| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is btuB [H]
Identifier: 197104947
GI number: 197104947
Start: 1683439
End: 1686120
Strand: Direct
Name: btuB [H]
Synonym: PHZ_c1482
Alternate gene names: 197104947
Gene position: 1683439-1686120 (Clockwise)
Preceding gene: 197104944
Following gene: 197104948
Centisome position: 42.13
GC content: 66.96
Gene sequence:
>2682_bases ATGAACCGGATTTCGAAAGGGTTGCTGTTCGCGAGCGCCTGCGCCTCGCTCGGCCTGGTTGGGACCGCAGCCGCGGCGCA ACAGACCGGGGGCGCTGCTGTGGACGAGGTGGTCGTCACGGGGAGCCGCATCAAGCGGGCCGATATCACCGGCGTCGGCC CGGCGACCGTCGTCACCGAGGAGGCGATCGCCCGGACCGGCGTAATGAATGTCGAGACGCTGCTTCAGCGTCTGCCGGCG TCGGCCGGCAACGCCGGCAACCAGACCAACGCCTACTGGACGGGCAACGGCTGGGGCACCGCCCAGGTGAACCTGCGCGG GCTCGGCATCAACCGGACGCTGGTCCTGCTGAACGGTCGGCGGGTGGTGTACGGCGGCACCGGCGCCAACAGCGCCGTCG ACCTCAACACCATCCCCACCGGCATGATCGCGCGCATGGACGTCCTGAAGGACGGCGCCTCGGCGATCTACGGCGCGGAC GCGGTCGCGGGTGTGGTCAACATCATCACCCGCACGGACTTCGAAGGCGTGCAGGTCACCGGCAAGTACGGGGTCACCGA CGAGGGCGACGGCAACGAGTATGCCGTCGATGTCTTGTGGGGCCTCCGCGGCGACCGTGGCGGCTTCACCGCCGGCGTCA GCTACCAGAAGATGGATCCGGTCAACATGGCCGACCGCGAGCCCTGCGGTCTCGGCGAGGTGGGCGGCCAACTCGTGTGC GTCGGCAGCGCCGCGACGATCGGCGGCCGTGCGGTCCTGCCCAACGGCCAGCAGATCAACTTCAACCAGACGCCCGGGGG CAACGGCAACTTCTTCGAGCCGTACAGCGCGGCGAAGCACAACTTCAACTCCAACCCGTTCCTTAACGCGGTGAGCGCGC TGGAGCGGGTTAGCGTCGGCGTGTTCGGCGACTACGACCTGACCGACAATATCGAGCTCTTCGGGGAGTTCCTGTTCACG CACCGCGAGACGGGGCAGATCGCCACGCCCGGCTCGCTCCGGAACCTGACCATCACCGCCAACAACTCGACGAACCCCAC CGGCCAGGAGCTCCTGCTCATCCAGCGGCGGCTGGCGGAGCCCGGCCCGCGCGAGTTCTTCCAGGAGACCGACACCTGGC GCGGCGTGGCCGGCCTGCGCGGCGACCTCGGCGAGAAGTGGTCCTGGGAAGTGGCCGGCAACTTCGGCCGCACGACGGGT ATCGATGGCTCCACCAACATCGCCAACCTGGAGCGGGTGCGGAACACCATCGCCGCCTGCGTGCCGGGATACACCGGCAC TGCCCCCTGCGCAGACTATCTCGGCTACGGCGACCTGACCCCGCAGGTGCTGGACTACATCCTGTTCACGATGCGCGACA CGGGCGGCAACGAGCAGGCCAGCGTCACCGCCGACATCACCGGGACGCTCTTCGATCTGCCGGCCGGCCCGCTGGGCGTG GCCGCGGGCGTTGTCTACCGGGAGGAAAAGGGCTGGCGCGACCCGGACGCCCTGACCGTCCTCGGCGTCGCCAACACCAA TCAGCAGGACCCGATCTCGGGTTCGGTGAACACCAAGGAGGCTTATGTCGAGCTTTCCGCCCCGCTCATCGCCGACATGC CCTTCGCCGAGCGCATCGAGCTGAACGGCGCCGTCCGCTACTCGGACTACAACCTGTTCGGCGACAACATCACCTACAAG CTCGGCCTCGACTGGACGGTGATGGAAGGCCTGCGCCTGCGAGCCACCTACGGCACCGGCTTCCGCATCCCGAGCGTCCC TGAACTGTTCGGCGGGGTGGCTGAGGGCAACCTGACCACGACGGACCCCTGCAGCCGTTACTCCACGAGCGGGAACGCCA CCCTGATCGCCAACTGCCAAGCCTCGGGCGTGCCGGCCGGCTACGTCCAGCTCGGCAACACGGTGCTGACCACGGTCGGC GGCAATCAGAACCTGCAACCCGAAGAGTCCGAGAACCTCACCCTCGGCGCAGTCTTCCAACCGGAATTCGTGCCCGGTCT GTCGGTCACCGTCGACTACTTCGACATCCAGATCAAAGACGCCATCCGCAACATCCCGGGCTCCACCAAGCTCGCGGTCT GCTACGCCAGCCCGAACCTCTCGCACCCGTTCTGCGGTCCGGAGCACTTCACGCGCAGTACGCGCACCGGCGAAGTGAAT TTCCTCTCTTCGCAGCCGACCAACGCCGGCAAGGAGACCATGAAGGGTGTGGACTTCGGCGTCCGCTACGCCTTCGACGT GGCGCACCTGCGGGCCGACCTCGACTGGAACACCACGTACCTGGCGAAGTACGAGGTGATCCCGTTCCAGGGCGCCGACC CGATCATCTTCGACGGCTACATCGGCGGCGGCAACGGCGGCTATCCGCACTGGCGCTCGAACGCCAGCCTGACGGTCTCC GACGTCAACTGGAACGCCACCTGGTCGGTGCAGTGGATCGGCAAGGCGAAGGACTTCAACGCCTCGCCCGGCGACATCGG CGACGAGACGCCGAACGTCTTCTACCACAACGTCCAGTTCGCCTACCGGCTGAGCGAAAAGGCCAATGTTGCGGTGGGCG TCGACAACGTGTTCGACCGGGACGCCCCGTTCATCCAGAGCTGGACCGACGCCAACACCGACACCATGACCTACGACCTG TTGGGTCGTAAGGGCTACGTCCGCCTGCAGTACACGTTCTAG
Upstream 100 bases:
>100_bases ACATGACTTGACAGTCCCCGACCGCCGACCGGACAAATTCGCCGTCGACGGAAGATCGCGACCTGAGCGCGGCCCGCGGC GCGGGAACAAGGGGGTAGTC
Downstream 100 bases:
>100_bases CGGACGTAGATCGGGACGCCGGGGAGGGGCCCCACCTCCCCGGCGTCCGTCTTTCCAGTCGAGAGTCACCATGCGGCTGC CCGCCCTCGCCCGAACGACA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 893; Mature: 893
Protein sequence:
>893_residues MNRISKGLLFASACASLGLVGTAAAAQQTGGAAVDEVVVTGSRIKRADITGVGPATVVTEEAIARTGVMNVETLLQRLPA SAGNAGNQTNAYWTGNGWGTAQVNLRGLGINRTLVLLNGRRVVYGGTGANSAVDLNTIPTGMIARMDVLKDGASAIYGAD AVAGVVNIITRTDFEGVQVTGKYGVTDEGDGNEYAVDVLWGLRGDRGGFTAGVSYQKMDPVNMADREPCGLGEVGGQLVC VGSAATIGGRAVLPNGQQINFNQTPGGNGNFFEPYSAAKHNFNSNPFLNAVSALERVSVGVFGDYDLTDNIELFGEFLFT HRETGQIATPGSLRNLTITANNSTNPTGQELLLIQRRLAEPGPREFFQETDTWRGVAGLRGDLGEKWSWEVAGNFGRTTG IDGSTNIANLERVRNTIAACVPGYTGTAPCADYLGYGDLTPQVLDYILFTMRDTGGNEQASVTADITGTLFDLPAGPLGV AAGVVYREEKGWRDPDALTVLGVANTNQQDPISGSVNTKEAYVELSAPLIADMPFAERIELNGAVRYSDYNLFGDNITYK LGLDWTVMEGLRLRATYGTGFRIPSVPELFGGVAEGNLTTTDPCSRYSTSGNATLIANCQASGVPAGYVQLGNTVLTTVG GNQNLQPEESENLTLGAVFQPEFVPGLSVTVDYFDIQIKDAIRNIPGSTKLAVCYASPNLSHPFCGPEHFTRSTRTGEVN FLSSQPTNAGKETMKGVDFGVRYAFDVAHLRADLDWNTTYLAKYEVIPFQGADPIIFDGYIGGGNGGYPHWRSNASLTVS DVNWNATWSVQWIGKAKDFNASPGDIGDETPNVFYHNVQFAYRLSEKANVAVGVDNVFDRDAPFIQSWTDANTDTMTYDL LGRKGYVRLQYTF
Sequences:
>Translated_893_residues MNRISKGLLFASACASLGLVGTAAAAQQTGGAAVDEVVVTGSRIKRADITGVGPATVVTEEAIARTGVMNVETLLQRLPA SAGNAGNQTNAYWTGNGWGTAQVNLRGLGINRTLVLLNGRRVVYGGTGANSAVDLNTIPTGMIARMDVLKDGASAIYGAD AVAGVVNIITRTDFEGVQVTGKYGVTDEGDGNEYAVDVLWGLRGDRGGFTAGVSYQKMDPVNMADREPCGLGEVGGQLVC VGSAATIGGRAVLPNGQQINFNQTPGGNGNFFEPYSAAKHNFNSNPFLNAVSALERVSVGVFGDYDLTDNIELFGEFLFT HRETGQIATPGSLRNLTITANNSTNPTGQELLLIQRRLAEPGPREFFQETDTWRGVAGLRGDLGEKWSWEVAGNFGRTTG IDGSTNIANLERVRNTIAACVPGYTGTAPCADYLGYGDLTPQVLDYILFTMRDTGGNEQASVTADITGTLFDLPAGPLGV AAGVVYREEKGWRDPDALTVLGVANTNQQDPISGSVNTKEAYVELSAPLIADMPFAERIELNGAVRYSDYNLFGDNITYK LGLDWTVMEGLRLRATYGTGFRIPSVPELFGGVAEGNLTTTDPCSRYSTSGNATLIANCQASGVPAGYVQLGNTVLTTVG GNQNLQPEESENLTLGAVFQPEFVPGLSVTVDYFDIQIKDAIRNIPGSTKLAVCYASPNLSHPFCGPEHFTRSTRTGEVN FLSSQPTNAGKETMKGVDFGVRYAFDVAHLRADLDWNTTYLAKYEVIPFQGADPIIFDGYIGGGNGGYPHWRSNASLTVS DVNWNATWSVQWIGKAKDFNASPGDIGDETPNVFYHNVQFAYRLSEKANVAVGVDNVFDRDAPFIQSWTDANTDTMTYDL LGRKGYVRLQYTF >Mature_893_residues MNRISKGLLFASACASLGLVGTAAAAQQTGGAAVDEVVVTGSRIKRADITGVGPATVVTEEAIARTGVMNVETLLQRLPA SAGNAGNQTNAYWTGNGWGTAQVNLRGLGINRTLVLLNGRRVVYGGTGANSAVDLNTIPTGMIARMDVLKDGASAIYGAD AVAGVVNIITRTDFEGVQVTGKYGVTDEGDGNEYAVDVLWGLRGDRGGFTAGVSYQKMDPVNMADREPCGLGEVGGQLVC VGSAATIGGRAVLPNGQQINFNQTPGGNGNFFEPYSAAKHNFNSNPFLNAVSALERVSVGVFGDYDLTDNIELFGEFLFT HRETGQIATPGSLRNLTITANNSTNPTGQELLLIQRRLAEPGPREFFQETDTWRGVAGLRGDLGEKWSWEVAGNFGRTTG IDGSTNIANLERVRNTIAACVPGYTGTAPCADYLGYGDLTPQVLDYILFTMRDTGGNEQASVTADITGTLFDLPAGPLGV AAGVVYREEKGWRDPDALTVLGVANTNQQDPISGSVNTKEAYVELSAPLIADMPFAERIELNGAVRYSDYNLFGDNITYK LGLDWTVMEGLRLRATYGTGFRIPSVPELFGGVAEGNLTTTDPCSRYSTSGNATLIANCQASGVPAGYVQLGNTVLTTVG GNQNLQPEESENLTLGAVFQPEFVPGLSVTVDYFDIQIKDAIRNIPGSTKLAVCYASPNLSHPFCGPEHFTRSTRTGEVN FLSSQPTNAGKETMKGVDFGVRYAFDVAHLRADLDWNTTYLAKYEVIPFQGADPIIFDGYIGGGNGGYPHWRSNASLTVS DVNWNATWSVQWIGKAKDFNASPGDIGDETPNVFYHNVQFAYRLSEKANVAVGVDNVFDRDAPFIQSWTDANTDTMTYDL LGRKGYVRLQYTF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=177, Percent_Identity=32.2033898305085, Blast_Score=80, Evalue=7e-16, Organism=Escherichia coli, GI1788478, Length=144, Percent_Identity=32.6388888888889, Blast_Score=71, Evalue=3e-13,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 95400; Mature: 95400
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRISKGLLFASACASLGLVGTAAAAQQTGGAAVDEVVVTGSRIKRADITGVGPATVVTE CCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHEEEECCCEEECCCCCCCCHHHHHH EAIARTGVMNVETLLQRLPASAGNAGNQTNAYWTGNGWGTAQVNLRGLGINRTLVLLNGR HHHHHCCCCCHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEEEEEECCCEEEEEEECC RVVYGGTGANSAVDLNTIPTGMIARMDVLKDGASAIYGADAVAGVVNIITRTDFEGVQVT EEEECCCCCCCEEEECCCCCCHHHHHHHHHCCCHHEECHHHHHHHHHHHHCCCCCCEEEE GKYGVTDEGDGNEYAVDVLWGLRGDRGGFTAGVSYQKMDPVNMADREPCGLGEVGGQLVC ECCCCCCCCCCCEEEEEEEEECCCCCCCEEECCCEECCCCCCCCCCCCCCCHHCCCEEEE VGSAATIGGRAVLPNGQQINFNQTPGGNGNFFEPYSAAKHNFNSNPFLNAVSALERVSVG EECCCCCCCEEECCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHEEE VFGDYDLTDNIELFGEFLFTHRETGQIATPGSLRNLTITANNSTNPTGQELLLIQRRLAE EEECCCCCCCHHHHHHHHHHCCCCCCEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHCC PGPREFFQETDTWRGVAGLRGDLGEKWSWEVAGNFGRTTGIDGSTNIANLERVRNTIAAC CCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH VPGYTGTAPCADYLGYGDLTPQVLDYILFTMRDTGGNEQASVTADITGTLFDLPAGPLGV CCCCCCCCCHHHHCCCCCCCHHHHHHHHHEEECCCCCCCEEEEEEECEEEEECCCCCHHH AAGVVYREEKGWRDPDALTVLGVANTNQQDPISGSVNTKEAYVELSAPLIADMPFAERIE HEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEECCCCHHEEE LNGAVRYSDYNLFGDNITYKLGLDWTVMEGLRLRATYGTGFRIPSVPELFGGVAEGNLTT ECCEEEEECEEEECCCEEEEEECCEEEECCEEEEEEECCCCCCCCCHHHHCCCCCCCCCC TDPCSRYSTSGNATLIANCQASGVPAGYVQLGNTVLTTVGGNQNLQPEESENLTLGAVFQ CCCHHHCCCCCCEEEEEECCCCCCCCHHEEECCEEEEEECCCCCCCCCCCCCEEEEEEEC PEFVPGLSVTVDYFDIQIKDAIRNIPGSTKLAVCYASPNLSHPFCGPEHFTRSTRTGEVN CCCCCCCEEEEEEEEEEEEHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCEEE FLSSQPTNAGKETMKGVDFGVRYAFDVAHLRADLDWNTTYLAKYEVIPFQGADPIIFDGY EECCCCCCCCHHHHHCCCCCEEEEEEEEEHEECCCCCEEEEEEEEEEECCCCCCEEEEEE IGGGNGGYPHWRSNASLTVSDVNWNATWSVQWIGKAKDFNASPGDIGDETPNVFYHNVQF ECCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEE AYRLSEKANVAVGVDNVFDRDAPFIQSWTDANTDTMTYDLLGRKGYVRLQYTF EEEECCCCEEEEECCHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEC >Mature Secondary Structure MNRISKGLLFASACASLGLVGTAAAAQQTGGAAVDEVVVTGSRIKRADITGVGPATVVTE CCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHEEEECCCEEECCCCCCCCHHHHHH EAIARTGVMNVETLLQRLPASAGNAGNQTNAYWTGNGWGTAQVNLRGLGINRTLVLLNGR HHHHHCCCCCHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEEEEEECCCEEEEEEECC RVVYGGTGANSAVDLNTIPTGMIARMDVLKDGASAIYGADAVAGVVNIITRTDFEGVQVT EEEECCCCCCCEEEECCCCCCHHHHHHHHHCCCHHEECHHHHHHHHHHHHCCCCCCEEEE GKYGVTDEGDGNEYAVDVLWGLRGDRGGFTAGVSYQKMDPVNMADREPCGLGEVGGQLVC ECCCCCCCCCCCEEEEEEEEECCCCCCCEEECCCEECCCCCCCCCCCCCCCHHCCCEEEE VGSAATIGGRAVLPNGQQINFNQTPGGNGNFFEPYSAAKHNFNSNPFLNAVSALERVSVG EECCCCCCCEEECCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHEEE VFGDYDLTDNIELFGEFLFTHRETGQIATPGSLRNLTITANNSTNPTGQELLLIQRRLAE EEECCCCCCCHHHHHHHHHHCCCCCCEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHCC PGPREFFQETDTWRGVAGLRGDLGEKWSWEVAGNFGRTTGIDGSTNIANLERVRNTIAAC CCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH VPGYTGTAPCADYLGYGDLTPQVLDYILFTMRDTGGNEQASVTADITGTLFDLPAGPLGV CCCCCCCCCHHHHCCCCCCCHHHHHHHHHEEECCCCCCCEEEEEEECEEEEECCCCCHHH AAGVVYREEKGWRDPDALTVLGVANTNQQDPISGSVNTKEAYVELSAPLIADMPFAERIE HEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEECCCCHHEEE LNGAVRYSDYNLFGDNITYKLGLDWTVMEGLRLRATYGTGFRIPSVPELFGGVAEGNLTT ECCEEEEECEEEECCCEEEEEECCEEEECCEEEEEEECCCCCCCCCHHHHCCCCCCCCCC TDPCSRYSTSGNATLIANCQASGVPAGYVQLGNTVLTTVGGNQNLQPEESENLTLGAVFQ CCCHHHCCCCCCEEEEEECCCCCCCCHHEEECCEEEEEECCCCCCCCCCCCCEEEEEEEC PEFVPGLSVTVDYFDIQIKDAIRNIPGSTKLAVCYASPNLSHPFCGPEHFTRSTRTGEVN CCCCCCCEEEEEEEEEEEEHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCEEE FLSSQPTNAGKETMKGVDFGVRYAFDVAHLRADLDWNTTYLAKYEVIPFQGADPIIFDGY EECCCCCCCCHHHHHCCCCCEEEEEEEEEHEECCCCCEEEEEEEEEEECCCCCCEEEEEE IGGGNGGYPHWRSNASLTVSDVNWNATWSVQWIGKAKDFNASPGDIGDETPNVFYHNVQF ECCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEE AYRLSEKANVAVGVDNVFDRDAPFIQSWTDANTDTMTYDLLGRKGYVRLQYTF EEEECCCCEEEEECCHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11598060 [H]