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The map label for this gene is yqgF [C]

Identifier: 197104788

GI number: 197104788

Start: 1501385

End: 1501855

Strand: Reverse

Name: yqgF [C]

Synonym: PHZ_c1322

Alternate gene names: 197104788

Gene position: 1501855-1501385 (Counterclockwise)

Preceding gene: 197104791

Following gene: 197104787

Centisome position: 37.58

GC content: 69.64

Gene sequence:

>471_bases
ATGGCCGTCGTCGACCTTATCGATCTGCCCGCAATCGCGCCGCCGAACACGCCCCTGGTGGGCCTGGACCTGGGCGAGAA
GACCATCGGCGTCGCCGTCTCGGACGCCACGCGCATGGTGGCCAGCCCCCTGGGGTTGATCCGCAAGACCAAGTTCACCG
ACGACGCCAAGGCGCTCTTCAAGCTGATGGAGAGCCGGCGCGCCTCGGGGATCGTCATCGGCCTGCCGGTGAACATGGAC
GGGACCGAAGGGACGCGCTGCCAGTCCAACCGCGCCTTCGCCCGCAACCTGCTGCGGCTGCGGGAGGACCTGCCCATCGC
CTTCTGGGACGAGCGGATGTCGACCATGGCGGTCAACCGCATGCTCGTCGGCGAGGCCGACATGACCCGCGCCCGCCGGG
CCGACGTGGTGGACAAGATGGCCGCCGCCTGGATCCTCCAGGGCGCCCTGGACCGGCTGCGGAACCTCTAG

Upstream 100 bases:

>100_bases
CCTTGCGCACGGTCGCGGCGTCGATGGCCATGGGGCCCTCCTTGAACTCAGGCGCGTGGGTTAGCCGTGCAGACCCCCGC
TTTGCAAGCTATGGGTGGGC

Downstream 100 bases:

>100_bases
AGCCCCTTGGCTTGGCGACCGGCGCGGCCTATGACCGGCCCTCGATGAGCGGCGCGCCCACCGGTCTGAACGAGGTCCTG
CAGCGGACCTTTTCCTTCCC

Product: putative Holliday junction resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MAVVDLIDLPAIAPPNTPLVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDDAKALFKLMESRRASGIVIGLPVNMD
GTEGTRCQSNRAFARNLLRLREDLPIAFWDERMSTMAVNRMLVGEADMTRARRADVVDKMAAAWILQGALDRLRNL

Sequences:

>Translated_156_residues
MAVVDLIDLPAIAPPNTPLVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDDAKALFKLMESRRASGIVIGLPVNMD
GTEGTRCQSNRAFARNLLRLREDLPIAFWDERMSTMAVNRMLVGEADMTRARRADVVDKMAAAWILQGALDRLRNL
>Mature_155_residues
AVVDLIDLPAIAPPNTPLVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDDAKALFKLMESRRASGIVIGLPVNMDG
TEGTRCQSNRAFARNLLRLREDLPIAFWDERMSTMAVNRMLVGEADMTRARRADVVDKMAAAWILQGALDRLRNL

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=134, Percent_Identity=33.5820895522388, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_PHEZH (B4R966)

Other databases:

- EMBL:   CP000747
- RefSeq:   YP_002130165.1
- GeneID:   6790826
- GenomeReviews:   CP000747_GR
- KEGG:   pzu:PHZ_c1322
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   CLSK890978
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17092; Mature: 16961

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVVDLIDLPAIAPPNTPLVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDDAKALF
CCEECCCCCCCCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHH
KLMESRRASGIVIGLPVNMDGTEGTRCQSNRAFARNLLRLREDLPIAFWDERMSTMAVNR
HHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHH
MLVGEADMTRARRADVVDKMAAAWILQGALDRLRNL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVVDLIDLPAIAPPNTPLVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDDAKALF
CEECCCCCCCCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHH
KLMESRRASGIVIGLPVNMDGTEGTRCQSNRAFARNLLRLREDLPIAFWDERMSTMAVNR
HHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHH
MLVGEADMTRARRADVVDKMAAAWILQGALDRLRNL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA