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The map label for this gene is yfdE [H]

Identifier: 197105594

GI number: 197105594

Start: 2397884

End: 2399116

Strand: Direct

Name: yfdE [H]

Synonym: PHZ_c2131

Alternate gene names: 197105594

Gene position: 2397884-2399116 (Clockwise)

Preceding gene: 197105591

Following gene: 197105595

Centisome position: 60.0

GC content: 71.13

Gene sequence:

>1233_bases
ATGGCGGCGCAGCAGGGTCAGGGCGCGGGCCGCGCCTTGGAGGGCGTGACGGTCATCGACCTCACCCACATGCTCTCCGG
CCCCTACGCCACCATGCTGATGGCCGACCTGGGCGCCCGGACCATCAAGGTCGAGCCGCCGGGCGCCGGGGAAGGCACCC
GCAAGCTGCTGCGCGACACGCCCGAGTACGCCCGGGACGGCATGGGCGCCTACTTCCTGACCCTGTGCCGCAACAAGGAG
AGCGTCGCGCTGGACCTGAAGTCGGCGGCCGGCCGCGAGGTCTTCTACGAGCTCGTGAAGCACGCCGACGTGGTGGTCTC
GAACTTCGGGGTCGGCGTCCTCGAGCGGCTGGAGATCGATCACGCCGTCCTCGTGCGGCACAATCCCCGGATCATCACCT
GCGCCATCTCCGGGTTCGGCGAGACCGGCCCGGCCCGCAACCGACCGGCCTTCGACCTCGTCGCCCAGGGCATGGGCGGG
GGCATGTCCCTGACCGGCCACCCGCACGACGAGCCGCTGCGCGCCGGCATCCCCATCGGCGACCTCGGCGGCGGCCTGTT
CGGCGTGATCGGGATCCTGTCCGCGCTGCAGGCGCGCGAGCGCACCGGCGTCGGCCAGCATGTCGACATCTCGATGTTCG
ACTGCCAGCTCTCGCTGCTGAACTACATGGCCACCATGTCGCTGATGTCGGGCAAGTCGACCGCCCGCGCCGGCAACGGC
CACTTCGTCCACGTGCCCTACAACACCTTCCGGACGAAGACCCGCCACCTGATCATCGCGGTCATCACCGACGGCTTCTG
GCGCAGTCTGGTGGACCTGCTGGACGACGAGGAGCTGCGCCGGCCCGAGTTCGACCACCAGCCGGGACGTCTGGCCGAGA
AGGCCTACATCGAGGCGCGCGTGCAGGCCGCCTTCGAGCGCGAGACGTGCGAGTACTGGCTGGAGCGGCTGGCGCAGGTG
CGCATTCCCGCCGCGCCGGTGAACGACATCGCCCACGCCTTCGCCGACGAGCAGGCGATCGCGCGCAACATGCGCGTCCG
CGTCCCCCTGCCGGGCGGCGGAGAGATCGAGCAGCCGGGCAACCCGGTGAAGCTCTCGGAGACCGCGGCCGAGGTCTACA
CCCCGCCCCCGCGCCTGGGCGAGCACACCGCCTCGGTTCTCGAGACGCTCGCCGGCGTCGGCGCCGAGCGCCTCAAGGAC
CTCGCCGAAGCCGGCGTCGTGCAGTTGGGCTAG

Upstream 100 bases:

>100_bases
ATGAAGCGCCACAGACGGGTTGCGCCCCCTTCCAATGATCGCATACAATTTCATCGAAGCGCTCGAGCAGGGCGCCACGG
GAAGCGTTGGGGGATCGAGC

Downstream 100 bases:

>100_bases
GCCCAGACGGCCGCGCGGCCGGATACATCCCTTTCCCCAGGAGGACGCCATGACCCTAACCATCCCCCACGCCAGCATCT
CGCAGGCCGCCGCCGACAGG

Product: predicted acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MAAQQGQGAGRALEGVTVIDLTHMLSGPYATMLMADLGARTIKVEPPGAGEGTRKLLRDTPEYARDGMGAYFLTLCRNKE
SVALDLKSAAGREVFYELVKHADVVVSNFGVGVLERLEIDHAVLVRHNPRIITCAISGFGETGPARNRPAFDLVAQGMGG
GMSLTGHPHDEPLRAGIPIGDLGGGLFGVIGILSALQARERTGVGQHVDISMFDCQLSLLNYMATMSLMSGKSTARAGNG
HFVHVPYNTFRTKTRHLIIAVITDGFWRSLVDLLDDEELRRPEFDHQPGRLAEKAYIEARVQAAFERETCEYWLERLAQV
RIPAAPVNDIAHAFADEQAIARNMRVRVPLPGGGEIEQPGNPVKLSETAAEVYTPPPRLGEHTASVLETLAGVGAERLKD
LAEAGVVQLG

Sequences:

>Translated_410_residues
MAAQQGQGAGRALEGVTVIDLTHMLSGPYATMLMADLGARTIKVEPPGAGEGTRKLLRDTPEYARDGMGAYFLTLCRNKE
SVALDLKSAAGREVFYELVKHADVVVSNFGVGVLERLEIDHAVLVRHNPRIITCAISGFGETGPARNRPAFDLVAQGMGG
GMSLTGHPHDEPLRAGIPIGDLGGGLFGVIGILSALQARERTGVGQHVDISMFDCQLSLLNYMATMSLMSGKSTARAGNG
HFVHVPYNTFRTKTRHLIIAVITDGFWRSLVDLLDDEELRRPEFDHQPGRLAEKAYIEARVQAAFERETCEYWLERLAQV
RIPAAPVNDIAHAFADEQAIARNMRVRVPLPGGGEIEQPGNPVKLSETAAEVYTPPPRLGEHTASVLETLAGVGAERLKD
LAEAGVVQLG
>Mature_409_residues
AAQQGQGAGRALEGVTVIDLTHMLSGPYATMLMADLGARTIKVEPPGAGEGTRKLLRDTPEYARDGMGAYFLTLCRNKES
VALDLKSAAGREVFYELVKHADVVVSNFGVGVLERLEIDHAVLVRHNPRIITCAISGFGETGPARNRPAFDLVAQGMGGG
MSLTGHPHDEPLRAGIPIGDLGGGLFGVIGILSALQARERTGVGQHVDISMFDCQLSLLNYMATMSLMSGKSTARAGNGH
FVHVPYNTFRTKTRHLIIAVITDGFWRSLVDLLDDEELRRPEFDHQPGRLAEKAYIEARVQAAFERETCEYWLERLAQVR
IPAAPVNDIAHAFADEQAIARNMRVRVPLPGGGEIEQPGNPVKLSETAAEVYTPPPRLGEHTASVLETLAGVGAERLKDL
AEAGVVQLG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=398, Percent_Identity=31.6582914572864, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI300863124, Length=424, Percent_Identity=29.7169811320755, Blast_Score=208, Evalue=8e-54,
Organism=Homo sapiens, GI13376042, Length=424, Percent_Identity=27.3584905660377, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI300863126, Length=398, Percent_Identity=28.1407035175879, Blast_Score=172, Evalue=6e-43,
Organism=Homo sapiens, GI42794625, Length=408, Percent_Identity=26.2254901960784, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI266456254, Length=408, Percent_Identity=26.2254901960784, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=30.6818181818182, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266458397, Length=263, Percent_Identity=30.4182509505703, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI42822893, Length=150, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI266458395, Length=150, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=9e-18,
Organism=Escherichia coli, GI87082093, Length=358, Percent_Identity=38.5474860335196, Blast_Score=254, Evalue=8e-69,
Organism=Escherichia coli, GI1788717, Length=405, Percent_Identity=32.0987654320988, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1786222, Length=412, Percent_Identity=24.2718446601942, Blast_Score=90, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=341, Percent_Identity=25.5131964809384, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=372, Percent_Identity=23.1182795698925, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648431, Length=397, Percent_Identity=32.9974811083123, Blast_Score=221, Evalue=5e-58,
Organism=Drosophila melanogaster, GI24585488, Length=342, Percent_Identity=25.1461988304094, Blast_Score=100, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44227; Mature: 44096

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAQQGQGAGRALEGVTVIDLTHMLSGPYATMLMADLGARTIKVEPPGAGEGTRKLLRDT
CCCCCCCCCCCHHCCEEEEEHHHHHCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCC
PEYARDGMGAYFLTLCRNKESVALDLKSAAGREVFYELVKHADVVVSNFGVGVLERLEID
HHHHHCCCCCEEHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
HAVLVRHNPRIITCAISGFGETGPARNRPAFDLVAQGMGGGMSLTGHPHDEPLRAGIPIG
CEEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCH
DLGGGLFGVIGILSALQARERTGVGQHVDISMFDCQLSLLNYMATMSLMSGKSTARAGNG
HCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCC
HFVHVPYNTFRTKTRHLIIAVITDGFWRSLVDLLDDEELRRPEFDHQPGRLAEKAYIEAR
CEEEECCHHHHCCCCEEEEEEECCHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHH
VQAAFERETCEYWLERLAQVRIPAAPVNDIAHAFADEQAIARNMRVRVPLPGGGEIEQPG
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
NPVKLSETAAEVYTPPPRLGEHTASVLETLAGVGAERLKDLAEAGVVQLG
CCEEECHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEECC
>Mature Secondary Structure 
AAQQGQGAGRALEGVTVIDLTHMLSGPYATMLMADLGARTIKVEPPGAGEGTRKLLRDT
CCCCCCCCCCHHCCEEEEEHHHHHCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCC
PEYARDGMGAYFLTLCRNKESVALDLKSAAGREVFYELVKHADVVVSNFGVGVLERLEID
HHHHHCCCCCEEHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
HAVLVRHNPRIITCAISGFGETGPARNRPAFDLVAQGMGGGMSLTGHPHDEPLRAGIPIG
CEEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCH
DLGGGLFGVIGILSALQARERTGVGQHVDISMFDCQLSLLNYMATMSLMSGKSTARAGNG
HCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCC
HFVHVPYNTFRTKTRHLIIAVITDGFWRSLVDLLDDEELRRPEFDHQPGRLAEKAYIEAR
CEEEECCHHHHCCCCEEEEEEECCHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHH
VQAAFERETCEYWLERLAQVRIPAAPVNDIAHAFADEQAIARNMRVRVPLPGGGEIEQPG
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
NPVKLSETAAEVYTPPPRLGEHTASVLETLAGVGAERLKDLAEAGVVQLG
CCEEECHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]