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The map label for this gene is yfdE [H]

Identifier: 197105584

GI number: 197105584

Start: 2386665

End: 2387828

Strand: Direct

Name: yfdE [H]

Synonym: PHZ_c2121

Alternate gene names: 197105584

Gene position: 2386665-2387828 (Clockwise)

Preceding gene: 197105580

Following gene: 197105585

Centisome position: 59.72

GC content: 72.51

Gene sequence:

>1164_bases
ATGCTGCCGCTGGAAGGCGTGAGAATCCTGGATCTCGGCGCGGTGCTGATGGCGCCCTATGCGGCCCAGTGGCTGGCCGA
TTTCGGCGCCGAAGTCATCAAGGTCGAGCCGCCCGCCGGCGACACCACCCGCCGGATCGGGCCGACCGCCGAGCCCGGCA
TGGCCTCGGTGTTCCTGGGGGCCAACCGCAACAAGAAGAGCATCGTCCTCGACCTGAAGACGCCGGCCGGCCGCGATGCC
CTGCTGGCGCTCGTCGACGGCGCCGATGCGCTGCTGCACAACAACCGGCCGCAGAAGATGAAGGCCCTGGGGCTCGGCCC
CGAGACGCTGCGGGCGCGCAATCCGCGCCTCGTCTACGCCTGCCTGCACGGCTTCGGGGAGACAGGCCCCTACGGCGGCC
GCCCGGCCTACGACGACATCATCCAGGGCATGTGCGGCCTGGCCGACCTGGCGGGCCAGCGGACCGGGGCGCCGGCCTAC
CTGCCCACGGCGGCCGCCGACAAGACCGCCGGGATGGTCGGCGCGATCGCCATCCTCTCGGCGCTCGTGCGCCAGCAGCG
GACCGGCGAAGGCGCCTATGTCGAGGTCCCGATGTTCGAGGCGCTGGTCGCCTACACTGCCGTCGAGCACCTCTACGGCC
GCCACTTCGATCCGCCCAAGGGACCCGCCGCCTATCCGCGGGTGATGACGCCCGAACGGCGCCCCTTCGCCACGGCGGAC
GGCCACATCTGCGCCCTGCCCTACACCGACGCGCACTGGCGGCGGTTCTTCGAGGCGGCCGGGCGGCCCGAGCTGGCCGA
CGATCCCCGCTTCGACGGCGTGGCCGCCCGCACCGAGAACATCGGCGAACTCTACGCGATCGTGGCCGAGATCCTGGCGA
CCCGCACGACGGCCGAATGGACGAAAATCCTCGACGGGATCGAGGCGCCGAACGGGCCGGTGAACAGCCTCGACGACCTG
ATCGCCGACCCGCACCTGGAGGCGGTCGGCCTGTTCGAGACCCTGGAGCAGCCGGACGGGGCGCGGCTGCGCATGACGGG
CGTGCCGGTGCTCATCGACGGCGAGCGTCCACCGGTGCGCATGCCGCCGCGGCTGGGCGAACACACCCGCGAGGTGCTGC
TCGCCGCCGGGCTCTCGCCGGAGCAGGTCGAGGCCCTGGCCTGA

Upstream 100 bases:

>100_bases
CTCCACGATATGCCTCCGCTATCGATCATCGACGCAATGATATTGGCCGGAGGCCCACGGGGCCAATAGGGTCGCGCCGC
AAAAGGAGGCCCGGGCCCGC

Downstream 100 bases:

>100_bases
CCGCACGAGAGGCCCTGGGGCGCAATTTGCATCCAGTCGTCGCGGCGGAGTCGCCCCATCTCCGTGAAGAGACCCTCGGA
ACGGATTGCATACTTGAATG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MLPLEGVRILDLGAVLMAPYAAQWLADFGAEVIKVEPPAGDTTRRIGPTAEPGMASVFLGANRNKKSIVLDLKTPAGRDA
LLALVDGADALLHNNRPQKMKALGLGPETLRARNPRLVYACLHGFGETGPYGGRPAYDDIIQGMCGLADLAGQRTGAPAY
LPTAAADKTAGMVGAIAILSALVRQQRTGEGAYVEVPMFEALVAYTAVEHLYGRHFDPPKGPAAYPRVMTPERRPFATAD
GHICALPYTDAHWRRFFEAAGRPELADDPRFDGVAARTENIGELYAIVAEILATRTTAEWTKILDGIEAPNGPVNSLDDL
IADPHLEAVGLFETLEQPDGARLRMTGVPVLIDGERPPVRMPPRLGEHTREVLLAAGLSPEQVEALA

Sequences:

>Translated_387_residues
MLPLEGVRILDLGAVLMAPYAAQWLADFGAEVIKVEPPAGDTTRRIGPTAEPGMASVFLGANRNKKSIVLDLKTPAGRDA
LLALVDGADALLHNNRPQKMKALGLGPETLRARNPRLVYACLHGFGETGPYGGRPAYDDIIQGMCGLADLAGQRTGAPAY
LPTAAADKTAGMVGAIAILSALVRQQRTGEGAYVEVPMFEALVAYTAVEHLYGRHFDPPKGPAAYPRVMTPERRPFATAD
GHICALPYTDAHWRRFFEAAGRPELADDPRFDGVAARTENIGELYAIVAEILATRTTAEWTKILDGIEAPNGPVNSLDDL
IADPHLEAVGLFETLEQPDGARLRMTGVPVLIDGERPPVRMPPRLGEHTREVLLAAGLSPEQVEALA
>Mature_387_residues
MLPLEGVRILDLGAVLMAPYAAQWLADFGAEVIKVEPPAGDTTRRIGPTAEPGMASVFLGANRNKKSIVLDLKTPAGRDA
LLALVDGADALLHNNRPQKMKALGLGPETLRARNPRLVYACLHGFGETGPYGGRPAYDDIIQGMCGLADLAGQRTGAPAY
LPTAAADKTAGMVGAIAILSALVRQQRTGEGAYVEVPMFEALVAYTAVEHLYGRHFDPPKGPAAYPRVMTPERRPFATAD
GHICALPYTDAHWRRFFEAAGRPELADDPRFDGVAARTENIGELYAIVAEILATRTTAEWTKILDGIEAPNGPVNSLDDL
IADPHLEAVGLFETLEQPDGARLRMTGVPVLIDGERPPVRMPPRLGEHTREVLLAAGLSPEQVEALA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=376, Percent_Identity=32.4468085106383, Blast_Score=198, Evalue=6e-51,
Organism=Homo sapiens, GI300863124, Length=403, Percent_Identity=31.2655086848635, Blast_Score=187, Evalue=1e-47,
Organism=Homo sapiens, GI300863126, Length=373, Percent_Identity=30.5630026809651, Blast_Score=163, Evalue=3e-40,
Organism=Homo sapiens, GI13376042, Length=403, Percent_Identity=29.2803970223325, Blast_Score=155, Evalue=7e-38,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=30, Blast_Score=138, Evalue=1e-32,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=30, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI266458393, Length=203, Percent_Identity=33.9901477832512, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI266458397, Length=203, Percent_Identity=33.9901477832512, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI42822893, Length=139, Percent_Identity=38.1294964028777, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI266458395, Length=139, Percent_Identity=38.1294964028777, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI87082093, Length=376, Percent_Identity=32.4468085106383, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1788717, Length=407, Percent_Identity=29.2383292383292, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1786222, Length=318, Percent_Identity=28.6163522012579, Blast_Score=87, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=317, Percent_Identity=26.4984227129338, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=326, Percent_Identity=24.5398773006135, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24648431, Length=377, Percent_Identity=34.7480106100796, Blast_Score=214, Evalue=9e-56,
Organism=Drosophila melanogaster, GI24585488, Length=347, Percent_Identity=26.2247838616715, Blast_Score=104, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41424; Mature: 41424

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLEGVRILDLGAVLMAPYAAQWLADFGAEVIKVEPPAGDTTRRIGPTAEPGMASVFLG
CCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEC
ANRNKKSIVLDLKTPAGRDALLALVDGADALLHNNRPQKMKALGLGPETLRARNPRLVYA
CCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHCCCCHHHHHHCCCHHHHHCCCCCEEEE
CLHGFGETGPYGGRPAYDDIIQGMCGLADLAGQRTGAPAYLPTAAADKTAGMVGAIAILS
EHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ALVRQQRTGEGAYVEVPMFEALVAYTAVEHLYGRHFDPPKGPAAYPRVMTPERRPFATAD
HHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GHICALPYTDAHWRRFFEAAGRPELADDPRFDGVAARTENIGELYAIVAEILATRTTAEW
CCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
TKILDGIEAPNGPVNSLDDLIADPHLEAVGLFETLEQPDGARLRMTGVPVLIDGERPPVR
HHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCCCC
MPPRLGEHTREVLLAAGLSPEQVEALA
CCCCCCHHHHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure
MLPLEGVRILDLGAVLMAPYAAQWLADFGAEVIKVEPPAGDTTRRIGPTAEPGMASVFLG
CCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEC
ANRNKKSIVLDLKTPAGRDALLALVDGADALLHNNRPQKMKALGLGPETLRARNPRLVYA
CCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHCCCCHHHHHHCCCHHHHHCCCCCEEEE
CLHGFGETGPYGGRPAYDDIIQGMCGLADLAGQRTGAPAYLPTAAADKTAGMVGAIAILS
EHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ALVRQQRTGEGAYVEVPMFEALVAYTAVEHLYGRHFDPPKGPAAYPRVMTPERRPFATAD
HHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GHICALPYTDAHWRRFFEAAGRPELADDPRFDGVAARTENIGELYAIVAEILATRTTAEW
CCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
TKILDGIEAPNGPVNSLDDLIADPHLEAVGLFETLEQPDGARLRMTGVPVLIDGERPPVR
HHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCCCC
MPPRLGEHTREVLLAAGLSPEQVEALA
CCCCCCHHHHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]