| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is yfcA [C]
Identifier: 197105647
GI number: 197105647
Start: 2469678
End: 2470457
Strand: Direct
Name: yfcA [C]
Synonym: PHZ_c2184
Alternate gene names: 197105647
Gene position: 2469678-2470457 (Clockwise)
Preceding gene: 197105646
Following gene: 197105648
Centisome position: 61.8
GC content: 77.56
Gene sequence:
>780_bases TTGCCGCGGCCGGACGGCCCTCGCACCGTGGGCGGGATGCAGGAGCTGCTGATCGTCGGGGCGGCCGGCCTGCTGGCCGG CGCCATGAACGCGCTCGCCGGCGGCGGCTCGTTCGTGTCCATGCCCGCGCTGATCGCCGCCGGGCTGCCGTCGGTCGCCG CCAACGCCACGAGCACCGTGGCCCTGTTCCCCGGCGGCGCCGCCAGCGCCTGGGTCTATCGCGGCGGCGTCCGGCCCTTC GCGGCGGCGCCCTTCCCCGCCCTGGTCGCGGCGACCGTCGCAGGCGGCTTCGCCGGGGGCCTGCTGCTGCTGTGGACGCC GAGCGCCACCTTCGACCGGGTGCTGCCCTGGCTGCTGCTGGCGGCGACGGCGATGCTGGCGGGGGGGCCGCGGATCGCGC CGCGGCTCGCCGGCCTCGCCGGGCGGCCCGCGGTGCTGCTGCTCCTCCAGTTCGGGCTGGGGGTCTACGGCGGCTACTTC GGCGGGGCGGTGGGCATCATGATGATGGCCGCCTGGCGGATGCTGACCGGCGCCGAGGTGCGGGACCTGCAGGGCGCCCG CACCCTGATGGTCACCGCCGCCAACGCGATCGCCGTGGCGACCTTCGTCGTCGCCGGCGCGGTGGCCTGGCCGTTCGCCC TGGCGCTCGGCGCCGGCGCCCTGGCGGGCGGCTACGCCGGGGCCCACGCCGGGCGGCGGTTGCCCGCGCGCGTCGTCAAG TGGACGACGGTCGGTCTCTGCGCCGGGGTGACCGTCCTGTTCTTCCTGCGAAGCCTCTGA
Upstream 100 bases:
>100_bases CACGACCATCTGCTGAAGATGGCGGGGCTGGCGTGACCGGCGGCGGGCCGCCCGCGCCAGGCCTTCGCGGGACGCGAAGG CTGTCTTCCTGGATGCCGCC
Downstream 100 bases:
>100_bases CCCCGCTCCCGGCGCGGTCCCGCGCCGGACGGCGCGCCCGCCTGGTCGGCGGGCGCAGACACCCCCACGCAACACCCTCC GATCCTATCACGTCACCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MPRPDGPRTVGGMQELLIVGAAGLLAGAMNALAGGGSFVSMPALIAAGLPSVAANATSTVALFPGGAASAWVYRGGVRPF AAAPFPALVAATVAGGFAGGLLLLWTPSATFDRVLPWLLLAATAMLAGGPRIAPRLAGLAGRPAVLLLLQFGLGVYGGYF GGAVGIMMMAAWRMLTGAEVRDLQGARTLMVTAANAIAVATFVVAGAVAWPFALALGAGALAGGYAGAHAGRRLPARVVK WTTVGLCAGVTVLFFLRSL
Sequences:
>Translated_259_residues MPRPDGPRTVGGMQELLIVGAAGLLAGAMNALAGGGSFVSMPALIAAGLPSVAANATSTVALFPGGAASAWVYRGGVRPF AAAPFPALVAATVAGGFAGGLLLLWTPSATFDRVLPWLLLAATAMLAGGPRIAPRLAGLAGRPAVLLLLQFGLGVYGGYF GGAVGIMMMAAWRMLTGAEVRDLQGARTLMVTAANAIAVATFVVAGAVAWPFALALGAGALAGGYAGAHAGRRLPARVVK WTTVGLCAGVTVLFFLRSL >Mature_258_residues PRPDGPRTVGGMQELLIVGAAGLLAGAMNALAGGGSFVSMPALIAAGLPSVAANATSTVALFPGGAASAWVYRGGVRPFA AAPFPALVAATVAGGFAGGLLLLWTPSATFDRVLPWLLLAATAMLAGGPRIAPRLAGLAGRPAVLLLLQFGLGVYGGYFG GAVGIMMMAAWRMLTGAEVRDLQGARTLMVTAANAIAVATFVVAGAVAWPFALALGAGALAGGYAGAHAGRRLPARVVKW TTVGLCAGVTVLFFLRSL
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25768; Mature: 25637
Theoretical pI: Translated: 12.07; Mature: 12.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRPDGPRTVGGMQELLIVGAAGLLAGAMNALAGGGSFVSMPALIAAGLPSVAANATSTV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCCCCEE ALFPGGAASAWVYRGGVRPFAAAPFPALVAATVAGGFAGGLLLLWTPSATFDRVLPWLLL EEECCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH AATAMLAGGPRIAPRLAGLAGRPAVLLLLQFGLGVYGGYFGGAVGIMMMAAWRMLTGAEV HHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH RDLQGARTLMVTAANAIAVATFVVAGAVAWPFALALGAGALAGGYAGAHAGRRLPARVVK HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHCCCCCHHHHHH WTTVGLCAGVTVLFFLRSL HHHHHHHHHHHHHHHHHHC >Mature Secondary Structure PRPDGPRTVGGMQELLIVGAAGLLAGAMNALAGGGSFVSMPALIAAGLPSVAANATSTV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCCCCEE ALFPGGAASAWVYRGGVRPFAAAPFPALVAATVAGGFAGGLLLLWTPSATFDRVLPWLLL EEECCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH AATAMLAGGPRIAPRLAGLAGRPAVLLLLQFGLGVYGGYFGGAVGIMMMAAWRMLTGAEV HHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH RDLQGARTLMVTAANAIAVATFVVAGAVAWPFALALGAGALAGGYAGAHAGRRLPARVVK HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHCCCCCHHHHHH WTTVGLCAGVTVLFFLRSL HHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA