| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
Click here to switch to the map view.
The map label for this gene is yciK [H]
Identifier: 197105000
GI number: 197105000
Start: 1737736
End: 1738482
Strand: Reverse
Name: yciK [H]
Synonym: PHZ_c1537
Alternate gene names: 197105000
Gene position: 1738482-1737736 (Counterclockwise)
Preceding gene: 197105001
Following gene: 197104989
Centisome position: 43.5
GC content: 71.89
Gene sequence:
>747_bases ATGCCCGACCTGCCCCTTACCGACCGTATCGCCCTCGTCACCGGCGCCAGCCGCGGCATCGGCCGCGCCGCCGCCCTCGC CCTGGCCAAGGCCGGCGCCCACGTGGTCGCCGTCGCCCGCACCCAGGGCGGTCTCGAGGAGCTGGACGACGAGATCCGCG CCGCCACTGGCAAGTCCGCCACCCTCGTGCCGATGGACATCGCCGAGGAAGGCGCGCTGGACCAGCTCGGCCTGGCCGTC CACCAGCGGTTCGGCCGCCTGGACATCCTCGTCCACGCCGCCGCGATCCTGGGGCCCATCACGCCGGTGTCGCACATCGA GCCCAAGCACTGGGCGCGCGTGATGGACGTGAACCTCACCGCCTCGTATCGCCTGATCCGCAGCGCAGAACCCCTCCTGC GCGCCTCCGAGCGCCCCCGGGCGATCTTCCTGACCACCAGCCGCGCGCACAATCCGAAGGCTTTCTGGGGCCCCTACGGA GCCTCCAAGGCCGCGCTGGAGAACTTGGTCCGCACCTGGGCCGACGAGCTGGAGCAGACCAAGATCCGGGCCGTCCTGCT CGAGCCCGGCGCGATGCGCACGAAGATGCGCGCCGAGGCCATGCCGGGCGAGGATCCGATGAGCCTGCCCGACCCCTCCG AGATCGGGCCGCTGGTGGTGGAGCTCGCCCAGGCCGACCTGGGCCTGCCCACGTCTAACGTGGTGTTCGCCGACTGGAAG AGGGCCGGGAAGCTCGCTTCGGCTTGA
Upstream 100 bases:
>100_bases CTGATCTTCCACCAGATGCAGCTGATGGCCTGCGCCGCCATGGCCCAGCGCTACGCGCGGCGGCCTGACATCGAGGCCGT AAGCGGCTAGAGAGCCGCCC
Downstream 100 bases:
>100_bases CGCCGGGCCGGGCCAGCTTGGCCGCCCGTCCCCGGGTCGGCGTGCGCTTGGCCTTGGCCGGGCCTTTCGGCTTCGGCGGA CCGCCCTCCCCCTTCGGCTT
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MPDLPLTDRIALVTGASRGIGRAAALALAKAGAHVVAVARTQGGLEELDDEIRAATGKSATLVPMDIAEEGALDQLGLAV HQRFGRLDILVHAAAILGPITPVSHIEPKHWARVMDVNLTASYRLIRSAEPLLRASERPRAIFLTTSRAHNPKAFWGPYG ASKAALENLVRTWADELEQTKIRAVLLEPGAMRTKMRAEAMPGEDPMSLPDPSEIGPLVVELAQADLGLPTSNVVFADWK RAGKLASA
Sequences:
>Translated_248_residues MPDLPLTDRIALVTGASRGIGRAAALALAKAGAHVVAVARTQGGLEELDDEIRAATGKSATLVPMDIAEEGALDQLGLAV HQRFGRLDILVHAAAILGPITPVSHIEPKHWARVMDVNLTASYRLIRSAEPLLRASERPRAIFLTTSRAHNPKAFWGPYG ASKAALENLVRTWADELEQTKIRAVLLEPGAMRTKMRAEAMPGEDPMSLPDPSEIGPLVVELAQADLGLPTSNVVFADWK RAGKLASA >Mature_247_residues PDLPLTDRIALVTGASRGIGRAAALALAKAGAHVVAVARTQGGLEELDDEIRAATGKSATLVPMDIAEEGALDQLGLAVH QRFGRLDILVHAAAILGPITPVSHIEPKHWARVMDVNLTASYRLIRSAEPLLRASERPRAIFLTTSRAHNPKAFWGPYGA SKAALENLVRTWADELEQTKIRAVLLEPGAMRTKMRAEAMPGEDPMSLPDPSEIGPLVVELAQADLGLPTSNVVFADWKR AGKLASA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI109715829, Length=207, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI32483357, Length=196, Percent_Identity=30.1020408163265, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI33667109, Length=204, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI7657478, Length=212, Percent_Identity=27.3584905660377, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI20149619, Length=248, Percent_Identity=28.2258064516129, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI5031737, Length=191, Percent_Identity=29.3193717277487, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI209862901, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI19923983, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI4504505, Length=230, Percent_Identity=28.695652173913, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=30.1587301587302, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI19923817, Length=200, Percent_Identity=26.5, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI126723750, Length=216, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI7705925, Length=197, Percent_Identity=32.48730964467, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1787526, Length=223, Percent_Identity=37.6681614349776, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI87082160, Length=199, Percent_Identity=30.1507537688442, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1789378, Length=244, Percent_Identity=31.1475409836066, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787335, Length=194, Percent_Identity=29.8969072164948, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1786812, Length=194, Percent_Identity=28.8659793814433, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI2367175, Length=225, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=25.414364640884, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=27.1604938271605, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI87082100, Length=240, Percent_Identity=29.1666666666667, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790717, Length=201, Percent_Identity=25.8706467661692, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787905, Length=192, Percent_Identity=30.2083333333333, Blast_Score=60, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17562910, Length=205, Percent_Identity=29.7560975609756, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17560676, Length=229, Percent_Identity=28.82096069869, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562908, Length=208, Percent_Identity=34.1346153846154, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562906, Length=213, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI71994604, Length=193, Percent_Identity=33.160621761658, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17551412, Length=203, Percent_Identity=30.5418719211823, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17561402, Length=210, Percent_Identity=27.1428571428571, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562904, Length=215, Percent_Identity=28.3720930232558, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560150, Length=245, Percent_Identity=28.1632653061224, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193204405, Length=203, Percent_Identity=31.0344827586207, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17555612, Length=226, Percent_Identity=30.5309734513274, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17531453, Length=198, Percent_Identity=32.8282828282828, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17568967, Length=231, Percent_Identity=27.7056277056277, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17538182, Length=232, Percent_Identity=27.1551724137931, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17560220, Length=202, Percent_Identity=29.7029702970297, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17536025, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17559104, Length=208, Percent_Identity=27.8846153846154, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71982365, Length=144, Percent_Identity=28.4722222222222, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17538486, Length=206, Percent_Identity=31.0679611650485, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17560332, Length=202, Percent_Identity=29.7029702970297, Blast_Score=67, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6322227, Length=202, Percent_Identity=32.6732673267327, Blast_Score=96, Evalue=5e-21, Organism=Saccharomyces cerevisiae, GI6322226, Length=203, Percent_Identity=30.5418719211823, Blast_Score=94, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6322861, Length=251, Percent_Identity=30.6772908366534, Blast_Score=83, Evalue=5e-17, Organism=Drosophila melanogaster, GI21355319, Length=242, Percent_Identity=30.9917355371901, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI28571526, Length=196, Percent_Identity=32.6530612244898, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI21357041, Length=199, Percent_Identity=30.6532663316583, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24644339, Length=199, Percent_Identity=30.1507537688442, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI23397609, Length=196, Percent_Identity=30.1020408163265, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI17737361, Length=235, Percent_Identity=27.2340425531915, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26490; Mature: 26359
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDLPLTDRIALVTGASRGIGRAAALALAKAGAHVVAVARTQGGLEELDDEIRAATGKSA CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCC TLVPMDIAEEGALDQLGLAVHQRFGRLDILVHAAAILGPITPVSHIEPKHWARVMDVNLT EEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEEECCH ASYRLIRSAEPLLRASERPRAIFLTTSRAHNPKAFWGPYGASKAALENLVRTWADELEQT HHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHH KIRAVLLEPGAMRTKMRAEAMPGEDPMSLPDPSEIGPLVVELAQADLGLPTSNVVFADWK HEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECHH RAGKLASA HCCCCCCC >Mature Secondary Structure PDLPLTDRIALVTGASRGIGRAAALALAKAGAHVVAVARTQGGLEELDDEIRAATGKSA CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCC TLVPMDIAEEGALDQLGLAVHQRFGRLDILVHAAAILGPITPVSHIEPKHWARVMDVNLT EEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEEECCH ASYRLIRSAEPLLRASERPRAIFLTTSRAHNPKAFWGPYGASKAALENLVRTWADELEQT HHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHH KIRAVLLEPGAMRTKMRAEAMPGEDPMSLPDPSEIGPLVVELAQADLGLPTSNVVFADWK HEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECHH RAGKLASA HCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 1885549 [H]