| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is exsH [H]
Identifier: 197104757
GI number: 197104757
Start: 1468039
End: 1470360
Strand: Reverse
Name: exsH [H]
Synonym: PHZ_c1291
Alternate gene names: 197104757
Gene position: 1470360-1468039 (Counterclockwise)
Preceding gene: 197104758
Following gene: 197104754
Centisome position: 36.79
GC content: 70.03
Gene sequence:
>2322_bases ATGTCGCTTTTCAAGTACGACGGCTCGGCCGCCGCGCAGACGCTCGCGCCCGCCGCCGACTTCTTCGGCTCGAACGCCGC GGAAACCATCACCGGCACGGCTGGCCGGGATTCGCTGTGGCTGGGCCAGGGCGACAAGGGCGCCGGGGGCGCCGGCGACG ACACCTACTACCTGCAGGGACATAACACGACGATCGTCGAGGCCGCCGGCGGCGGCGTGGACAGGATCGTCGCCTGGTCG AGCGTCAAGCTGGCCGACCACCCGCACATCGAGAACCTGACCGTCGGCAACGACGGCATCTACGGCGCGGGCAACGCACT GGACAACATCATCGAGGGCCAGGGCGGCTCGCAGCAGATCTACGGCGGCTTCGGCCAGGACATCCTGATCGGCGGCGCCG GCGCCGACGTCTTCGTCGTGGTGAAGGGCGAAGGCAACGACGTCATCCAGGACTTCAACGTCGGCGAGGACAAGCTGCGC CTCAAGGCCGGCCTCTCCAGCTTCGAGCAGGTCAAGGCCCGCATGAGCCAGGACGGCGCGGACGTGAAGCTGGACCTGGG CGGCGGCGACGGCCTCGTGTTCCGGGGCGTCACGGTCGGACAGTTCACCGCCGCCAACTTCCAGCTCGAGCTGGACGCCT CCACCCTCGGCGCCAAGACCTTCGGCGACGAGTTCTCCGGCCCGCTGTCGCTCTGGGACGCCCAGAGCAACCCGACGGGC CTGTGGCGGCCGGACTTCGGCTACCAGGGGGAACAGGGCACGGGCTCGTACACCCTGATCAGCAACGACGAGAAGCAGAT CTACACCTCGCCGTACTTCCGCGGCCACGATGGCGATTTCGCCGAGAGCCCGTTCGTGAACAACGCCGACGGCACCCTGT CGATCTGGGCCAAGCCCAGCACCAACGGCGAGATCTTCGGCTACGGCTACACCTCGGGGATGATCACCACGAAGGAGACC TTCAGCCAGACCTACGGCTACTTCGAGATGCGGGCCGACATCCCCAGCGCGGCGGGCGCCTGGCCGGCCTTCTGGCTGAT CCCGGCCGACGGCTCCTGGCCGCCCGAGCTGGACGTGATGGAGACCCTGACGTCCGATCCCAACGGCCTGTGGACGACCC AGCACTCGAGCCTGGGCGGCCACTCCGCCGACGGCCAGCTCTCGTACGTTCCCGACACCGCCGACGGCTTCCACACCTAC GGGGCCATGTGGACCCCCACCGAGATCGTCTGGTACCTCGACAACGTCGAAGTGTTCCGCTCGGCGACCCCGGCCGACAT GAACAAGCCCATGTTCATGATCGCCAACCTGGCCCTCGGCGGCTGGGGCGGGGCCATCGACGGCGCGGCGCTGCCGGCCG AGTTCAAGATCGACTACATCCGCGCCTATGCGCTGGGCGACGGCACGGGCAGCCAACCCCCCGTCGAGCCGCCGGCTTCC ACGCCTCCGACGTCCACGCCGCCGACCGGCGAGATTCCGGTCCCGCCCGCCTCCGGCGACGGGGTCACCCTGACCTCGCA GGCGTTCGGCGACGTGATGACCGGCGGCGCCGGCGCCGACACGCTCACGGCCGGCAACGGCGGCGAGCTGATGACCGGCG GTGCGGGCGGCGACGTCTTCGTCTTCAAGACCTTCCCCTGGTCGCCGACCGAGATCCAGGACTTCCAGGTCGGCGTGGAC AAGCTGGACCTGTCGGCCCTGATGGACGGCTACAGCGGCGCCGATCCCGTCGCCGACGGCCGGCTGTGGCTGTTCGACGA CGGTGCAGGCGGGACCAAGGTCTGCGTCGATCCCGACGGCTTCGGCGGCGAGTGGCCCCTCTACGTCGCGCACCTCATGG GCGTGCCGGCCGAAGGGCTGACGGCGGACGCTCTGCTGGGCTCGGGCGAAGCGCCTGCGGCCGAGGCTCCCGCGCCGGCC GCGCCGGGCGTGGAGCTGGTCTCCGACCGGTGGGGCGCCGAGCTGACCGGCGGCGACGGGGCCGACACCCTGAACGCCGG CTACGGCCCCGACGTCATGACCGGCGGCGCCGGAGCAGACCGCTTCGTGTTCGACAACCTGCCCTGGAACGCCTCCAAGG TGACCGACTTCGAGGCCGGCGTGGACAAGCTGGACGTGAGCGGCCTGCTCGACGCGGCCGGCTACACAGGCTCGAACCCC GTCGCCGACGGCTACGTGAAGCTGATCGACAACGGCCAGGGCGACACCTGGGTCTACTTCGACACCGACGGCGCCGCCGC GGGCGACCAGTGGGGGACCTTCGTGACCACGCTGGAGAAGGTCTCGGCCGCCGAGGTGAAGGCCACGGACTGGATCATCT AG
Upstream 100 bases:
>100_bases CGTCTTCCCTTCCACTTTCCCGGTGCTGCGACGCGGACGGGCTTCGCAGACGACGGCGGCGTCGGGGCCGCCACAACACT TCGGACGGGAAGACCTACTG
Downstream 100 bases:
>100_bases GACGAGATCACGCCGGCGTCCCTCCCGTCCGAGGGAGGCCGGCGCTGAGCGGCGGGACCGGCCGGCCGGTCCTGACGCGA AGGGCCCTCTCCGACGGGAG
Product: endo-1,3-1,4-beta-glycanase, C-terminal secretion signal protein
Products: NA
Alternate protein names: Succinoglycan biosynthesis protein exsH [H]
Number of amino acids: Translated: 773; Mature: 772
Protein sequence:
>773_residues MSLFKYDGSAAAQTLAPAADFFGSNAAETITGTAGRDSLWLGQGDKGAGGAGDDTYYLQGHNTTIVEAAGGGVDRIVAWS SVKLADHPHIENLTVGNDGIYGAGNALDNIIEGQGGSQQIYGGFGQDILIGGAGADVFVVVKGEGNDVIQDFNVGEDKLR LKAGLSSFEQVKARMSQDGADVKLDLGGGDGLVFRGVTVGQFTAANFQLELDASTLGAKTFGDEFSGPLSLWDAQSNPTG LWRPDFGYQGEQGTGSYTLISNDEKQIYTSPYFRGHDGDFAESPFVNNADGTLSIWAKPSTNGEIFGYGYTSGMITTKET FSQTYGYFEMRADIPSAAGAWPAFWLIPADGSWPPELDVMETLTSDPNGLWTTQHSSLGGHSADGQLSYVPDTADGFHTY GAMWTPTEIVWYLDNVEVFRSATPADMNKPMFMIANLALGGWGGAIDGAALPAEFKIDYIRAYALGDGTGSQPPVEPPAS TPPTSTPPTGEIPVPPASGDGVTLTSQAFGDVMTGGAGADTLTAGNGGELMTGGAGGDVFVFKTFPWSPTEIQDFQVGVD KLDLSALMDGYSGADPVADGRLWLFDDGAGGTKVCVDPDGFGGEWPLYVAHLMGVPAEGLTADALLGSGEAPAAEAPAPA APGVELVSDRWGAELTGGDGADTLNAGYGPDVMTGGAGADRFVFDNLPWNASKVTDFEAGVDKLDVSGLLDAAGYTGSNP VADGYVKLIDNGQGDTWVYFDTDGAAAGDQWGTFVTTLEKVSAAEVKATDWII
Sequences:
>Translated_773_residues MSLFKYDGSAAAQTLAPAADFFGSNAAETITGTAGRDSLWLGQGDKGAGGAGDDTYYLQGHNTTIVEAAGGGVDRIVAWS SVKLADHPHIENLTVGNDGIYGAGNALDNIIEGQGGSQQIYGGFGQDILIGGAGADVFVVVKGEGNDVIQDFNVGEDKLR LKAGLSSFEQVKARMSQDGADVKLDLGGGDGLVFRGVTVGQFTAANFQLELDASTLGAKTFGDEFSGPLSLWDAQSNPTG LWRPDFGYQGEQGTGSYTLISNDEKQIYTSPYFRGHDGDFAESPFVNNADGTLSIWAKPSTNGEIFGYGYTSGMITTKET FSQTYGYFEMRADIPSAAGAWPAFWLIPADGSWPPELDVMETLTSDPNGLWTTQHSSLGGHSADGQLSYVPDTADGFHTY GAMWTPTEIVWYLDNVEVFRSATPADMNKPMFMIANLALGGWGGAIDGAALPAEFKIDYIRAYALGDGTGSQPPVEPPAS TPPTSTPPTGEIPVPPASGDGVTLTSQAFGDVMTGGAGADTLTAGNGGELMTGGAGGDVFVFKTFPWSPTEIQDFQVGVD KLDLSALMDGYSGADPVADGRLWLFDDGAGGTKVCVDPDGFGGEWPLYVAHLMGVPAEGLTADALLGSGEAPAAEAPAPA APGVELVSDRWGAELTGGDGADTLNAGYGPDVMTGGAGADRFVFDNLPWNASKVTDFEAGVDKLDVSGLLDAAGYTGSNP VADGYVKLIDNGQGDTWVYFDTDGAAAGDQWGTFVTTLEKVSAAEVKATDWII >Mature_772_residues SLFKYDGSAAAQTLAPAADFFGSNAAETITGTAGRDSLWLGQGDKGAGGAGDDTYYLQGHNTTIVEAAGGGVDRIVAWSS VKLADHPHIENLTVGNDGIYGAGNALDNIIEGQGGSQQIYGGFGQDILIGGAGADVFVVVKGEGNDVIQDFNVGEDKLRL KAGLSSFEQVKARMSQDGADVKLDLGGGDGLVFRGVTVGQFTAANFQLELDASTLGAKTFGDEFSGPLSLWDAQSNPTGL WRPDFGYQGEQGTGSYTLISNDEKQIYTSPYFRGHDGDFAESPFVNNADGTLSIWAKPSTNGEIFGYGYTSGMITTKETF SQTYGYFEMRADIPSAAGAWPAFWLIPADGSWPPELDVMETLTSDPNGLWTTQHSSLGGHSADGQLSYVPDTADGFHTYG AMWTPTEIVWYLDNVEVFRSATPADMNKPMFMIANLALGGWGGAIDGAALPAEFKIDYIRAYALGDGTGSQPPVEPPAST PPTSTPPTGEIPVPPASGDGVTLTSQAFGDVMTGGAGADTLTAGNGGELMTGGAGGDVFVFKTFPWSPTEIQDFQVGVDK LDLSALMDGYSGADPVADGRLWLFDDGAGGTKVCVDPDGFGGEWPLYVAHLMGVPAEGLTADALLGSGEAPAAEAPAPAA PGVELVSDRWGAELTGGDGADTLNAGYGPDVMTGGAGADRFVFDNLPWNASKVTDFEAGVDKLDVSGLLDAAGYTGSNPV ADGYVKLIDNGQGDTWVYFDTDGAAAGDQWGTFVTTLEKVSAAEVKATDWII
Specific function: Cleaves high molecular weight succinoglycan to yield LMW succinoglycan. Dynamically regulate the molecular weight distribution of succinoglycan by cleaving nascent succinoglycan only during a limited period after its synthesis, perhaps before it undergoes
COG id: COG2273
COG function: function code G; Beta-glucanase/Beta-glucan synthetase
Gene ontology:
Cell location: Secreted. Note=Probably by a type-III secretion system [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 3 hemolysin-type calcium-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008985 - InterPro: IPR013320 - InterPro: IPR000757 - InterPro: IPR011049 [H]
Pfam domain/function: PF00722 Glyco_hydro_16 [H]
EC number: NA
Molecular weight: Translated: 80270; Mature: 80138
Theoretical pI: Translated: 3.82; Mature: 3.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFKYDGSAAAQTLAPAADFFGSNAAETITGTAGRDSLWLGQGDKGAGGAGDDTYYLQG CCEEEECCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCEEEEEC HNTTIVEAAGGGVDRIVAWSSVKLADHPHIENLTVGNDGIYGAGNALDNIIEGQGGSQQI CCEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCEECCHHHHHHHCCCCCCCEE YGGFGQDILIGGAGADVFVVVKGEGNDVIQDFNVGEDKLRLKAGLSSFEQVKARMSQDGA CCCCCCEEEEECCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHCCHHHHHHHHHCCCCC DVKLDLGGGDGLVFRGVTVGQFTAANFQLELDASTLGAKTFGDEFSGPLSLWDAQSNPTG EEEEEECCCCEEEEECEEECEEEEEEEEEEECHHHCCCCCCCCCCCCCEEEEECCCCCCC LWRPDFGYQGEQGTGSYTLISNDEKQIYTSPYFRGHDGDFAESPFVNNADGTLSIWAKPS CCCCCCCCCCCCCCCCEEEEECCCCEEEECCCEECCCCCCCCCCCCCCCCCEEEEEECCC TNGEIFGYGYTSGMITTKETFSQTYGYFEMRADIPSAAGAWPAFWLIPADGSWPPELDVM CCCCEEEEEECCCEEEEHHHHHHHCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHH ETLTSDPNGLWTTQHSSLGGHSADGQLSYVPDTADGFHTYGAMWTPTEIVWYLDNVEVFR HHHCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCHHHCCCEECCCEEEEEECCCHHHH SATPADMNKPMFMIANLALGGWGGAIDGAALPAEFKIDYIRAYALGDGTGSQPPVEPPAS CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCC TPPTSTPPTGEIPVPPASGDGVTLTSQAFGDVMTGGAGADTLTAGNGGELMTGGAGGDVF CCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCEEECCCCCCEEECCCCCCEE VFKTFPWSPTEIQDFQVGVDKLDLSALMDGYSGADPVADGRLWLFDDGAGGTKVCVDPDG EEEECCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEECCCC FGGEWPLYVAHLMGVPAEGLTADALLGSGEAPAAEAPAPAAPGVELVSDRWGAELTGGDG CCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCC ADTLNAGYGPDVMTGGAGADRFVFDNLPWNASKVTDFEAGVDKLDVSGLLDAAGYTGSNP CCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCCC VADGYVKLIDNGQGDTWVYFDTDGAAAGDQWGTFVTTLEKVSAAEVKATDWII CCCCEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCC >Mature Secondary Structure SLFKYDGSAAAQTLAPAADFFGSNAAETITGTAGRDSLWLGQGDKGAGGAGDDTYYLQG CEEEECCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCEEEEEC HNTTIVEAAGGGVDRIVAWSSVKLADHPHIENLTVGNDGIYGAGNALDNIIEGQGGSQQI CCEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCEECCHHHHHHHCCCCCCCEE YGGFGQDILIGGAGADVFVVVKGEGNDVIQDFNVGEDKLRLKAGLSSFEQVKARMSQDGA CCCCCCEEEEECCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHCCHHHHHHHHHCCCCC DVKLDLGGGDGLVFRGVTVGQFTAANFQLELDASTLGAKTFGDEFSGPLSLWDAQSNPTG EEEEEECCCCEEEEECEEECEEEEEEEEEEECHHHCCCCCCCCCCCCCEEEEECCCCCCC LWRPDFGYQGEQGTGSYTLISNDEKQIYTSPYFRGHDGDFAESPFVNNADGTLSIWAKPS CCCCCCCCCCCCCCCCEEEEECCCCEEEECCCEECCCCCCCCCCCCCCCCCEEEEEECCC TNGEIFGYGYTSGMITTKETFSQTYGYFEMRADIPSAAGAWPAFWLIPADGSWPPELDVM CCCCEEEEEECCCEEEEHHHHHHHCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHH ETLTSDPNGLWTTQHSSLGGHSADGQLSYVPDTADGFHTYGAMWTPTEIVWYLDNVEVFR HHHCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCHHHCCCEECCCEEEEEECCCHHHH SATPADMNKPMFMIANLALGGWGGAIDGAALPAEFKIDYIRAYALGDGTGSQPPVEPPAS CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCC TPPTSTPPTGEIPVPPASGDGVTLTSQAFGDVMTGGAGADTLTAGNGGELMTGGAGGDVF CCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCEEECCCCCCEEECCCCCCEE VFKTFPWSPTEIQDFQVGVDKLDLSALMDGYSGADPVADGRLWLFDDGAGGTKVCVDPDG EEEECCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEECCCC FGGEWPLYVAHLMGVPAEGLTADALLGSGEAPAAEAPAPAAPGVELVSDRWGAELTGGDG CCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCC ADTLNAGYGPDVMTGGAGADRFVFDNLPWNASKVTDFEAGVDKLDVSGLLDAAGYTGSNP CCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCCC VADGYVKLIDNGQGDTWVYFDTDGAAAGDQWGTFVTTLEKVSAAEVKATDWII CCCCEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11902715; 11481431; 9560202 [H]