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The map label for this gene is yfmJ [H]

Identifier: 197105085

GI number: 197105085

Start: 1828974

End: 1829972

Strand: Reverse

Name: yfmJ [H]

Synonym: PHZ_c1622

Alternate gene names: 197105085

Gene position: 1829972-1828974 (Counterclockwise)

Preceding gene: 197105086

Following gene: 197105083

Centisome position: 45.79

GC content: 72.97

Gene sequence:

>999_bases
ATGTCCGAGACCAACCGCCAGTTCGTCCTCGCCGAGCTGCCCCAGGGCCACCTGACCCCCGCCCATTTCCGGCTGGTGGA
GGGCGAACGCCCGACGGCCGGGCCGGGAGAGGTCGTCGTCCGCACGCGCTACGTCTCGCTGGATGCGGCGAACCGGGCCT
GGATGCAGGGCGCGACCTACCGCTCGGCCCTGGCCGCGGGCGACGTCATGGCCGGCGGCGCCCTGGCCGAGGTGGTGGAG
TCCAACGCCCCCGAGCTGGCGCCGGGCGACCTCGTGTTCGCCGACACCGGCTGGCAGGACTACGCCGCCCTCCCGGCCCG
GCGCCTGTCGAAGCTGCCGAAACTGGAGCCGATGACCCACCTGCTCAGCGTCTACGGCGTCGCGGGCCTGACCGCCTACT
TCGGCCTGCTGGAATGCGGCCGCCCCCAGGCGGGCGAGACGGTCGTGGTGTCCGCCGCCGCGGGCTCGGTGGGCTCGATC
GTCGGCCAGATCGCCCGGATCCAGGGCTGCCGGGTGATCGGGATCGCCGGGGGGGCCGAGAAGGGCCGCTGGCTGACCGA
CGAGCTCGGGTTCGACGCCGCCGTCGACTACAAGGCCGCCGACTTCAAGCGCCAGCTCCGCGAGGCCGTGGGCGAGGGGA
TCGACGTCTACTTCGACAACGTCGGCGGCGAGGTCTTCGAGGCCTGCCTGTTCGGCATGAAGACCTTCGGCCGGATCGCC
TGCTGCGGCGCCGTCTCGCAGTACGACGGCGAGGCGCCGCGCCACGGCCCCCGCGGCGTGCCGGGGCTGATCGTCACCAA
GCGCCTGACCCTGCGCGGCTTCATCGTCTCGGACTTCGACGACCGGCGCGAGGCGGCGCTCGCCGACCTGCAGGCCTGGG
TCGGCGCCGGAAAGCTCAAGGTGCAGGAGGACGTCATCGACGGCTTCGAGAACCTGCCCCAGGCGCTCGTCGGCCTGCTC
CACGGCGAGAACCGCGGCAAGCGGATGGTGCGGGTCTAG

Upstream 100 bases:

>100_bases
CCCCCGGCTTCAACCTCTTCTACGCCGACCTCGAAGCCGACGCCCAGGCCCGGCTCGCCGCCTTCCAGGCGCGCTAGCCC
CCGACACAGGAGACGCCGCC

Downstream 100 bases:

>100_bases
CCGGCGTCCCTCAGCCCGAGGTTCGCCTTCCAGTCGAACAGCTCCTGCAGCACCTGCAGGGCCTTGCCGCGCTCGCCGGC
GAGCTCGGGGTCGCGCATCA

Product: zinc-containing alcohol dehydrogenase superfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSETNRQFVLAELPQGHLTPAHFRLVEGERPTAGPGEVVVRTRYVSLDAANRAWMQGATYRSALAAGDVMAGGALAEVVE
SNAPELAPGDLVFADTGWQDYAALPARRLSKLPKLEPMTHLLSVYGVAGLTAYFGLLECGRPQAGETVVVSAAAGSVGSI
VGQIARIQGCRVIGIAGGAEKGRWLTDELGFDAAVDYKAADFKRQLREAVGEGIDVYFDNVGGEVFEACLFGMKTFGRIA
CCGAVSQYDGEAPRHGPRGVPGLIVTKRLTLRGFIVSDFDDRREAALADLQAWVGAGKLKVQEDVIDGFENLPQALVGLL
HGENRGKRMVRV

Sequences:

>Translated_332_residues
MSETNRQFVLAELPQGHLTPAHFRLVEGERPTAGPGEVVVRTRYVSLDAANRAWMQGATYRSALAAGDVMAGGALAEVVE
SNAPELAPGDLVFADTGWQDYAALPARRLSKLPKLEPMTHLLSVYGVAGLTAYFGLLECGRPQAGETVVVSAAAGSVGSI
VGQIARIQGCRVIGIAGGAEKGRWLTDELGFDAAVDYKAADFKRQLREAVGEGIDVYFDNVGGEVFEACLFGMKTFGRIA
CCGAVSQYDGEAPRHGPRGVPGLIVTKRLTLRGFIVSDFDDRREAALADLQAWVGAGKLKVQEDVIDGFENLPQALVGLL
HGENRGKRMVRV
>Mature_331_residues
SETNRQFVLAELPQGHLTPAHFRLVEGERPTAGPGEVVVRTRYVSLDAANRAWMQGATYRSALAAGDVMAGGALAEVVES
NAPELAPGDLVFADTGWQDYAALPARRLSKLPKLEPMTHLLSVYGVAGLTAYFGLLECGRPQAGETVVVSAAAGSVGSIV
GQIARIQGCRVIGIAGGAEKGRWLTDELGFDAAVDYKAADFKRQLREAVGEGIDVYFDNVGGEVFEACLFGMKTFGRIAC
CGAVSQYDGEAPRHGPRGVPGLIVTKRLTLRGFIVSDFDDRREAALADLQAWVGAGKLKVQEDVIDGFENLPQALVGLLH
GENRGKRMVRV

Specific function: Putative quinone oxidoreductase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=333, Percent_Identity=39.6396396396396, Blast_Score=221, Evalue=8e-58,
Organism=Homo sapiens, GI226059133, Length=333, Percent_Identity=39.6396396396396, Blast_Score=221, Evalue=8e-58,
Organism=Homo sapiens, GI226246682, Length=342, Percent_Identity=36.2573099415205, Blast_Score=192, Evalue=3e-49,
Organism=Homo sapiens, GI226246680, Length=342, Percent_Identity=36.2573099415205, Blast_Score=192, Evalue=3e-49,
Organism=Homo sapiens, GI22748929, Length=342, Percent_Identity=36.2573099415205, Blast_Score=192, Evalue=3e-49,
Organism=Homo sapiens, GI226056130, Length=306, Percent_Identity=38.562091503268, Blast_Score=184, Evalue=9e-47,
Organism=Homo sapiens, GI28557745, Length=320, Percent_Identity=28.4375, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI22538446, Length=272, Percent_Identity=25, Blast_Score=66, Evalue=6e-11,
Organism=Homo sapiens, GI22538444, Length=272, Percent_Identity=25, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI226510941, Length=337, Percent_Identity=44.213649851632, Blast_Score=268, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI133901712, Length=355, Percent_Identity=32.6760563380282, Blast_Score=161, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI133901710, Length=355, Percent_Identity=32.6760563380282, Blast_Score=161, Evalue=5e-40,
Organism=Saccharomyces cerevisiae, GI6323504, Length=359, Percent_Identity=31.1977715877437, Blast_Score=149, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35400; Mature: 35269

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETNRQFVLAELPQGHLTPAHFRLVEGERPTAGPGEVVVRTRYVSLDAANRAWMQGATY
CCCCCCEEEEEECCCCCCCHHHEEEECCCCCCCCCCCEEEEEEEEEECCCCHHHHCCCHH
RSALAAGDVMAGGALAEVVESNAPELAPGDLVFADTGWQDYAALPARRLSKLPKLEPMTH
HHHHHHCCHHCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHH
LLSVYGVAGLTAYFGLLECGRPQAGETVVVSAAAGSVGSIVGQIARIQGCRVIGIAGGAE
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCC
KGRWLTDELGFDAAVDYKAADFKRQLREAVGEGIDVYFDNVGGEVFEACLFGMKTFGRIA
CCCEEHHHCCCCCEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
CCGAVSQYDGEAPRHGPRGVPGLIVTKRLTLRGFIVSDFDDRREAALADLQAWVGAGKLK
HHHHHHHCCCCCCCCCCCCCCCEEEEEEHEEEEEEECCCCHHHHHHHHHHHHHHCCCCEE
VQEDVIDGFENLPQALVGLLHGENRGKRMVRV
EHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC
>Mature Secondary Structure 
SETNRQFVLAELPQGHLTPAHFRLVEGERPTAGPGEVVVRTRYVSLDAANRAWMQGATY
CCCCCEEEEEECCCCCCCHHHEEEECCCCCCCCCCCEEEEEEEEEECCCCHHHHCCCHH
RSALAAGDVMAGGALAEVVESNAPELAPGDLVFADTGWQDYAALPARRLSKLPKLEPMTH
HHHHHHCCHHCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHH
LLSVYGVAGLTAYFGLLECGRPQAGETVVVSAAAGSVGSIVGQIARIQGCRVIGIAGGAE
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCC
KGRWLTDELGFDAAVDYKAADFKRQLREAVGEGIDVYFDNVGGEVFEACLFGMKTFGRIA
CCCEEHHHCCCCCEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
CCGAVSQYDGEAPRHGPRGVPGLIVTKRLTLRGFIVSDFDDRREAALADLQAWVGAGKLK
HHHHHHHCCCCCCCCCCCCCCCEEEEEEHEEEEEEECCCCHHHHHHHHHHHHHHCCCCEE
VQEDVIDGFENLPQALVGLLHGENRGKRMVRV
EHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]