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The map label for this gene is ycbB [H]

Identifier: 197105408

GI number: 197105408

Start: 2177274

End: 2178725

Strand: Reverse

Name: ycbB [H]

Synonym: PHZ_c1945

Alternate gene names: 197105408

Gene position: 2178725-2177274 (Counterclockwise)

Preceding gene: 197105411

Following gene: 197105405

Centisome position: 54.52

GC content: 75.48

Gene sequence:

>1452_bases
GTGCGGGCGAGCGCGGCTGATCCTGCGAGCAAGGCGCCGCCGGGGCTGATCCGCCGGTTGCGGCTCGGCGAAGCCGCCAA
GGGCCTGGTCCTGGCGGCGGTCGTCGCCGCGCCCTGGATTCCCAGCGGCGCCTTCCACGGCACCCAGGCGGCGACGCGGC
CGGGCGAGGCCCGGTCGCTGGGCGCGCTTCAGAACCTCCTGGAGCGGCGGCCGGCGGATGACCCTCTGCGCGCCTTCTAC
GCGGCGCGGGACCATCGGCCGCTCTGGGTGACCGGCGGGGCGGAGGGCGGCCCCAGGCCGGAAGCCTACGAGGTGCTGGC
CCTGGTGCGCGCGGCCGCCCGAGACGGCCTCGACCCGGGCCGCTACCGGCCCGAGGCCCTGACTGTGCGGCTGCAGGCGG
CGCGCGGCGGCGCGCCGGCCGAGCTGGCGCGGGCCGAGGTGGCGGTGTCCGAAGCCTTCGCCGCCTATGTCGTCGACCTG
CGCACCCCGCCCGAGCCGGCGCGCCTGGCGTTCATGGACTCGGAGCTGACGCCGCCGGCGGTCGGGGCGCTGGCGGTTCT
CGACGCGGCCGCCCGCGCCCCGTCGCTGGCGGCCCACGTCCGCGCCGCCGCGCGCATGAATCCAGTGTACGAGGAGCTCC
GGGCCGCCCTGGCCGAGCACCGGGCCCGCTCAGGCGGGGTGGCGACCGAGCGGCTGATCCTGGCCAACATGGACCGCGCC
CGCGGCCTGCCGCGCGCCCTCGGGCCGCGCTTCATCCTCGTGAACGCCGCAAGCGCGGAGCTGCGCGTCTACGAGGACGG
CGAGGAGGTGGACCGGATGCCGGTGATCGTCGGCCGTCCGAGCGCGGCCACGCCCCCTATGGCCGGCGTGATCCGTTACG
CTCGCTTCCGCCCCTACTGGAACCTGCCGGAAGGCATGGTGCGCGAGGAGTTCGCGCCGCGGGTCCTCCGGGAAGGGCCG
GGGTTTCTGGCCGCTGCGGGCTTCGAGGCGCTCTCGGACTGGTCGCCGCAGGCCCGGGTGCTCGACCCGGCCGAGATCGA
CTGGCGCGCGGTCGCCCGAGGCGAACGGTCCCTTCGCCTGCGGCAGTCGCCGGGGCCGGGCAACATCCTGGGGAACGTCA
AGCTGATGCTGCCGAACCATTTGGGGATCTACCTGCACGACACCCCCGACAAGGCGTCGTTCCGGCGCTCGCGGCGGACA
CTGAGCGCCGGCTGCATTCGCCTCGCCGACGCCGATCGGCTGACGCGCCGGCTGCTGGAGTGGGAAGAGGGGGAGCGGCC
TCCGGAGGGCCTCAACCAGCGGGTCGACCTGCCTCGGGGCGTGCCGGTCTACATCCTCTATCTGACCGCCGAGCGGGGCG
AGGGTGGCGAGGTGCTTCGCCACCCCGACCTCTACGGACGCGACAGCCAGGTCATCGCCGCCCGCGCGGGCGATCAGAAC
CTGCGGACGTAG

Upstream 100 bases:

>100_bases
GCCGCCGGGGCCGACGCCTACGGCGCCGACACCGCGGCGCAGAGCGGCGCGACCAACGCCGGCGAGTTCGGCGACGACGC
GGCCGGCACGGCGATGGACC

Downstream 100 bases:

>100_bases
GCGACCTTCGTCGGCTTGACCTGGAAGCCCTCGTCGTCGGTCCAGGCGTCCTTCTCGCGCAGCTCGACGTCGCCGCTCAG
GCGGTCGTCGCCGCGGACGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MRASAADPASKAPPGLIRRLRLGEAAKGLVLAAVVAAPWIPSGAFHGTQAATRPGEARSLGALQNLLERRPADDPLRAFY
AARDHRPLWVTGGAEGGPRPEAYEVLALVRAAARDGLDPGRYRPEALTVRLQAARGGAPAELARAEVAVSEAFAAYVVDL
RTPPEPARLAFMDSELTPPAVGALAVLDAAARAPSLAAHVRAAARMNPVYEELRAALAEHRARSGGVATERLILANMDRA
RGLPRALGPRFILVNAASAELRVYEDGEEVDRMPVIVGRPSAATPPMAGVIRYARFRPYWNLPEGMVREEFAPRVLREGP
GFLAAAGFEALSDWSPQARVLDPAEIDWRAVARGERSLRLRQSPGPGNILGNVKLMLPNHLGIYLHDTPDKASFRRSRRT
LSAGCIRLADADRLTRRLLEWEEGERPPEGLNQRVDLPRGVPVYILYLTAERGEGGEVLRHPDLYGRDSQVIAARAGDQN
LRT

Sequences:

>Translated_483_residues
MRASAADPASKAPPGLIRRLRLGEAAKGLVLAAVVAAPWIPSGAFHGTQAATRPGEARSLGALQNLLERRPADDPLRAFY
AARDHRPLWVTGGAEGGPRPEAYEVLALVRAAARDGLDPGRYRPEALTVRLQAARGGAPAELARAEVAVSEAFAAYVVDL
RTPPEPARLAFMDSELTPPAVGALAVLDAAARAPSLAAHVRAAARMNPVYEELRAALAEHRARSGGVATERLILANMDRA
RGLPRALGPRFILVNAASAELRVYEDGEEVDRMPVIVGRPSAATPPMAGVIRYARFRPYWNLPEGMVREEFAPRVLREGP
GFLAAAGFEALSDWSPQARVLDPAEIDWRAVARGERSLRLRQSPGPGNILGNVKLMLPNHLGIYLHDTPDKASFRRSRRT
LSAGCIRLADADRLTRRLLEWEEGERPPEGLNQRVDLPRGVPVYILYLTAERGEGGEVLRHPDLYGRDSQVIAARAGDQN
LRT
>Mature_483_residues
MRASAADPASKAPPGLIRRLRLGEAAKGLVLAAVVAAPWIPSGAFHGTQAATRPGEARSLGALQNLLERRPADDPLRAFY
AARDHRPLWVTGGAEGGPRPEAYEVLALVRAAARDGLDPGRYRPEALTVRLQAARGGAPAELARAEVAVSEAFAAYVVDL
RTPPEPARLAFMDSELTPPAVGALAVLDAAARAPSLAAHVRAAARMNPVYEELRAALAEHRARSGGVATERLILANMDRA
RGLPRALGPRFILVNAASAELRVYEDGEEVDRMPVIVGRPSAATPPMAGVIRYARFRPYWNLPEGMVREEFAPRVLREGP
GFLAAAGFEALSDWSPQARVLDPAEIDWRAVARGERSLRLRQSPGPGNILGNVKLMLPNHLGIYLHDTPDKASFRRSRRT
LSAGCIRLADADRLTRRLLEWEEGERPPEGLNQRVDLPRGVPVYILYLTAERGEGGEVLRHPDLYGRDSQVIAARAGDQN
LRT

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=251, Percent_Identity=34.6613545816733, Blast_Score=151, Evalue=8e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 52316; Mature: 52316

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASAADPASKAPPGLIRRLRLGEAAKGLVLAAVVAAPWIPSGAFHGTQAATRPGEARSL
CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
GALQNLLERRPADDPLRAFYAARDHRPLWVTGGAEGGPRPEAYEVLALVRAAARDGLDPG
HHHHHHHHHCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC
RYRPEALTVRLQAARGGAPAELARAEVAVSEAFAAYVVDLRTPPEPARLAFMDSELTPPA
CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCCCCH
VGALAVLDAAARAPSLAAHVRAAARMNPVYEELRAALAEHRARSGGVATERLILANMDRA
HHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHEECCHHH
RGLPRALGPRFILVNAASAELRVYEDGEEVDRMPVIVGRPSAATPPMAGVIRYARFRPYW
CCCCHHHCCCEEEEEECCCEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCC
NLPEGMVREEFAPRVLREGPGFLAAAGFEALSDWSPQARVLDPAEIDWRAVARGERSLRL
CCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHCCCCCCEECCCCCCCHHHHHCCCCCEEE
RQSPGPGNILGNVKLMLPNHLGIYLHDTPDKASFRRSRRTLSAGCIRLADADRLTRRLLE
ECCCCCCCEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHEEECCHHHHHHHHHH
WEEGERPPEGLNQRVDLPRGVPVYILYLTAERGEGGEVLRHPDLYGRDSQVIAARAGDQN
HHCCCCCHHHCCCCCCCCCCCCEEEEEEEECCCCCCCEEECCCCCCCCCCEEEEECCCCC
LRT
CCC
>Mature Secondary Structure
MRASAADPASKAPPGLIRRLRLGEAAKGLVLAAVVAAPWIPSGAFHGTQAATRPGEARSL
CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
GALQNLLERRPADDPLRAFYAARDHRPLWVTGGAEGGPRPEAYEVLALVRAAARDGLDPG
HHHHHHHHHCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC
RYRPEALTVRLQAARGGAPAELARAEVAVSEAFAAYVVDLRTPPEPARLAFMDSELTPPA
CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCCCCH
VGALAVLDAAARAPSLAAHVRAAARMNPVYEELRAALAEHRARSGGVATERLILANMDRA
HHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHEECCHHH
RGLPRALGPRFILVNAASAELRVYEDGEEVDRMPVIVGRPSAATPPMAGVIRYARFRPYW
CCCCHHHCCCEEEEEECCCEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCC
NLPEGMVREEFAPRVLREGPGFLAAAGFEALSDWSPQARVLDPAEIDWRAVARGERSLRL
CCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHCCCCCCEECCCCCCCHHHHHCCCCCEEE
RQSPGPGNILGNVKLMLPNHLGIYLHDTPDKASFRRSRRTLSAGCIRLADADRLTRRLLE
ECCCCCCCEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHEEECCHHHHHHHHHH
WEEGERPPEGLNQRVDLPRGVPVYILYLTAERGEGGEVLRHPDLYGRDSQVIAARAGDQN
HHCCCCCHHHCCCCCCCCCCCCEEEEEEEECCCCCCCEEECCCCCCCCCCEEEEECCCCC
LRT
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]