVPSRP YDGTASPDRTEDLQSHNLAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46698; Mature: 46698
Theoretical pI: Translated: 10.64; Mature: 10.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYVNRVQRPDGTIQLYLRKRGLPAVRLPDDLPPRALEQHVARLIRDLVPGGTGALRGTL CCHHHHHCCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH AAAVRVYELESPEFRALAKSTQYEYRLILKEFDEDLGSVAISAFTPAFVDRLKTSWAKRG HHHHHHEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC YRAANLRLQVLKNVLKPCLVSGLLEKDPFPLVGQVRRPRALREPHLIWSDEMFEVVAQAA CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHCCCCCEEHHHHHHHHHHHH LDAGKPGLARALAIARYVGARRGDLVAIPRTARQNGRFRFMSGKRRVRVDVAEDPQLTRW HCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHCCCCCEEEECCCCEEEEEECCCCHHHHH LERTPDAPEQRPRRGRKVPPGAEPAATTTIVYNVAGRPYTEDGLALELRKLLARLHAQGR HHHCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC IDSDRYDLHGLRHTCGVELALAGCSDAEGAAMMGHGSPSSFVQYRRQADRVRLADAAATR CCCCHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH VAALREQRSNKKCNGECNKSATRPTWNEKGPGNFPVPSRPYDGTASPDRTEDLQSHNLAL HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC >Mature Secondary Structure MKYVNRVQRPDGTIQLYLRKRGLPAVRLPDDLPPRALEQHVARLIRDLVPGGTGALRGTL CCHHHHHCCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH AAAVRVYELESPEFRALAKSTQYEYRLILKEFDEDLGSVAISAFTPAFVDRLKTSWAKRG HHHHHHEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC YRAANLRLQVLKNVLKPCLVSGLLEKDPFPLVGQVRRPRALREPHLIWSDEMFEVVAQAA CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHCCCCCEEHHHHHHHHHHHH LDAGKPGLARALAIARYVGARRGDLVAIPRTARQNGRFRFMSGKRRVRVDVAEDPQLTRW HCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHCCCCCEEEECCCCEEEEEECCCCHHHHH LERTPDAPEQRPRRGRKVPPGAEPAATTTIVYNVAGRPYTEDGLALELRKLLARLHAQGR HHHCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC IDSDRYDLHGLRHTCGVELALAGCSDAEGAAMMGHGSPSSFVQYRRQADRVRLADAAATR CCCCHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH VAALREQRSNKKCNGECNKSATRPTWNEKGPGNFPVPSRPYDGTASPDRTEDLQSHNLAL HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA