| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197105632
Identifier: 197105632
GI number: 197105632
Start: 2444425
End: 2445207
Strand: Direct
Name: 197105632
Synonym: PHZ_c2169
Alternate gene names: NA
Gene position: 2444425-2445207 (Clockwise)
Preceding gene: 197105631
Following gene: 197105633
Centisome position: 61.17
GC content: 69.35
Gene sequence:
>783_bases GTGGGTGGCAGCGAGACCGACGCCAACGACGCCGAGGCGATCTGCGAGGCGGTGACGCGGCCGACGATGCGGTTCGTGGC GATCAAGTCCGAGCAGCAGCAGGCGGCCCTGGCGCTGCACCGGACCCGAGATCTGCTGGTCAAGCAGCGCACCCAGCTGG TCAACATGATCCGCGGCCTCCTGGCTGAGTTTGGGATCGAGATGGCGCGCGGCCTGCATCATGCCCTCGACCTAGCCGCA CGGGTTGCTCAAGGCGCTGCGCCGGACGTGCCCGAGCTGGCGGCGCGAGTCATCACCGGCCTGGCGGGCCAGATCGGCGA TCTGCAGGTCCGTCTCACGGCGCTGGAGAAGGAGCTGCTGACCTGGCATCGGACAAACGAGCTGTCTCAGCGCCTCAGCA CCATCCCTGGCGTCGGCCTGATCTCGGCCACGGCGCTTGCCGCCTCAGTCACCGACGCCAGCCGCTTCCGCTCCGGGCGG CAGTTTGCGGCCTCGCTTGGCCTAACACCGCTGCAGAACTCCAGCGGCGGCAAGGAGCGGATGGGGAGGATCTCACGGAT GGGCGATCGATATCTGAGACGCCTGCTGGTCGTCGGCATGACCTCGCTCGTGCGCCGTGCACGAACAAGACCGGACTCGG TCGACCCGCGCATCGCTGCGATGCTGGCGCGCAAACCCGCTCGCGTGGTGACGGTGGCCGCGGCCAATCGCACCGCCCGT GTCGCCTGGTCGATCATGGCCCGCGGCGGCGTCTACCGCGCGCCTCAGGGCGTGACCGCCTGA
Upstream 100 bases:
>100_bases TGTGGCGGCCTGGCGGATCCGCTTCGCCCTCGAGCACTGGTCCGAAGTCTCGGTCAGAACGCGGCAGGCGGCGCACGCCG AGGTCGAAGCCTTCTCGCGG
Downstream 100 bases:
>100_bases CAGATTAGCTGATCGTCGACGACCAGCTTCCGGAGGTTGCGAGCGCGATGTGAAGTGATGGCGAACCGGTCAGACCGGGA GCTGGGACACCCCGCGTAGT
Product: transposase,IS1111A\IS1328\IS1533
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MGGSETDANDAEAICEAVTRPTMRFVAIKSEQQQAALALHRTRDLLVKQRTQLVNMIRGLLAEFGIEMARGLHHALDLAA RVAQGAAPDVPELAARVITGLAGQIGDLQVRLTALEKELLTWHRTNELSQRLSTIPGVGLISATALAASVTDASRFRSGR QFAASLGLTPLQNSSGGKERMGRISRMGDRYLRRLLVVGMTSLVRRARTRPDSVDPRIAAMLARKPARVVTVAAANRTAR VAWSIMARGGVYRAPQGVTA
Sequences:
>Translated_260_residues MGGSETDANDAEAICEAVTRPTMRFVAIKSEQQQAALALHRTRDLLVKQRTQLVNMIRGLLAEFGIEMARGLHHALDLAA RVAQGAAPDVPELAARVITGLAGQIGDLQVRLTALEKELLTWHRTNELSQRLSTIPGVGLISATALAASVTDASRFRSGR QFAASLGLTPLQNSSGGKERMGRISRMGDRYLRRLLVVGMTSLVRRARTRPDSVDPRIAAMLARKPARVVTVAAANRTAR VAWSIMARGGVYRAPQGVTA >Mature_259_residues GGSETDANDAEAICEAVTRPTMRFVAIKSEQQQAALALHRTRDLLVKQRTQLVNMIRGLLAEFGIEMARGLHHALDLAAR VAQGAAPDVPELAARVITGLAGQIGDLQVRLTALEKELLTWHRTNELSQRLSTIPGVGLISATALAASVTDASRFRSGRQ FAASLGLTPLQNSSGGKERMGRISRMGDRYLRRLLVVGMTSLVRRARTRPDSVDPRIAAMLARKPARVVTVAAANRTARV AWSIMARGGVYRAPQGVTA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 20 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 28007; Mature: 27876
Theoretical pI: Translated: 11.97; Mature: 11.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGSETDANDAEAICEAVTRPTMRFVAIKSEQQQAALALHRTRDLLVKQRTQLVNMIRGL CCCCCCCCCHHHHHHHHHHCCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAEFGIEMARGLHHALDLAARVAQGAAPDVPELAARVITGLAGQIGDLQVRLTALEKELL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH TWHRTNELSQRLSTIPGVGLISATALAASVTDASRFRSGRQFAASLGLTPLQNSSGGKER HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH MGRISRMGDRYLRRLLVVGMTSLVRRARTRPDSVDPRIAAMLARKPARVVTVAAANRTAR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEEECCCHHH VAWSIMARGGVYRAPQGVTA HHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure GGSETDANDAEAICEAVTRPTMRFVAIKSEQQQAALALHRTRDLLVKQRTQLVNMIRGL CCCCCCCCHHHHHHHHHHCCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAEFGIEMARGLHHALDLAARVAQGAAPDVPELAARVITGLAGQIGDLQVRLTALEKELL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH TWHRTNELSQRLSTIPGVGLISATALAASVTDASRFRSGRQFAASLGLTPLQNSSGGKER HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH MGRISRMGDRYLRRLLVVGMTSLVRRARTRPDSVDPRIAAMLARKPARVVTVAAANRTAR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEEECCCHHH VAWSIMARGGVYRAPQGVTA HHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]