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The map label for this gene is nccC [H]

Identifier: 197104896

GI number: 197104896

Start: 1621740

End: 1622993

Strand: Direct

Name: nccC [H]

Synonym: PHZ_c1431

Alternate gene names: 197104896

Gene position: 1621740-1622993 (Clockwise)

Preceding gene: 197104895

Following gene: 197104897

Centisome position: 40.58

GC content: 74.56

Gene sequence:

>1254_bases
ATGAAACCCCACTTCCGCAGCTCGCCTTTGGCGGGACTGCTCTTGCTGGCCAGCCTCGGCGCAGCCGGCGCCGCCATGGC
CGAACCTGCGCCGCCGTTCGCCGCCCTGCTTGCGCAGGCGCAGGCATCCGCCCCCCGGCTCGCCGAAGCGCGCGCCAACA
TCGCGCGCGCCGAAGGGCTCGCGCGGCAAGCCGGCGTCCTGCCCAATCCGACCCTTGAGTTCGAGGTCGAGAACTTCTCC
GGCTCCGGACCCTTCCGCGGAACCAGCCTGTCAGAAACGACGGCGCGGGTCGGCCAGACCTTGGAGCTCGGCGGCAAGCG
CTCGGCTCGCGTGGCGGCCGGTCGCGCCGAGATCGACGCCGCGCGGGCCCAGGCCCGGCGTGTCGAAGCGGAGTACGCGT
TCGACCTCGCCGCGGCCTATGCGGAAGCCGAGGCTGCGGAACGACGCCTTCAGCTGGCGCGGGAGAGCCTGACCCTCGCG
GAGGAGGACGCCCGCATCGCTTCGGCGCTTGTCGACGCCGGGCGCGAAGCTGAGCTTCGCCGCCTCCAGGCGCAGGCGGC
TGTCGAGGCAGCTCGGGCGGCTGTTCAGGCAGCCCAAGCGGCGCGCGAGACGGCCTTCGGCGCCCTTACGACGCTGGCCG
GCGCGCCAGCTCCTATCACCTCCATCCCGGCGAGCCTGCTGGAGTCCGCCGCCCCGCTCTTTCCGGGGGCGGCACCGGCG
GCATCGGCGACCACCTCGTACCTGGCGGCCCAGGCGGAGCGTGAGGCGGCCGCCCGCCGCCTGCGCGTCGAGCGGCGGCG
GGCCGTGCCGGACGTGACCGTCTCGATCGGGGTTCGTCGCTTCGAGGCGGACGACGCGGCGGCGCTGGTCGCGGGCGTGT
CCGTCCCCTTGCCCTTGTTCGATCAGAACCGCGGCAACATCGCCGCCGCGCGCGCCGAGGCCGCGGCAGCGGAGGCGCGG
CTCAACGCGGCGCGCCTGGAAGCCGAGTCGGCGGTGCGCACGAGCGCGGCGCGCAGCGCGGCGGCGGAGAGCCGCCTCAG
CGCCGCGCGCCAGGGTGAGAGCACGGCCCATGAAGCCTACCGTCTCGCCCGCATCGGCTACGAAGCCGGTCGCCTGCCGC
TGGCCGAACTCGTCGCCGCTCGCCGCGCGCTTGCAGAGGCGCGCGAACAGACCATCGCAGCCGCCGTCGAGCGGATCAGC
GCCCAAGCCGCCATCGCGCGGCTGAGCGTCGTCGCCACCCCTGGAGAACAATGA

Upstream 100 bases:

>100_bases
GGTACCGACCTCCGATCCCAAGTTCGGGCTGATCCGACCTCCCAGAGCCTGACGGTTCGCGCGTTCGCGCGCCCCATCCG
TCACGTTCAAGAGGGACACC

Downstream 100 bases:

>100_bases
TGAAGACCGACGATAAGCGTCTCTACGGCGCCGTCGCGGCGGCCGTCGTGCTGGCCGGTGTCGGCGGCTTCGCGCTGTCC
ACCGTGATCAACCGCCCTGA

Product: metal ion efflux outer membrane factor protein family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MKPHFRSSPLAGLLLLASLGAAGAAMAEPAPPFAALLAQAQASAPRLAEARANIARAEGLARQAGVLPNPTLEFEVENFS
GSGPFRGTSLSETTARVGQTLELGGKRSARVAAGRAEIDAARAQARRVEAEYAFDLAAAYAEAEAAERRLQLARESLTLA
EEDARIASALVDAGREAELRRLQAQAAVEAARAAVQAAQAARETAFGALTTLAGAPAPITSIPASLLESAAPLFPGAAPA
ASATTSYLAAQAEREAAARRLRVERRRAVPDVTVSIGVRRFEADDAAALVAGVSVPLPLFDQNRGNIAAARAEAAAAEAR
LNAARLEAESAVRTSAARSAAAESRLSAARQGESTAHEAYRLARIGYEAGRLPLAELVAARRALAEAREQTIAAAVERIS
AQAAIARLSVVATPGEQ

Sequences:

>Translated_417_residues
MKPHFRSSPLAGLLLLASLGAAGAAMAEPAPPFAALLAQAQASAPRLAEARANIARAEGLARQAGVLPNPTLEFEVENFS
GSGPFRGTSLSETTARVGQTLELGGKRSARVAAGRAEIDAARAQARRVEAEYAFDLAAAYAEAEAAERRLQLARESLTLA
EEDARIASALVDAGREAELRRLQAQAAVEAARAAVQAAQAARETAFGALTTLAGAPAPITSIPASLLESAAPLFPGAAPA
ASATTSYLAAQAEREAAARRLRVERRRAVPDVTVSIGVRRFEADDAAALVAGVSVPLPLFDQNRGNIAAARAEAAAAEAR
LNAARLEAESAVRTSAARSAAAESRLSAARQGESTAHEAYRLARIGYEAGRLPLAELVAARRALAEAREQTIAAAVERIS
AQAAIARLSVVATPGEQ
>Mature_417_residues
MKPHFRSSPLAGLLLLASLGAAGAAMAEPAPPFAALLAQAQASAPRLAEARANIARAEGLARQAGVLPNPTLEFEVENFS
GSGPFRGTSLSETTARVGQTLELGGKRSARVAAGRAEIDAARAQARRVEAEYAFDLAAAYAEAEAAERRLQLARESLTLA
EEDARIASALVDAGREAELRRLQAQAAVEAARAAVQAAQAARETAFGALTTLAGAPAPITSIPASLLESAAPLFPGAAPA
ASATTSYLAAQAEREAAARRLRVERRRAVPDVTVSIGVRRFEADDAAALVAGVSVPLPLFDQNRGNIAAARAEAAAAEAR
LNAARLEAESAVRTSAARSAAAESRLSAARQGESTAHEAYRLARIGYEAGRLPLAELVAARRALAEAREQTIAAAVERIS
AQAAIARLSVVATPGEQ

Specific function: Component of the NCC cation-efflux system that confers resistance to nickel, cobalt and cadmium [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 42977; Mature: 42977

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPHFRSSPLAGLLLLASLGAAGAAMAEPAPPFAALLAQAQASAPRLAEARANIARAEGL
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ARQAGVLPNPTLEFEVENFSGSGPFRGTSLSETTARVGQTLELGGKRSARVAAGRAEIDA
HHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCHHHCCCCCCHHHHCCHHHHHH
ARAQARRVEAEYAFDLAAAYAEAEAAERRLQLARESLTLAEEDARIASALVDAGREAELR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RLQAQAAVEAARAAVQAAQAARETAFGALTTLAGAPAPITSIPASLLESAAPLFPGAAPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC
ASATTSYLAAQAEREAAARRLRVERRRAVPDVTVSIGVRRFEADDAAALVAGVSVPLPLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHEEECCCCHHHHHHHCCCCCCCC
DQNRGNIAAARAEAAAAEARLNAARLEAESAVRTSAARSAAAESRLSAARQGESTAHEAY
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RLARIGYEAGRLPLAELVAARRALAEAREQTIAAAVERISAQAAIARLSVVATPGEQ
HHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCC
>Mature Secondary Structure
MKPHFRSSPLAGLLLLASLGAAGAAMAEPAPPFAALLAQAQASAPRLAEARANIARAEGL
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ARQAGVLPNPTLEFEVENFSGSGPFRGTSLSETTARVGQTLELGGKRSARVAAGRAEIDA
HHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCHHHCCCCCCHHHHCCHHHHHH
ARAQARRVEAEYAFDLAAAYAEAEAAERRLQLARESLTLAEEDARIASALVDAGREAELR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RLQAQAAVEAARAAVQAAQAARETAFGALTTLAGAPAPITSIPASLLESAAPLFPGAAPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC
ASATTSYLAAQAEREAAARRLRVERRRAVPDVTVSIGVRRFEADDAAALVAGVSVPLPLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHEEECCCCHHHHHHHCCCCCCCC
DQNRGNIAAARAEAAAAEARLNAARLEAESAVRTSAARSAAAESRLSAARQGESTAHEAY
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RLARIGYEAGRLPLAELVAARRALAEAREQTIAAAVERISAQAAIARLSVVATPGEQ
HHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961470 [H]