| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is trbE [H]
Identifier: 197104978
GI number: 197104978
Start: 1717836
End: 1720286
Strand: Direct
Name: trbE [H]
Synonym: PHZ_c1515
Alternate gene names: 197104978
Gene position: 1717836-1720286 (Clockwise)
Preceding gene: 197104977
Following gene: 197104979
Centisome position: 42.99
GC content: 69.52
Gene sequence:
>2451_bases ATGTTCGATCTTCGCGAGTACCGCCGGCGTGCGGCCCAGCTTCCCGACTTTCTGCCGTGGGCGGCGCTCGTCGAGCCGGG CGTGGTGCTCAATAAGGACGGGGGGTTTCAGCGCACAGCGCGCTTCCGCGGGCCCGACCTGGACTCGGCGACCGCGTCCG AGCTCGTCTCGGCCGCGGGGCGGCTGAACAATGCGCTGCGACGCCTCGGGTCCGGCTGGGCCGTGTTCGTCGAAGCCCAG CGCAATGCGGCCGACGTGTATCCGCTTAGCGACTTCCCCGACCCGGTGTCGGCGCTGGTGGACGAGGAGCGCCGGGCTCA GTTCGAGGAACATGGAGCGCATTTCGACAGCGCCTACTTCCTGACCTTCGTCTTCCTGCCGCCCGCCGAGAACACCGCCC GGGCTGAGTCCTGGCTGTACGAGGGGCGAGAGCGCCGCGGCGTCGACTGGCGCGAGGCGCTGGCCGGCTTCGTCGACCGG ACGGATCGTGTGCTGGCGCTGCTCGAAGGCTTTGTGCCCGAAGCGGAGTGGCTCACCGACGCCGAGACCCTGACCTACCT GCATTCGACGGTGTCGACCCACCGCCACCGCGTCGGCGTGCCGGACACGCCCATGCATCTGGATGTGCTGCTGGCCGACC AGCCGCTCACCGGCGGCCTCGAGCCGCGGCTGGGAACGGCGCACCTGCGGGTGCTGACCATCAGCGGCTTCCCGGCCGCC ACCTGGCCCGGGCTGCTCGACGACCTCAATCGCCTGGCGTTTCCCTACCGCTGGTCCACGCGCGCGATCTGCCTGGACAA GGTCGACGCGGCCAAGCTGCTGGGCCGGATCCGCCGCCAATGGTTCGCCAAGCGCAAGTCGATCATGGCGATACTGAAAG AGGTGCTGACCAACGAAGCCGCGGCGCTGGTCGACACCGACGCTCAGAACAAGGCGCTCGATGCCGACGAGGCCCTACAG GACCTGGGCGCCGACGTGGTCGGGCATGCCTTCGTGACCGCCACGGTGTGCGTCTGGGACGAGGACGCGGGCCGCGCCGA CGCGAAGCTGCGGCTGGTCGAGAAGGCAATCCAGGCCCGCGACTTCACCTGTATGGTTGAGAGCATCAACGCGGTGGAAG CCTGGCTCGGCAGCCTTCCGGGCCACGCCTACGCCAATGTGCGCCAGCCGCCGATCTCCACCCTGAACCTGGCCCACATG ATCCCGCTTTCGGCGGTGTGGGCTGGGCCGCAGCGGAACGCGCACCTGAACGGGCCGCCGCTGTTCTTCGCCCAGACGGA AGGCTCGACACCCTTCAGGTTCTCGACCCACGTCGGGGACGTCGGCCACAGCATGGTGGTGGGGCCGACCGGGGCAGGGA AGAGCGTGCTGTTGGCGCTGATGGCCCTGCAGTTCCGCCGCTACCCCGCCGGCCAGGTCTTCGCCTTCGACTTCGGCGGC TCGATCCGAGCCGCGGCGCTGGCGATGGGCGGCGACTTCCACGATCTCGGCGGAGCGCTCGCGGACGATGAGACTCCGCC GGTCGCCCTGCAGCCGCTGGGCCGCATCCAAGATCTGGCTGAACGCGCGTGGGCTTCGGAGTGGCTGGCCGGCGTGCTGG CCCGAGAAGGTGTCGCGGTTACGCCTGAGGTGAAGGAGCATCTCTGGACCGCGCTCGGATCGCTGGCCTCGGCCCCCGAG GCCGAGCGGACCCTCACCGGCCTGTCGGTCCTGCTGCAGTCCAACGCGCTCAAGCGCGCCCTTCAGCCCTACACCGTCGC GGGTCCGTGGGGTCGGCTCCTCGACGCAGAGAGCGAGCGCCTGGGTTCGGCCTCCGTGCAGGCGTTCGAGACCGAGGGGC TCGTGGGCTCGGCGGCGGCGCCGGCCGTGCTCAGCTACCTGTTCCATCGAATCCAGTCGCGGCTCGATGGGCGCCCGACC CTGGTGGTGGTCGACGAAGGCTGGCTCGCCCTCGACGACGCCACCTTCGGAGCCCAGCTGCGGGAATGGCTGAAGACGCT GCGCAAGAAGAACGCCTCCGTGGTGTTCGCCACCCAGTCCCTGGCCGACATTGAGACGAGCGCGATCGCAGCCTCGATCA TCGAAAGCTGCCCCACCCGCATCTTCCTGCCGAACGACCGCGCGCAGGAGCCGCAGATCGCAGCGGCCTACGCGAGGTTC GGTCTCAACGAGCGGCAGGTGGAGATCCTGGGTCGGGCGATCCCGAAGCGCGACTACTACTGCCAGTCCCGTCGCGGGAA CCGGCTCTTCGAGCTCGGGCTAGGGCCGGTGGCGCTCGCCTTCTGCGCCGCTTCCGCCAAGGCGGACCAGCTGGTGATCG CCGAGCTTCTTGAACACCACGGCCCGGGTGGGTTCGCGGCCGCTTGGCTCGAACACCGGGGGCTTCCGTGGGCGGCGGAC CTGATCCGCTTGCAGGCCAAAGCGCCACCTCAATTGGAGACCGCTCGATGA
Upstream 100 bases:
>100_bases GGCCACGCCTTCGCCGTCTGGGCCGCCAAGCGCGACCCCCACTTCGTCGAGGTGGTGCGGCGGCACGTCCGCATCCCGCC CTATCTGGGAATCTGACGCG
Downstream 100 bases:
>100_bases AGACCCGCACCCCTTGGCTGGCGGCGCTCGTGTGCTCGACCAGCCTCGTTCTGGCCTTGCCCACCCCAGCCGGGGCGCAG CTCACCGTCTATGACCCAAC
Product: conjugal transfer ATPase TrbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 816; Mature: 816
Protein sequence:
>816_residues MFDLREYRRRAAQLPDFLPWAALVEPGVVLNKDGGFQRTARFRGPDLDSATASELVSAAGRLNNALRRLGSGWAVFVEAQ RNAADVYPLSDFPDPVSALVDEERRAQFEEHGAHFDSAYFLTFVFLPPAENTARAESWLYEGRERRGVDWREALAGFVDR TDRVLALLEGFVPEAEWLTDAETLTYLHSTVSTHRHRVGVPDTPMHLDVLLADQPLTGGLEPRLGTAHLRVLTISGFPAA TWPGLLDDLNRLAFPYRWSTRAICLDKVDAAKLLGRIRRQWFAKRKSIMAILKEVLTNEAAALVDTDAQNKALDADEALQ DLGADVVGHAFVTATVCVWDEDAGRADAKLRLVEKAIQARDFTCMVESINAVEAWLGSLPGHAYANVRQPPISTLNLAHM IPLSAVWAGPQRNAHLNGPPLFFAQTEGSTPFRFSTHVGDVGHSMVVGPTGAGKSVLLALMALQFRRYPAGQVFAFDFGG SIRAAALAMGGDFHDLGGALADDETPPVALQPLGRIQDLAERAWASEWLAGVLAREGVAVTPEVKEHLWTALGSLASAPE AERTLTGLSVLLQSNALKRALQPYTVAGPWGRLLDAESERLGSASVQAFETEGLVGSAAAPAVLSYLFHRIQSRLDGRPT LVVVDEGWLALDDATFGAQLREWLKTLRKKNASVVFATQSLADIETSAIAASIIESCPTRIFLPNDRAQEPQIAAAYARF GLNERQVEILGRAIPKRDYYCQSRRGNRLFELGLGPVALAFCAASAKADQLVIAELLEHHGPGGFAAAWLEHRGLPWAAD LIRLQAKAPPQLETAR
Sequences:
>Translated_816_residues MFDLREYRRRAAQLPDFLPWAALVEPGVVLNKDGGFQRTARFRGPDLDSATASELVSAAGRLNNALRRLGSGWAVFVEAQ RNAADVYPLSDFPDPVSALVDEERRAQFEEHGAHFDSAYFLTFVFLPPAENTARAESWLYEGRERRGVDWREALAGFVDR TDRVLALLEGFVPEAEWLTDAETLTYLHSTVSTHRHRVGVPDTPMHLDVLLADQPLTGGLEPRLGTAHLRVLTISGFPAA TWPGLLDDLNRLAFPYRWSTRAICLDKVDAAKLLGRIRRQWFAKRKSIMAILKEVLTNEAAALVDTDAQNKALDADEALQ DLGADVVGHAFVTATVCVWDEDAGRADAKLRLVEKAIQARDFTCMVESINAVEAWLGSLPGHAYANVRQPPISTLNLAHM IPLSAVWAGPQRNAHLNGPPLFFAQTEGSTPFRFSTHVGDVGHSMVVGPTGAGKSVLLALMALQFRRYPAGQVFAFDFGG SIRAAALAMGGDFHDLGGALADDETPPVALQPLGRIQDLAERAWASEWLAGVLAREGVAVTPEVKEHLWTALGSLASAPE AERTLTGLSVLLQSNALKRALQPYTVAGPWGRLLDAESERLGSASVQAFETEGLVGSAAAPAVLSYLFHRIQSRLDGRPT LVVVDEGWLALDDATFGAQLREWLKTLRKKNASVVFATQSLADIETSAIAASIIESCPTRIFLPNDRAQEPQIAAAYARF GLNERQVEILGRAIPKRDYYCQSRRGNRLFELGLGPVALAFCAASAKADQLVIAELLEHHGPGGFAAAWLEHRGLPWAAD LIRLQAKAPPQLETAR >Mature_816_residues MFDLREYRRRAAQLPDFLPWAALVEPGVVLNKDGGFQRTARFRGPDLDSATASELVSAAGRLNNALRRLGSGWAVFVEAQ RNAADVYPLSDFPDPVSALVDEERRAQFEEHGAHFDSAYFLTFVFLPPAENTARAESWLYEGRERRGVDWREALAGFVDR TDRVLALLEGFVPEAEWLTDAETLTYLHSTVSTHRHRVGVPDTPMHLDVLLADQPLTGGLEPRLGTAHLRVLTISGFPAA TWPGLLDDLNRLAFPYRWSTRAICLDKVDAAKLLGRIRRQWFAKRKSIMAILKEVLTNEAAALVDTDAQNKALDADEALQ DLGADVVGHAFVTATVCVWDEDAGRADAKLRLVEKAIQARDFTCMVESINAVEAWLGSLPGHAYANVRQPPISTLNLAHM IPLSAVWAGPQRNAHLNGPPLFFAQTEGSTPFRFSTHVGDVGHSMVVGPTGAGKSVLLALMALQFRRYPAGQVFAFDFGG SIRAAALAMGGDFHDLGGALADDETPPVALQPLGRIQDLAERAWASEWLAGVLAREGVAVTPEVKEHLWTALGSLASAPE AERTLTGLSVLLQSNALKRALQPYTVAGPWGRLLDAESERLGSASVQAFETEGLVGSAAAPAVLSYLFHRIQSRLDGRPT LVVVDEGWLALDDATFGAQLREWLKTLRKKNASVVFATQSLADIETSAIAASIIESCPTRIFLPNDRAQEPQIAAAYARF GLNERQVEILGRAIPKRDYYCQSRRGNRLFELGLGPVALAFCAASAKADQLVIAELLEHHGPGGFAAAWLEHRGLPWAAD LIRLQAKAPPQLETAR
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 88936; Mature: 88936
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDLREYRRRAAQLPDFLPWAALVEPGVVLNKDGGFQRTARFRGPDLDSATASELVSAAG CCCHHHHHHHHHCCCCCCCHHHHHCCCEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHH RLNNALRRLGSGWAVFVEAQRNAADVYPLSDFPDPVSALVDEERRAQFEEHGAHFDSAYF HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHCCCCCCCEEE LTFVFLPPAENTARAESWLYEGRERRGVDWREALAGFVDRTDRVLALLEGFVPEAEWLTD EEEEEECCCCCHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC AETLTYLHSTVSTHRHRVGVPDTPMHLDVLLADQPLTGGLEPRLGTAHLRVLTISGFPAA HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCC TWPGLLDDLNRLAFPYRWSTRAICLDKVDAAKLLGRIRRQWFAKRKSIMAILKEVLTNEA CCCHHHHHHHHHCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AALVDTDAQNKALDADEALQDLGADVVGHAFVTATVCVWDEDAGRADAKLRLVEKAIQAR CEEEECCCCCCCCCHHHHHHHHCHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHC DFTCMVESINAVEAWLGSLPGHAYANVRQPPISTLNLAHMIPLSAVWAGPQRNAHLNGPP CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCE LFFAQTEGSTPFRFSTHVGDVGHSMVVGPTGAGKSVLLALMALQFRRYPAGQVFAFDFGG EEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC SIRAAALAMGGDFHDLGGALADDETPPVALQPLGRIQDLAERAWASEWLAGVLAREGVAV CHHHHHHHHCCCHHHHCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE TPEVKEHLWTALGSLASAPEAERTLTGLSVLLQSNALKRALQPYTVAGPWGRLLDAESER CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHCCHHHH LGSASVQAFETEGLVGSAAAPAVLSYLFHRIQSRLDGRPTLVVVDEGWLALDDATFGAQL CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHHHH REWLKTLRKKNASVVFATQSLADIETSAIAASIIESCPTRIFLPNDRAQEPQIAAAYARF HHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHH GLNERQVEILGRAIPKRDYYCQSRRGNRLFELGLGPVALAFCAASAKADQLVIAELLEHH CCCHHHHHHHHHHCCCCCCCHHCCCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHC GPGGFAAAWLEHRGLPWAADLIRLQAKAPPQLETAR CCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MFDLREYRRRAAQLPDFLPWAALVEPGVVLNKDGGFQRTARFRGPDLDSATASELVSAAG CCCHHHHHHHHHCCCCCCCHHHHHCCCEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHH RLNNALRRLGSGWAVFVEAQRNAADVYPLSDFPDPVSALVDEERRAQFEEHGAHFDSAYF HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHCCCCCCCEEE LTFVFLPPAENTARAESWLYEGRERRGVDWREALAGFVDRTDRVLALLEGFVPEAEWLTD EEEEEECCCCCHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC AETLTYLHSTVSTHRHRVGVPDTPMHLDVLLADQPLTGGLEPRLGTAHLRVLTISGFPAA HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCC TWPGLLDDLNRLAFPYRWSTRAICLDKVDAAKLLGRIRRQWFAKRKSIMAILKEVLTNEA CCCHHHHHHHHHCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AALVDTDAQNKALDADEALQDLGADVVGHAFVTATVCVWDEDAGRADAKLRLVEKAIQAR CEEEECCCCCCCCCHHHHHHHHCHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHC DFTCMVESINAVEAWLGSLPGHAYANVRQPPISTLNLAHMIPLSAVWAGPQRNAHLNGPP CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCE LFFAQTEGSTPFRFSTHVGDVGHSMVVGPTGAGKSVLLALMALQFRRYPAGQVFAFDFGG EEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC SIRAAALAMGGDFHDLGGALADDETPPVALQPLGRIQDLAERAWASEWLAGVLAREGVAV CHHHHHHHHCCCHHHHCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE TPEVKEHLWTALGSLASAPEAERTLTGLSVLLQSNALKRALQPYTVAGPWGRLLDAESER CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHCCHHHH LGSASVQAFETEGLVGSAAAPAVLSYLFHRIQSRLDGRPTLVVVDEGWLALDDATFGAQL CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHHHH REWLKTLRKKNASVVFATQSLADIETSAIAASIIESCPTRIFLPNDRAQEPQIAAAYARF HHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHH GLNERQVEILGRAIPKRDYYCQSRRGNRLFELGLGPVALAFCAASAKADQLVIAELLEHH CCCHHHHHHHHHHCCCCCCCHHCCCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHC GPGGFAAAWLEHRGLPWAADLIRLQAKAPPQLETAR CCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]