| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is nadE [H]
Identifier: 197105394
GI number: 197105394
Start: 2164796
End: 2166841
Strand: Reverse
Name: nadE [H]
Synonym: PHZ_c1931
Alternate gene names: 197105394
Gene position: 2166841-2164796 (Counterclockwise)
Preceding gene: 197105395
Following gene: 197105393
Centisome position: 54.22
GC content: 69.5
Gene sequence:
>2046_bases GTGACGAAGTCGTTCTACGCCATCCACAGCCACGGCTTCGTCCGCGTCGCGGCCTGCACGCCGCGCGTCGCGGTAGGCGA TCCCGGGTTCAACGCCGCCGAGACGCTCCGCATGGCGCACGAGGGCGACGCCCGCGGCTGCGACCTGATGCTGTTCCCGG AGCTGGGGATCAGCGCCTACGCCATCGACGACCTGCTGCTGCAGGACGCCCTGCTGAAGCGGGTGGAGGACGAAATCGCG GCCCTCGCCGCCGCCAGCGCCAAGCTCTCGCCCGTGCTGGTGGTGGGCGCGCCCGTGGCCCGCAACGGCCGGCTCTACAA CTGCGCCGTGGCGATCGCCCGCGGGCGTATCCTGGGCGTCGTGCCCAAGAGCTATCTGCCCAACTACCGCGAGTACTACG AGAAGCGCTGGTTCGCGCCGGGCCACGGGGTCGAGGGACTGGAGGTCGAACTGGCCGGCCAGGCGGCGCCCTTCGGGACC GACCTGCTGTTCGAGGCGTCGGACCTGAAGGACTTCGTCTTCCACGCCGAGATCTGCGAGGACTTCTGGGCCCCGGCGCC GCCCTCAACGGAAGGCGCGCTCGCCGGCGCGCTTATCCTCTGTAATCTGTCGGCCTCGAACATCGTGGTGGGCAAGGCGG ACGAGCGGGCGCTGCTCTGCGCGTCGCAGTCGGCCCGCTGTTCGGCCGCCTACCTCTATTCGGCCGCGGGGCCGGGGGAG AGCACGACCGACCTGGCCTGGGACGGCCAGGCCTCGATCCACGAGCTCGGCCGCGAGCTGGCCTGCACCGACCGCTTCCC GACCGAGGCCCAGATGGCGGTGGCCGACATCGACGTCGAGAAGCTGCGGCTGGAGCGGATGCGCTCGCCCACGTTCAACG ACGCGGCGATCGCCCGCGGGCATCCCGAGCGCCGCTTCCGGCGGGTGCGCTTTGAGCACCGCCCGCACGGCAAGGATGTC GGCCTGCTGCGGCCGGTCGACCGATTCCCCTTCGTGCCGGACGACCCCGCCCGGCTCGACAAGGACTGCTACGAGGCCTT CAACATCCAGGTGCAAGGCCTTGTAAAGCGGCTGGAATCCACGAAGTCGCAGCACATCGTCATAGGCGTGTCAGGCGGCC TGGATTCCACCCACGCCCTGATCGTGGCGGCCAAGGCCTTCGACCGGCTGGGCAAGCCGCGGTCCGACATCCTGGGCTTC ACCATGCCGGGGTTCGCCACCAGCGAGGGGACGAAGTCCAACGCCTGGAAGCTGATGCGGGCGCTGGGCGTCACCGCCGA GGAGATCGACATCCGGCCGGCGGCGACCCAGCTCCTGAAGGACATGGGCCATCCGTTCGCCGCGGGCGAGCCGGTCTATG ACGTGACGTTCGAGAACGTGCAGGCGGGCCTTCGCACCGACTACCTGTTCCGCCTGGCCAACCAGCGCCACGGGTTCGTC CTGGGCACGGGCGACCTGTCCGAACTGGCGCTGGGGTGGTGCACCTACGGCGTCGGCGACCAGATGAGCCACTACAACGT CAACGGCTCGGTGGCGAAGACGCTGATCCAGCACCTGATCCGCTGGGTGGCCAAGACCGGCCAGTTCGACACGGCCGCGT CCGAGACCCTGCTGTCGGTGCTGGACACCGAGATCTCTCCCGAGCTGGTGCCCGCCGACGCCAGCGGCGCGATCCAGAGC ACCCAGGCCAAGATCGGCCCGTACGAGCTGCAGGACTTCAACGTCTACTGGATCACCCGCTACGGGCTTCGGCCGTCGAA AGTGGCCTTCCTGGCCTGGCACGCCTGGCGCGACGTGGCGGAGGGCAGCTGGCCGCCGCACTTCCCGGCCGAGGCCCGCA ACGCCTACGACCTGGCCACGATCAAAAAGTGGCTGTCGCTGTTCCTGTTCCGGTTCTTCGAGATCAGCCAGTTCAAGCGC TCGGCCATGCCCAACGGGCCGAAGGTGATCTCGGGCGGCAATCTCAGTCCGCGCGGCGACTGGCGCGCGCCGTCCGACGG CGTGGCGAGGGTCTGGCTCGAGGAGCTCGAGGCCAACGTGCCCTAG
Upstream 100 bases:
>100_bases GAAGGGATGAAGTACGGCAAGGTCTAGGTTTCCCAGGCCGATCGCCCACGCTATATATGCTCAAAGTGAGCATTTCTCTC GGACCGGAGACGGAGCCGTC
Downstream 100 bases:
>100_bases CGCACCCTAGCGCGCCTGGGCGCCCGCGGGGCAGCAGGAGGAGGCGGCCGGGCGCCGGCGGGCGGCCATGCGCCGGATCA ACGGCTCGATCCAGAACACC
Product: NAD synthetase
Products: NA
Alternate protein names: NAD(+) synthase [glutamine-hydrolyzing] [H]
Number of amino acids: Translated: 681; Mature: 680
Protein sequence:
>681_residues MTKSFYAIHSHGFVRVAACTPRVAVGDPGFNAAETLRMAHEGDARGCDLMLFPELGISAYAIDDLLLQDALLKRVEDEIA ALAAASAKLSPVLVVGAPVARNGRLYNCAVAIARGRILGVVPKSYLPNYREYYEKRWFAPGHGVEGLEVELAGQAAPFGT DLLFEASDLKDFVFHAEICEDFWAPAPPSTEGALAGALILCNLSASNIVVGKADERALLCASQSARCSAAYLYSAAGPGE STTDLAWDGQASIHELGRELACTDRFPTEAQMAVADIDVEKLRLERMRSPTFNDAAIARGHPERRFRRVRFEHRPHGKDV GLLRPVDRFPFVPDDPARLDKDCYEAFNIQVQGLVKRLESTKSQHIVIGVSGGLDSTHALIVAAKAFDRLGKPRSDILGF TMPGFATSEGTKSNAWKLMRALGVTAEEIDIRPAATQLLKDMGHPFAAGEPVYDVTFENVQAGLRTDYLFRLANQRHGFV LGTGDLSELALGWCTYGVGDQMSHYNVNGSVAKTLIQHLIRWVAKTGQFDTAASETLLSVLDTEISPELVPADASGAIQS TQAKIGPYELQDFNVYWITRYGLRPSKVAFLAWHAWRDVAEGSWPPHFPAEARNAYDLATIKKWLSLFLFRFFEISQFKR SAMPNGPKVISGGNLSPRGDWRAPSDGVARVWLEELEANVP
Sequences:
>Translated_681_residues MTKSFYAIHSHGFVRVAACTPRVAVGDPGFNAAETLRMAHEGDARGCDLMLFPELGISAYAIDDLLLQDALLKRVEDEIA ALAAASAKLSPVLVVGAPVARNGRLYNCAVAIARGRILGVVPKSYLPNYREYYEKRWFAPGHGVEGLEVELAGQAAPFGT DLLFEASDLKDFVFHAEICEDFWAPAPPSTEGALAGALILCNLSASNIVVGKADERALLCASQSARCSAAYLYSAAGPGE STTDLAWDGQASIHELGRELACTDRFPTEAQMAVADIDVEKLRLERMRSPTFNDAAIARGHPERRFRRVRFEHRPHGKDV GLLRPVDRFPFVPDDPARLDKDCYEAFNIQVQGLVKRLESTKSQHIVIGVSGGLDSTHALIVAAKAFDRLGKPRSDILGF TMPGFATSEGTKSNAWKLMRALGVTAEEIDIRPAATQLLKDMGHPFAAGEPVYDVTFENVQAGLRTDYLFRLANQRHGFV LGTGDLSELALGWCTYGVGDQMSHYNVNGSVAKTLIQHLIRWVAKTGQFDTAASETLLSVLDTEISPELVPADASGAIQS TQAKIGPYELQDFNVYWITRYGLRPSKVAFLAWHAWRDVAEGSWPPHFPAEARNAYDLATIKKWLSLFLFRFFEISQFKR SAMPNGPKVISGGNLSPRGDWRAPSDGVARVWLEELEANVP >Mature_680_residues TKSFYAIHSHGFVRVAACTPRVAVGDPGFNAAETLRMAHEGDARGCDLMLFPELGISAYAIDDLLLQDALLKRVEDEIAA LAAASAKLSPVLVVGAPVARNGRLYNCAVAIARGRILGVVPKSYLPNYREYYEKRWFAPGHGVEGLEVELAGQAAPFGTD LLFEASDLKDFVFHAEICEDFWAPAPPSTEGALAGALILCNLSASNIVVGKADERALLCASQSARCSAAYLYSAAGPGES TTDLAWDGQASIHELGRELACTDRFPTEAQMAVADIDVEKLRLERMRSPTFNDAAIARGHPERRFRRVRFEHRPHGKDVG LLRPVDRFPFVPDDPARLDKDCYEAFNIQVQGLVKRLESTKSQHIVIGVSGGLDSTHALIVAAKAFDRLGKPRSDILGFT MPGFATSEGTKSNAWKLMRALGVTAEEIDIRPAATQLLKDMGHPFAAGEPVYDVTFENVQAGLRTDYLFRLANQRHGFVL GTGDLSELALGWCTYGVGDQMSHYNVNGSVAKTLIQHLIRWVAKTGQFDTAASETLLSVLDTEISPELVPADASGAIQST QAKIGPYELQDFNVYWITRYGLRPSKVAFLAWHAWRDVAEGSWPPHFPAEARNAYDLATIKKWLSLFLFRFFEISQFKRS AMPNGPKVISGGNLSPRGDWRAPSDGVARVWLEELEANVP
Specific function: Can use both glutamine or ammonia as a nitrogen source [H]
COG id: COG0171
COG function: function code H; NAD synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CN hydrolase domain [H]
Homologues:
Organism=Homo sapiens, GI41393551, Length=621, Percent_Identity=25.2818035426731, Blast_Score=101, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17538756, Length=272, Percent_Identity=30.5147058823529, Blast_Score=97, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6321865, Length=290, Percent_Identity=27.5862068965517, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI24641841, Length=595, Percent_Identity=23.1932773109244, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI24641843, Length=595, Percent_Identity=23.1932773109244, Blast_Score=79, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014445 - InterPro: IPR022310 - InterPro: IPR003694 - InterPro: IPR003010 - InterPro: IPR014729 [H]
Pfam domain/function: PF00795 CN_hydrolase; PF02540 NAD_synthase [H]
EC number: =6.3.5.1 [H]
Molecular weight: Translated: 74534; Mature: 74403
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: PS50263 CN_HYDROLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKSFYAIHSHGFVRVAACTPRVAVGDPGFNAAETLRMAHEGDARGCDLMLFPELGISAY CCCCEEEEECCCEEEEEECCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHH AIDDLLLQDALLKRVEDEIAALAAASAKLSPVLVVGAPVARNGRLYNCAVAIARGRILGV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEEHHCCCEEEE VPKSYLPNYREYYEKRWFAPGHGVEGLEVELAGQAAPFGTDLLFEASDLKDFVFHAEICE CCHHHCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHH DFWAPAPPSTEGALAGALILCNLSASNIVVGKADERALLCASQSARCSAAYLYSAAGPGE HHCCCCCCCCCCHHEEEEEEEECCCCCEEEECCCCCEEEECCCCCCCCEEEEEECCCCCC STTDLAWDGQASIHELGRELACTDRFPTEAQMAVADIDVEKLRLERMRSPTFNDAAIARG CCCCEEECCCHHHHHHCHHHCCCCCCCCCHHEEEECCCHHHHHHHHHCCCCCCCCHHHCC HPERRFRRVRFEHRPHGKDVGLLRPVDRFPFVPDDPARLDKDCYEAFNIQVQGLVKRLES CHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHCHHHHHHHCCHHHHHHHHHHC TKSQHIVIGVSGGLDSTHALIVAAKAFDRLGKPRSDILGFTMPGFATSEGTKSNAWKLMR CCCCEEEEEECCCCCCCHHHEEEHHHHHHHCCCHHHHCCEECCCCCCCCCCCHHHHHHHH ALGVTAEEIDIRPAATQLLKDMGHPFAAGEPVYDVTFENVQAGLRTDYLFRLANQRHGFV HHCCCHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHCHHHHHHHHHHCCCCCEE LGTGDLSELALGWCTYGVGDQMSHYNVNGSVAKTLIQHLIRWVAKTGQFDTAASETLLSV EECCCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LDTEISPELVPADASGAIQSTQAKIGPYELQDFNVYWITRYGLRPSKVAFLAWHAWRDVA HHCCCCCCEECCCCCCCCHHHHCCCCCEEEEECEEEEEEECCCCCCCEEEEEHHHHHHHH EGSWPPHFPAEARNAYDLATIKKWLSLFLFRFFEISQFKRSAMPNGPKVISGGNLSPRGD CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC WRAPSDGVARVWLEELEANVP CCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure TKSFYAIHSHGFVRVAACTPRVAVGDPGFNAAETLRMAHEGDARGCDLMLFPELGISAY CCCEEEEECCCEEEEEECCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHH AIDDLLLQDALLKRVEDEIAALAAASAKLSPVLVVGAPVARNGRLYNCAVAIARGRILGV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEEHHCCCEEEE VPKSYLPNYREYYEKRWFAPGHGVEGLEVELAGQAAPFGTDLLFEASDLKDFVFHAEICE CCHHHCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHH DFWAPAPPSTEGALAGALILCNLSASNIVVGKADERALLCASQSARCSAAYLYSAAGPGE HHCCCCCCCCCCHHEEEEEEEECCCCCEEEECCCCCEEEECCCCCCCCEEEEEECCCCCC STTDLAWDGQASIHELGRELACTDRFPTEAQMAVADIDVEKLRLERMRSPTFNDAAIARG CCCCEEECCCHHHHHHCHHHCCCCCCCCCHHEEEECCCHHHHHHHHHCCCCCCCCHHHCC HPERRFRRVRFEHRPHGKDVGLLRPVDRFPFVPDDPARLDKDCYEAFNIQVQGLVKRLES CHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHCHHHHHHHCCHHHHHHHHHHC TKSQHIVIGVSGGLDSTHALIVAAKAFDRLGKPRSDILGFTMPGFATSEGTKSNAWKLMR CCCCEEEEEECCCCCCCHHHEEEHHHHHHHCCCHHHHCCEECCCCCCCCCCCHHHHHHHH ALGVTAEEIDIRPAATQLLKDMGHPFAAGEPVYDVTFENVQAGLRTDYLFRLANQRHGFV HHCCCHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHCHHHHHHHHHHCCCCCEE LGTGDLSELALGWCTYGVGDQMSHYNVNGSVAKTLIQHLIRWVAKTGQFDTAASETLLSV EECCCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LDTEISPELVPADASGAIQSTQAKIGPYELQDFNVYWITRYGLRPSKVAFLAWHAWRDVA HHCCCCCCEECCCCCCCCHHHHCCCCCEEEEECEEEEEEECCCCCCCEEEEEHHHHHHHH EGSWPPHFPAEARNAYDLATIKKWLSLFLFRFFEISQFKRSAMPNGPKVISGGNLSPRGD CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC WRAPSDGVARVWLEELEANVP CCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]