| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
Click here to switch to the map view.
The map label for this gene is ilvD [H]
Identifier: 197105537
GI number: 197105537
Start: 2319121
End: 2320845
Strand: Reverse
Name: ilvD [H]
Synonym: PHZ_c2074
Alternate gene names: 197105537
Gene position: 2320845-2319121 (Counterclockwise)
Preceding gene: 197105538
Following gene: 197105536
Centisome position: 58.08
GC content: 70.61
Gene sequence:
>1725_bases ATGGCCAGGAAGCCGCTGCGCAGCCAACGGAGCTACGGCAAGCACGACCGCGACGGCTTCATCCACCGGAGCTGGATCAA GGGCACGGGCCTGCCGGACCACGTCTTCGACGGCCGGCCGATCATCGGCGTCTGCAACACCTGGTCCGAGCTGGTCACCT GCCAGTTCCACCTGCGCGACCTGGCCGAGTACGTGAAGCGCGGCGTCTGGGAGGCGGGCGGGGTGCCGATCGAGTTCCCG GCCATGAGCCTGCCCGAGACCCAGATGCGGCCTACGGCCATGCTGTTCCGCAACCTCCTGGCCATGGAGGTGGAGGAGAG CATCCGCGCCAACCCCATCGACGGGGTGGTCCTGCTGGGCGGCTGCGACAAGACCACGCCCGGCCAGCTCATGGGCGCGG CCAGCGTCGACCTGCCGACCATGGTGGTCTCGTCCGGCCCGATGCTGAACGGCAAGTGGCACGGCCGCGACATCGGCTCG GGCACCGATGTGTGGCGCTTCTCCGAGGCGGTGCGGGCGGGCGAGATGAGCCTGACGGACTTCCTCTCGGCCGAGAGCTC GATGAGCCGCAGCCACGGGACCTGCAACACCATGGGCACGGCCTCGACCATGGCCAGCCTGATGGAGGCTCTGGGCGTCT GCCTGCCGAACAACGCCGCGCTGCCCGGCGTGGACTCCCGCCGCAAGACGCTCGCTCACCTCACGGGCAACCGCATCGTC CAGCTCGTCAAGGACGACGTCAGGCTCTCGCAGATTCTCACCCGCGAGGCGTTCGAGAACGCCATCCTGATGCACGCCGC GATCGGCGGCTCGACCAACGCGGTGGTCCACCTGCTGGCCCTGGCCGGGCGGGTCGGGATCGAGCTGTCGCTGGAGGATT TCGACCGCATCGGCCGCGAGGTCCCGCTGCTGGTGAACCTGATGCCGTCGGGCAAATACCTGATGGAGGAGTTCTGCTAC GCCGGCGGCTGCCCGGCGGTGATGAAAGAGCTGGGGCCGCTGCTGCGGCGCGAGGCGATCACCGTCTCGGGCCATACCCA GGGCCAGATCGCCGAGGCCGCCGAGGTCTGGAACCGCGAGGTGATCGGCACGCGGGAGGCGCCGGTCGGGCCGTCCTCGG GCGTGTGGGTGCTGCGCGGCAACCTCTGTCCCGGCGGGGCGATCCTGAAGCCCAGCGCCGCGACGCCGGCCCTGCTGACC CACCGCGGCCGCGCGGTCGTCTTCGAGGACATCGAGGACTACCACGCCCGCATTGACGATCCGGACCTGCCCGTGGACGA GACCTCGATCCTGGTGCTCAAGGGCTGCGGCCCCAAGGGCTACCCCGGCATGCCCGAGGTGGGGAACATGGCCCTGCCGC CCAAGCTGCTGCACAGAGGCGTGCGCGACATGGTCCGAATCTCGGACGCGCGGATGAGCGGCACGGCCTACGGCACGGTG ATCCTGCACGTCTCGCCCGAGGCCGAGGCGGGCGGGCCGCTGGCGCTGGTGCGGAACGGTGACGAGATCGCCTTCGACGG CCCCAGCCGCACCCTCGACCTGCTGGTGGACGAGGCCGAGCTGGCCCGCCGCCGCGCCGAGTGGGAGGCCGCCCGCACGC CCTCGCAGTTCGACCGCGGCTGGTACAAGCTCTACATCGACACCGTGCTGCAGGCGGACCGCGGCGCCGACCTCGACTTC CTGGTCGGCAAGTCCAGCCCCGACGTCACCCGCGAGTCCCACTGA
Upstream 100 bases:
>100_bases GGGGGTGAAGGGCCTGCCGCTGCCGGTGTTCGAGGGCTGAACCCCGGCCCCGCTCGGGGGTTTATCTCTCGGGCATCACG GGAACGCCGAGGGGTCGGGA
Downstream 100 bases:
>100_bases TGGCGGGGGCGATCTATCCCGGCATGAAGGACCGCGTGGTCTTCGTCACCGGCGGCGCCTCGGGCATCGGGGCCGCCTTC GTCGAGCAGTTCCACGCCCA
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 574; Mature: 573
Protein sequence:
>574_residues MARKPLRSQRSYGKHDRDGFIHRSWIKGTGLPDHVFDGRPIIGVCNTWSELVTCQFHLRDLAEYVKRGVWEAGGVPIEFP AMSLPETQMRPTAMLFRNLLAMEVEESIRANPIDGVVLLGGCDKTTPGQLMGAASVDLPTMVVSSGPMLNGKWHGRDIGS GTDVWRFSEAVRAGEMSLTDFLSAESSMSRSHGTCNTMGTASTMASLMEALGVCLPNNAALPGVDSRRKTLAHLTGNRIV QLVKDDVRLSQILTREAFENAILMHAAIGGSTNAVVHLLALAGRVGIELSLEDFDRIGREVPLLVNLMPSGKYLMEEFCY AGGCPAVMKELGPLLRREAITVSGHTQGQIAEAAEVWNREVIGTREAPVGPSSGVWVLRGNLCPGGAILKPSAATPALLT HRGRAVVFEDIEDYHARIDDPDLPVDETSILVLKGCGPKGYPGMPEVGNMALPPKLLHRGVRDMVRISDARMSGTAYGTV ILHVSPEAEAGGPLALVRNGDEIAFDGPSRTLDLLVDEAELARRRAEWEAARTPSQFDRGWYKLYIDTVLQADRGADLDF LVGKSSPDVTRESH
Sequences:
>Translated_574_residues MARKPLRSQRSYGKHDRDGFIHRSWIKGTGLPDHVFDGRPIIGVCNTWSELVTCQFHLRDLAEYVKRGVWEAGGVPIEFP AMSLPETQMRPTAMLFRNLLAMEVEESIRANPIDGVVLLGGCDKTTPGQLMGAASVDLPTMVVSSGPMLNGKWHGRDIGS GTDVWRFSEAVRAGEMSLTDFLSAESSMSRSHGTCNTMGTASTMASLMEALGVCLPNNAALPGVDSRRKTLAHLTGNRIV QLVKDDVRLSQILTREAFENAILMHAAIGGSTNAVVHLLALAGRVGIELSLEDFDRIGREVPLLVNLMPSGKYLMEEFCY AGGCPAVMKELGPLLRREAITVSGHTQGQIAEAAEVWNREVIGTREAPVGPSSGVWVLRGNLCPGGAILKPSAATPALLT HRGRAVVFEDIEDYHARIDDPDLPVDETSILVLKGCGPKGYPGMPEVGNMALPPKLLHRGVRDMVRISDARMSGTAYGTV ILHVSPEAEAGGPLALVRNGDEIAFDGPSRTLDLLVDEAELARRRAEWEAARTPSQFDRGWYKLYIDTVLQADRGADLDF LVGKSSPDVTRESH >Mature_573_residues ARKPLRSQRSYGKHDRDGFIHRSWIKGTGLPDHVFDGRPIIGVCNTWSELVTCQFHLRDLAEYVKRGVWEAGGVPIEFPA MSLPETQMRPTAMLFRNLLAMEVEESIRANPIDGVVLLGGCDKTTPGQLMGAASVDLPTMVVSSGPMLNGKWHGRDIGSG TDVWRFSEAVRAGEMSLTDFLSAESSMSRSHGTCNTMGTASTMASLMEALGVCLPNNAALPGVDSRRKTLAHLTGNRIVQ LVKDDVRLSQILTREAFENAILMHAAIGGSTNAVVHLLALAGRVGIELSLEDFDRIGREVPLLVNLMPSGKYLMEEFCYA GGCPAVMKELGPLLRREAITVSGHTQGQIAEAAEVWNREVIGTREAPVGPSSGVWVLRGNLCPGGAILKPSAATPALLTH RGRAVVFEDIEDYHARIDDPDLPVDETSILVLKGCGPKGYPGMPEVGNMALPPKLLHRGVRDMVRISDARMSGTAYGTVI LHVSPEAEAGGPLALVRNGDEIAFDGPSRTLDLLVDEAELARRRAEWEAARTPSQFDRGWYKLYIDTVLQADRGADLDFL VGKSSPDVTRESH
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=605, Percent_Identity=33.2231404958678, Blast_Score=250, Evalue=2e-67, Organism=Escherichia coli, GI1788157, Length=515, Percent_Identity=30.2912621359223, Blast_Score=184, Evalue=2e-47, Organism=Escherichia coli, GI2367371, Length=455, Percent_Identity=31.4285714285714, Blast_Score=162, Evalue=6e-41, Organism=Escherichia coli, GI1786464, Length=453, Percent_Identity=32.2295805739514, Blast_Score=149, Evalue=3e-37, Organism=Saccharomyces cerevisiae, GI6322476, Length=556, Percent_Identity=32.0143884892086, Blast_Score=261, Evalue=2e-70,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 62212; Mature: 62081
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS00886 ILVD_EDD_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKPLRSQRSYGKHDRDGFIHRSWIKGTGLPDHVFDGRPIIGVCNTWSELVTCQFHLRD CCCCCCHHHHHCCCCCCCCCEEEHECCCCCCCCHHCCCCCEEEECCCHHHHHHHHHHHHH LAEYVKRGVWEAGGVPIEFPAMSLPETQMRPTAMLFRNLLAMEVEESIRANPIDGVVLLG HHHHHHHCCCCCCCCEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC GCDKTTPGQLMGAASVDLPTMVVSSGPMLNGKWHGRDIGSGTDVWRFSEAVRAGEMSLTD CCCCCCCHHEEECCCCCCCEEEECCCCEECCEECCCCCCCCCCHHHHHHHHHCCCCHHHH FLSAESSMSRSHGTCNTMGTASTMASLMEALGVCLPNNAALPGVDSRRKTLAHLTGNRIV HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH QLVKDDVRLSQILTREAFENAILMHAAIGGSTNAVVHLLALAGRVGIELSLEDFDRIGRE HHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEHHHHHHCCCC VPLLVNLMPSGKYLMEEFCYAGGCPAVMKELGPLLRREAITVSGHTQGQIAEAAEVWNRE CCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHCCH VIGTREAPVGPSSGVWVLRGNLCPGGAILKPSAATPALLTHRGRAVVFEDIEDYHARIDD HCCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCHHHHCCCCEEEEECHHHHHHCCCC PDLPVDETSILVLKGCGPKGYPGMPEVGNMALPPKLLHRGVRDMVRISDARMSGTAYGTV CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE ILHVSPEAEAGGPLALVRNGDEIAFDGPSRTLDLLVDEAELARRRAEWEAARTPSQFDRG EEEECCCCCCCCCEEEEECCCEEEECCCCCEEHHEECHHHHHHHHHHHHHHCCCHHHCCC WYKLYIDTVLQADRGADLDFLVGKSSPDVTRESH CEEEHHHHHHHHCCCCCEEEEECCCCCCCCCCCC >Mature Secondary Structure ARKPLRSQRSYGKHDRDGFIHRSWIKGTGLPDHVFDGRPIIGVCNTWSELVTCQFHLRD CCCCCHHHHHCCCCCCCCCEEEHECCCCCCCCHHCCCCCEEEECCCHHHHHHHHHHHHH LAEYVKRGVWEAGGVPIEFPAMSLPETQMRPTAMLFRNLLAMEVEESIRANPIDGVVLLG HHHHHHHCCCCCCCCEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC GCDKTTPGQLMGAASVDLPTMVVSSGPMLNGKWHGRDIGSGTDVWRFSEAVRAGEMSLTD CCCCCCCHHEEECCCCCCCEEEECCCCEECCEECCCCCCCCCCHHHHHHHHHCCCCHHHH FLSAESSMSRSHGTCNTMGTASTMASLMEALGVCLPNNAALPGVDSRRKTLAHLTGNRIV HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH QLVKDDVRLSQILTREAFENAILMHAAIGGSTNAVVHLLALAGRVGIELSLEDFDRIGRE HHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEHHHHHHCCCC VPLLVNLMPSGKYLMEEFCYAGGCPAVMKELGPLLRREAITVSGHTQGQIAEAAEVWNRE CCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHCCH VIGTREAPVGPSSGVWVLRGNLCPGGAILKPSAATPALLTHRGRAVVFEDIEDYHARIDD HCCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCHHHHCCCCEEEEECHHHHHHCCCC PDLPVDETSILVLKGCGPKGYPGMPEVGNMALPPKLLHRGVRDMVRISDARMSGTAYGTV CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE ILHVSPEAEAGGPLALVRNGDEIAFDGPSRTLDLLVDEAELARRRAEWEAARTPSQFDRG EEEECCCCCCCCCEEEEECCCEEEECCCCCEEHHEECHHHHHHHHHHHHHHCCCHHHCCC WYKLYIDTVLQADRGADLDFLVGKSSPDVTRESH CEEEHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA