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The map label for this gene is traF

Identifier: 197104969

GI number: 197104969

Start: 1709481

End: 1710002

Strand: Direct

Name: traF

Synonym: PHZ_c1506

Alternate gene names: NA

Gene position: 1709481-1710002 (Clockwise)

Preceding gene: 197104968

Following gene: 197104970

Centisome position: 42.78

GC content: 74.33

Gene sequence:

>522_bases
ATGGACCGCCGCTCCACCCTCGCGTGGGCGCTGCTCGGGGCGCTCGCCCTTGGCGTCCCCGTGGCGGCCTCGCTCCCGTC
GCAGCTGGTTTGGAACGCCACGGCCAGCGCGCCGGAAGGGCTCTATCGCCTGCACGCCGATCGTCCGCCCGCGGTTGGCG
ACTGGGCGGCCGTCCGGGCGCCTCAACCGCTCGCCGGATGGCTCGAGCGCCGCGGCTACCTTCCGGACGGCGTGCTGCTG
ATCAAGAAGGTCGCGGCGCGCGCACCGAGCCGGGTTTGCCGCCAGGAGGGCGCGATCACGGTGGACGGACGGCTCGTGGC
CCGCGCCGAGCCCCGCGACCGGGCAGGGCGGCCGCTGCCGGTCTGGCGCGGCTGCTTCGTCCTCGCCGAGCACGACCTCT
TCGTCCTCAACCCCGCCGCCGGTTCGCTTGACAGCCGCTACTTCGGCGCCCTGTCGGACGCCGCCGTGGTCGGTCGGGCC
GAGCCTCTTTGGCTGATCCAGGATCCCCGACATGGGCGATGA

Upstream 100 bases:

>100_bases
GGCGGCAGGTGCACAACCGGCTGAAGGCGCGCGCGTCGCCTGAGCCCTACACGCTCGTGCGGCACCGGGCCTGGCGTCTC
CGCAGCGCGGTGGGCGCCTG

Downstream 100 bases:

>100_bases
ACGCCAAGAAAGCCCTGCTCCTTTGTTCGATCGAACAAACGACGGCCGCTCCTTCGTCCCGACCAGGTTCCGCAGAGCCG
CCGCGCGGAGCGGCGGTCCA

Product: Type IV secretory pathway, protease TraF

Products: NA

Alternate protein names: Conjugal Transfer Protein TraF; TraF Peptidase; Conjugal Transfer TRAF Transmembrane Protein; Peptidase; Type IV Secretory Pathway Protease TraF-Like Protein; Conjugative Transfer Signal Peptidase TraF; Plasmid Transfer Protein TraF; Type IV Secretory Pathway Protease TraF; Peptidase S; Raf Peptidase. Serine Peptidase. Merops Family; Conjugal Transfer Protein Traf; Conjugal Transfer TraF Transmembrane Protein; Plasmid Transfer Protein Traf; Traf Peptidase Serine Peptidase Merops Family; Transmembrane Anchor Conjugal Transfer Protein; RaF Peptidase. Serine Peptidase. MEROPS Family; TraF Peptidase Serine Peptidase MEROPS Family

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MDRRSTLAWALLGALALGVPVAASLPSQLVWNATASAPEGLYRLHADRPPAVGDWAAVRAPQPLAGWLERRGYLPDGVLL
IKKVAARAPSRVCRQEGAITVDGRLVARAEPRDRAGRPLPVWRGCFVLAEHDLFVLNPAAGSLDSRYFGALSDAAVVGRA
EPLWLIQDPRHGR

Sequences:

>Translated_173_residues
MDRRSTLAWALLGALALGVPVAASLPSQLVWNATASAPEGLYRLHADRPPAVGDWAAVRAPQPLAGWLERRGYLPDGVLL
IKKVAARAPSRVCRQEGAITVDGRLVARAEPRDRAGRPLPVWRGCFVLAEHDLFVLNPAAGSLDSRYFGALSDAAVVGRA
EPLWLIQDPRHGR
>Mature_173_residues
MDRRSTLAWALLGALALGVPVAASLPSQLVWNATASAPEGLYRLHADRPPAVGDWAAVRAPQPLAGWLERRGYLPDGVLL
IKKVAARAPSRVCRQEGAITVDGRLVARAEPRDRAGRPLPVWRGCFVLAEHDLFVLNPAAGSLDSRYFGALSDAAVVGRA
EPLWLIQDPRHGR

Specific function: Unknown

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18665; Mature: 18665

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRSTLAWALLGALALGVPVAASLPSQLVWNATASAPEGLYRLHADRPPAVGDWAAVRA
CCCHHHHHHHHHHHHHHCCCCHHCCCHHHEECCCCCCCCCCEEECCCCCCCCCCCHHCCC
PQPLAGWLERRGYLPDGVLLIKKVAARAPSRVCRQEGAITVDGRLVARAEPRDRAGRPLP
CCHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHCCCEEECCEEEEECCCHHCCCCCCC
VWRGCFVLAEHDLFVLNPAAGSLDSRYFGALSDAAVVGRAEPLWLIQDPRHGR
HHHCEEEEEECCEEEECCCCCCCCCHHHCCCCCHHEECCCCCEEEECCCCCCC
>Mature Secondary Structure
MDRRSTLAWALLGALALGVPVAASLPSQLVWNATASAPEGLYRLHADRPPAVGDWAAVRA
CCCHHHHHHHHHHHHHHCCCCHHCCCHHHEECCCCCCCCCCEEECCCCCCCCCCCHHCCC
PQPLAGWLERRGYLPDGVLLIKKVAARAPSRVCRQEGAITVDGRLVARAEPRDRAGRPLP
CCHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHCCCEEECCEEEEECCCHHCCCCCCC
VWRGCFVLAEHDLFVLNPAAGSLDSRYFGALSDAAVVGRAEPLWLIQDPRHGR
HHHCEEEEEECCEEEECCCCCCCCCHHHCCCCCHHEECCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA