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The map label for this gene is potC [H]

Identifier: 197104667

GI number: 197104667

Start: 1385645

End: 1386433

Strand: Reverse

Name: potC [H]

Synonym: PHZ_c1201

Alternate gene names: 197104667

Gene position: 1386433-1385645 (Counterclockwise)

Preceding gene: 197104668

Following gene: 197104657

Centisome position: 34.69

GC content: 72.37

Gene sequence:

>789_bases
ATGAGGCGCGGACCCTCGGCCTTCGGCGTCGCGGCCATCGGGCTCGGCCTGCTGTTCCTCTACGCGCCCATCGCCATCCT
GGTGCTCTACTCCTTCAACGACGGGCGGCTGGTCACCGTCTGGAGCGGCTTTTCCCTGCGCTGGTACCGGGCCCTGTTCC
ACGACCGGCAGATGCTGGAGGCGATCTGGACGACGCTGCGGGTCGGCGCCCTCTCCGCAACGATGGCGACCGGGCTCGGC
GCCCTCGCGGCGGTGGCCCTCGCCCGCGCCGGGCGGTTCCGCGGCCGCACGGGGCTGGCGGGCATGATCTACGGCGCCCT
CGTCATGCCCGAGGTGATCCTGGGCCTGTCGCTCCTGCTGCTGTTCGTGGCCGCCGGCGTCCCCCGCGGCTTCTGGACGG
TGACGCTCAGCCACGCGACCCTGACGCTTTGCTACGCCACGGTCGTGGTGCAGGCCCGGCTGGCCAGCTTCGATCCGCGG
CTGGAGGAGGCCGCCCGCGACCTTGGCCGCACGCCCTGGCAGGCGTTCCTCACCGTGACCCTGCCCAACATCGCCCCGGC
CGTGGCCGCCGCCTGGATGCTGGCCTTCACGCTGTCGCTGGACGACCTGGTGATCGCGAGCTTCACCTCGGGCCCCGGGG
CGACCACGCTGCCGATGCGGATCTACAGCCAGGTTCGGCTGGGCGTGAACCCCGAGATCAACGCCGTCTCGACCCTGCTG
ATCGGGGCGGTGGCCACGGGCGTGATCGGCGCCTGGCTGATCCAGCAGCGCCGCGCGCGAAGGGCCTAG

Upstream 100 bases:

>100_bases
ACCGCGACTGGCCGGCGGCCTCGGCGGTGGCGATTGCGCTGCTCGCCACCCTGCTCGTCCCCATCCTGCTGTTCGAGCGC
CAGCCCCGCCGGGTGCTGGG

Downstream 100 bases:

>100_bases
AGCGGCGCGACCCTGTCGAACCAGGGCCGGGCCCGCTCCAGCTGGCCCGCCAGGCTGAACAGCATCGCCTCCTCGCCCGT
GCGGCCGACGAACTGCAGGC

Product: spermidine/putrescine ABC transporter, permease protein

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRRGPSAFGVAAIGLGLLFLYAPIAILVLYSFNDGRLVTVWSGFSLRWYRALFHDRQMLEAIWTTLRVGALSATMATGLG
ALAAVALARAGRFRGRTGLAGMIYGALVMPEVILGLSLLLLFVAAGVPRGFWTVTLSHATLTLCYATVVVQARLASFDPR
LEEAARDLGRTPWQAFLTVTLPNIAPAVAAAWMLAFTLSLDDLVIASFTSGPGATTLPMRIYSQVRLGVNPEINAVSTLL
IGAVATGVIGAWLIQQRRARRA

Sequences:

>Translated_262_residues
MRRGPSAFGVAAIGLGLLFLYAPIAILVLYSFNDGRLVTVWSGFSLRWYRALFHDRQMLEAIWTTLRVGALSATMATGLG
ALAAVALARAGRFRGRTGLAGMIYGALVMPEVILGLSLLLLFVAAGVPRGFWTVTLSHATLTLCYATVVVQARLASFDPR
LEEAARDLGRTPWQAFLTVTLPNIAPAVAAAWMLAFTLSLDDLVIASFTSGPGATTLPMRIYSQVRLGVNPEINAVSTLL
IGAVATGVIGAWLIQQRRARRA
>Mature_262_residues
MRRGPSAFGVAAIGLGLLFLYAPIAILVLYSFNDGRLVTVWSGFSLRWYRALFHDRQMLEAIWTTLRVGALSATMATGLG
ALAAVALARAGRFRGRTGLAGMIYGALVMPEVILGLSLLLLFVAAGVPRGFWTVTLSHATLTLCYATVVVQARLASFDPR
LEEAARDLGRTPWQAFLTVTLPNIAPAVAAAWMLAFTLSLDDLVIASFTSGPGATTLPMRIYSQVRLGVNPEINAVSTLL
IGAVATGVIGAWLIQQRRARRA

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787081, Length=255, Percent_Identity=55.2941176470588, Blast_Score=232, Evalue=2e-62,
Organism=Escherichia coli, GI1787368, Length=230, Percent_Identity=41.7391304347826, Blast_Score=197, Evalue=5e-52,
Organism=Escherichia coli, GI1787714, Length=259, Percent_Identity=33.976833976834, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1788764, Length=230, Percent_Identity=28.2608695652174, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28045; Mature: 28045

Theoretical pI: Translated: 11.72; Mature: 11.72

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRGPSAFGVAAIGLGLLFLYAPIAILVLYSFNDGRLVTVWSGFSLRWYRALFHDRQMLE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCHHHHHHHHHHHHHHH
AIWTTLRVGALSATMATGLGALAAVALARAGRFRGRTGLAGMIYGALVMPEVILGLSLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LFVAAGVPRGFWTVTLSHATLTLCYATVVVQARLASFDPRLEEAARDLGRTPWQAFLTVT
HHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHEEEEE
LPNIAPAVAAAWMLAFTLSLDDLVIASFTSGPGATTLPMRIYSQVRLGVNPEINAVSTLL
CCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
IGAVATGVIGAWLIQQRRARRA
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRGPSAFGVAAIGLGLLFLYAPIAILVLYSFNDGRLVTVWSGFSLRWYRALFHDRQMLE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCHHHHHHHHHHHHHHH
AIWTTLRVGALSATMATGLGALAAVALARAGRFRGRTGLAGMIYGALVMPEVILGLSLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LFVAAGVPRGFWTVTLSHATLTLCYATVVVQARLASFDPRLEEAARDLGRTPWQAFLTVT
HHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHEEEEE
LPNIAPAVAAAWMLAFTLSLDDLVIASFTSGPGATTLPMRIYSQVRLGVNPEINAVSTLL
CCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
IGAVATGVIGAWLIQQRRARRA
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]