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The map label for this gene is ydiF [H]

Identifier: 197105404

GI number: 197105404

Start: 2171940

End: 2173520

Strand: Reverse

Name: ydiF [H]

Synonym: PHZ_c1941

Alternate gene names: 197105404

Gene position: 2173520-2171940 (Counterclockwise)

Preceding gene: 197105405

Following gene: 197105397

Centisome position: 54.39

GC content: 76.91

Gene sequence:

>1581_bases
ATGCCTGCCCTCGTCACCCTCGACAGCCTCTCCGCCGCCACGCCTGACGGGCGGACCCTCTTCGACAACCTGACCCTGGT
CTTCGGGCCCGAGCGGGCCGGCCTTGTCGGACGCAACGGCGCGGGCAAGACGACGCTGGTCCGGCTGATCCTGGGCGAGC
TCGCGCCCGCCGCCGGCGCGGTCGGCGTGCAGGGACGGCTGGGCGTGCTGCGCCAGGCGGTGGGCCCCGCGCCCGGCGAA
ACCGCCGCGGACCTCCTGGGCGTCTCGGTGGCCCTGGCCCGGCTGCGGCGCATCGAGGCGGGCGCCGGGAGCGTGGACGA
CTTCGACCGGGCCGACTGGACGCTGGAGGCCCGGCTGGACGCGGCTCTGACAGAGGTGGGCCTTGCGGGGCTCGACCTGG
ATCGCCCCGCCGCCTCGCTCAGCGGCGGCCAGGCGACCCGCGCGCGGCTGGCGGGCCTGCTCGCCGCCCGGCCCGACATG
CTGGTGCTGGACGAGCCCACCAACAACCTCGACGCCGAGGCCCGCGAACTGGTCGCGGACGTGCTCGGCCGCTGGAAGGG
CGGGGCCATCGTCGTCAGCCACGACCGCGTGCTCCTGCGCCGGATGGACCGCATCGTCGAGCTGACCGGCCTCGGCGTCC
AGATCTATGGCGGCGGCTACGACCTCTACGCTGAGCGCAAGGCCGAGGCCGAGGCCGCGGCGGCCCGCGCCCTGGCCGAT
GCGGAGAGGGCCGCCGCCCGGATCGCGCGCGAGGCCCAGGCCGCGGCCGAACGGAAGGCCCGCCGCGACGCCGCCGGCCG
CCGCTCGCGGGTCGGCTCCAGCGATCCGAAGATCCTGCTCGACTTCCGGGCAGAGCGGGCCGAGGCGAGCGGCGGGCGCG
AGCGGCGCCTGGCCGAGCGCCTGAAGGCGGACGCCGCCCGCGACCTCGCCGAGGCCGAGGCGAAGGTGGAGCGGGTGCGC
CGCCTGGCCTTCGAGCTGCCGCCGTCGGGGCTGCCCGCCGGCAAGCCCGTCCTGGCGTTCGAGGCGGTCGGCTTCGCCTG
GCCCGGCGGGCGGCCGGTTCTGACGGACGTCTCGTTCCGCGTCTCGGGGCCCGAGCGGATCGCCGTCGTCGGGCCGAACG
GCGCGGGAAAGACGACCCTGCTCCGGCTGGCGGCCGGCGAGCTCGCGCCGACCCGGGGCGCGGTGGTGCGCAGCGTCCCG
GTGGCGTTCCTGGACCAGCACACGGCGCTCATGGGAGACGCGGGGACGCTCGTGGAGGCCTTCCGCCGGCTGAACCCCCG
GGCGGGCGAGAACGCGGCGCGGGCCGCTCTGGCGCGGTTCCTGTTCCGCAACCTGGCCGCCGACCGGCCGGTGGCTGCGC
TCAGCGGCGGCGAGCGCCTGCGGGCGGCGCTGGCCTGCGTCCTGATGGGCGATGCGCCGCCCGGCCTGCTGATCCTGGAC
GAGCCGACCAACCACCTGGATCTCGACAGCCTGGGCGCCGTCGAGGCCGCCTTGCGCAGCTACGACGGCGCCCTGCTGGT
GACGAGCCACGACGCCGACTTCCTGGCGGCCGTCGGCGTCGGGCGCGAGATTCGGCTCTAG

Upstream 100 bases:

>100_bases
CCTGGACCTAGATAGGGACCTCCAGCCGGGAGGATATCGACCATGCGCCTGACGACGGACACCCGCTCCGCCCGCCATCT
CCACGCGCACCCGGTCGCCC

Downstream 100 bases:

>100_bases
CCGAAGCCCTCCGCCAGCACGACGATGGCGTCAGAGCCGGCGATGCGGTCCTGCGCGATCGTCCGGTACTCGGGCGAGTC
CGCCCACGCGAGCGCCGCGT

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 526; Mature: 525

Protein sequence:

>526_residues
MPALVTLDSLSAATPDGRTLFDNLTLVFGPERAGLVGRNGAGKTTLVRLILGELAPAAGAVGVQGRLGVLRQAVGPAPGE
TAADLLGVSVALARLRRIEAGAGSVDDFDRADWTLEARLDAALTEVGLAGLDLDRPAASLSGGQATRARLAGLLAARPDM
LVLDEPTNNLDAEARELVADVLGRWKGGAIVVSHDRVLLRRMDRIVELTGLGVQIYGGGYDLYAERKAEAEAAAARALAD
AERAAARIAREAQAAAERKARRDAAGRRSRVGSSDPKILLDFRAERAEASGGRERRLAERLKADAARDLAEAEAKVERVR
RLAFELPPSGLPAGKPVLAFEAVGFAWPGGRPVLTDVSFRVSGPERIAVVGPNGAGKTTLLRLAAGELAPTRGAVVRSVP
VAFLDQHTALMGDAGTLVEAFRRLNPRAGENAARAALARFLFRNLAADRPVAALSGGERLRAALACVLMGDAPPGLLILD
EPTNHLDLDSLGAVEAALRSYDGALLVTSHDADFLAAVGVGREIRL

Sequences:

>Translated_526_residues
MPALVTLDSLSAATPDGRTLFDNLTLVFGPERAGLVGRNGAGKTTLVRLILGELAPAAGAVGVQGRLGVLRQAVGPAPGE
TAADLLGVSVALARLRRIEAGAGSVDDFDRADWTLEARLDAALTEVGLAGLDLDRPAASLSGGQATRARLAGLLAARPDM
LVLDEPTNNLDAEARELVADVLGRWKGGAIVVSHDRVLLRRMDRIVELTGLGVQIYGGGYDLYAERKAEAEAAAARALAD
AERAAARIAREAQAAAERKARRDAAGRRSRVGSSDPKILLDFRAERAEASGGRERRLAERLKADAARDLAEAEAKVERVR
RLAFELPPSGLPAGKPVLAFEAVGFAWPGGRPVLTDVSFRVSGPERIAVVGPNGAGKTTLLRLAAGELAPTRGAVVRSVP
VAFLDQHTALMGDAGTLVEAFRRLNPRAGENAARAALARFLFRNLAADRPVAALSGGERLRAALACVLMGDAPPGLLILD
EPTNHLDLDSLGAVEAALRSYDGALLVTSHDADFLAAVGVGREIRL
>Mature_525_residues
PALVTLDSLSAATPDGRTLFDNLTLVFGPERAGLVGRNGAGKTTLVRLILGELAPAAGAVGVQGRLGVLRQAVGPAPGET
AADLLGVSVALARLRRIEAGAGSVDDFDRADWTLEARLDAALTEVGLAGLDLDRPAASLSGGQATRARLAGLLAARPDML
VLDEPTNNLDAEARELVADVLGRWKGGAIVVSHDRVLLRRMDRIVELTGLGVQIYGGGYDLYAERKAEAEAAAARALADA
ERAAARIAREAQAAAERKARRDAAGRRSRVGSSDPKILLDFRAERAEASGGRERRLAERLKADAARDLAEAEAKVERVRR
LAFELPPSGLPAGKPVLAFEAVGFAWPGGRPVLTDVSFRVSGPERIAVVGPNGAGKTTLLRLAAGELAPTRGAVVRSVPV
AFLDQHTALMGDAGTLVEAFRRLNPRAGENAARAALARFLFRNLAADRPVAALSGGERLRAALACVLMGDAPPGLLILDE
PTNHLDLDSLGAVEAALRSYDGALLVTSHDADFLAAVGVGREIRL

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=521, Percent_Identity=29.9424184261036, Blast_Score=173, Evalue=4e-43,
Organism=Homo sapiens, GI10947135, Length=552, Percent_Identity=28.804347826087, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI69354671, Length=552, Percent_Identity=28.804347826087, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI10947137, Length=514, Percent_Identity=27.6264591439689, Blast_Score=142, Evalue=7e-34,
Organism=Homo sapiens, GI27881506, Length=514, Percent_Identity=27.2373540856031, Blast_Score=142, Evalue=8e-34,
Organism=Homo sapiens, GI9955963, Length=216, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI90421313, Length=148, Percent_Identity=32.4324324324324, Blast_Score=67, Evalue=6e-11,
Organism=Escherichia coli, GI1789751, Length=520, Percent_Identity=31.5384615384615, Blast_Score=195, Evalue=7e-51,
Organism=Escherichia coli, GI1787041, Length=526, Percent_Identity=30.2281368821293, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI1787182, Length=527, Percent_Identity=32.6375711574953, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI2367384, Length=544, Percent_Identity=29.7794117647059, Blast_Score=170, Evalue=2e-43,
Organism=Escherichia coli, GI1788165, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081709, Length=195, Percent_Identity=27.1794871794872, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788210, Length=207, Percent_Identity=29.4685990338164, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786253, Length=175, Percent_Identity=32, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788761, Length=190, Percent_Identity=34.7368421052632, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1786345, Length=223, Percent_Identity=31.390134529148, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI87081834, Length=185, Percent_Identity=34.0540540540541, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=524, Percent_Identity=28.6259541984733, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI17555318, Length=517, Percent_Identity=27.4661508704062, Blast_Score=161, Evalue=8e-40,
Organism=Caenorhabditis elegans, GI17553372, Length=523, Percent_Identity=29.0630975143403, Blast_Score=158, Evalue=7e-39,
Organism=Caenorhabditis elegans, GI17558664, Length=252, Percent_Identity=28.1746031746032, Blast_Score=70, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6320874, Length=529, Percent_Identity=27.2211720226843, Blast_Score=150, Evalue=4e-37,
Organism=Saccharomyces cerevisiae, GI6321121, Length=408, Percent_Identity=27.9411764705882, Blast_Score=143, Evalue=5e-35,
Organism=Saccharomyces cerevisiae, GI6324314, Length=173, Percent_Identity=31.7919075144509, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323278, Length=94, Percent_Identity=39.3617021276596, Blast_Score=74, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6325030, Length=179, Percent_Identity=32.9608938547486, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641342, Length=535, Percent_Identity=29.1588785046729, Blast_Score=184, Evalue=1e-46,
Organism=Drosophila melanogaster, GI24666836, Length=520, Percent_Identity=31.5384615384615, Blast_Score=178, Evalue=7e-45,
Organism=Drosophila melanogaster, GI24642252, Length=508, Percent_Identity=28.1496062992126, Blast_Score=159, Evalue=6e-39,
Organism=Drosophila melanogaster, GI18859989, Length=508, Percent_Identity=28.1496062992126, Blast_Score=159, Evalue=6e-39,
Organism=Drosophila melanogaster, GI116007184, Length=199, Percent_Identity=31.1557788944724, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221500365, Length=174, Percent_Identity=32.7586206896552, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 54980; Mature: 54849

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALVTLDSLSAATPDGRTLFDNLTLVFGPERAGLVGRNGAGKTTLVRLILGELAPAAGA
CCCEEEECCCCCCCCCCCEEHHCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
VGVQGRLGVLRQAVGPAPGETAADLLGVSVALARLRRIEAGAGSVDDFDRADWTLEARLD
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHH
AALTEVGLAGLDLDRPAASLSGGQATRARLAGLLAARPDMLVLDEPTNNLDAEARELVAD
HHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
VLGRWKGGAIVVSHDRVLLRRMDRIVELTGLGVQIYGGGYDLYAERKAEAEAAAARALAD
HHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEHHHHHHHHHHHHHHHHH
AERAAARIAREAQAAAERKARRDAAGRRSRVGSSDPKILLDFRAERAEASGGRERRLAER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHCCCCHHHHHHHH
LKADAARDLAEAEAKVERVRRLAFELPPSGLPAGKPVLAFEAVGFAWPGGRPVLTDVSFR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEECCCCCEEEEEEEEE
VSGPERIAVVGPNGAGKTTLLRLAAGELAPTRGAVVRSVPVAFLDQHTALMGDAGTLVEA
ECCCCEEEEECCCCCCCHHEEEEHHCCCCCCCCHHHHHCHHHHHHHHHHHHCCHHHHHHH
FRRLNPRAGENAARAALARFLFRNLAADRPVAALSGGERLRAALACVLMGDAPPGLLILD
HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHEECCCCCCEEEEC
EPTNHLDLDSLGAVEAALRSYDGALLVTSHDADFLAAVGVGREIRL
CCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCCC
>Mature Secondary Structure 
PALVTLDSLSAATPDGRTLFDNLTLVFGPERAGLVGRNGAGKTTLVRLILGELAPAAGA
CCEEEECCCCCCCCCCCEEHHCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
VGVQGRLGVLRQAVGPAPGETAADLLGVSVALARLRRIEAGAGSVDDFDRADWTLEARLD
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHH
AALTEVGLAGLDLDRPAASLSGGQATRARLAGLLAARPDMLVLDEPTNNLDAEARELVAD
HHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
VLGRWKGGAIVVSHDRVLLRRMDRIVELTGLGVQIYGGGYDLYAERKAEAEAAAARALAD
HHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEHHHHHHHHHHHHHHHHH
AERAAARIAREAQAAAERKARRDAAGRRSRVGSSDPKILLDFRAERAEASGGRERRLAER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHCCCCHHHHHHHH
LKADAARDLAEAEAKVERVRRLAFELPPSGLPAGKPVLAFEAVGFAWPGGRPVLTDVSFR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEECCCCCEEEEEEEEE
VSGPERIAVVGPNGAGKTTLLRLAAGELAPTRGAVVRSVPVAFLDQHTALMGDAGTLVEA
ECCCCEEEEECCCCCCCHHEEEEHHCCCCCCCCHHHHHCHHHHHHHHHHHHCCHHHHHHH
FRRLNPRAGENAARAALARFLFRNLAADRPVAALSGGERLRAALACVLMGDAPPGLLILD
HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHEECCCCCCEEEEC
EPTNHLDLDSLGAVEAALRSYDGALLVTSHDADFLAAVGVGREIRL
CCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]